Amy Bernard - Publications

Affiliations: 
Allen Institute for Brain Science, Seattle, WA, United States 
Area:
cortex, in situ hybridization, cell identity, neural development

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Campagnola L, Seeman SC, Chartrand T, Kim L, Hoggarth A, Gamlin C, Ito S, Trinh J, Davoudian P, Radaelli C, Kim MH, Hage T, Braun T, Alfiler L, Andrade J, ... ... Bernard A, et al. Local connectivity and synaptic dynamics in mouse and human neocortex. Science (New York, N.Y.). 375: eabj5861. PMID 35271334 DOI: 10.1126/science.abj5861  0.53
2022 Berg J, Sorensen SA, Ting JT, Miller JA, Chartrand T, Buchin A, Bakken TE, Budzillo A, Dee N, Ding SL, Gouwens NW, Hodge RD, Kalmbach B, Lee C, Lee BR, ... ... Bernard A, et al. Author Correction: Human neocortical expansion involves glutamatergic neuron diversification. Nature. PMID 34992294 DOI: 10.1038/s41586-021-04322-4  0.531
2021 Berg J, Sorensen SA, Ting JT, Miller JA, Chartrand T, Buchin A, Bakken TE, Budzillo A, Dee N, Ding SL, Gouwens NW, Hodge RD, Kalmbach B, Lee C, Lee BR, ... ... Bernard A, et al. Human neocortical expansion involves glutamatergic neuron diversification. Nature. 598: 151-158. PMID 34616067 DOI: 10.1038/s41586-021-03813-8  0.586
2021 Ding SL, Royall JJ, Lesnar P, Facer BAC, Smith KA, Wei Y, Brouner K, Dalley RA, Dee N, Dolbeare TA, Ebbert A, Glass IA, Keller NH, Lee F, Lemon TA, ... ... Bernard A, et al. Cellular resolution anatomical and molecular atlases for prenatal human brains. The Journal of Comparative Neurology. PMID 34525221 DOI: 10.1002/cne.25243  0.324
2021 Siegle JH, Jia X, Durand S, Gale S, Bennett C, Graddis N, Heller G, Ramirez TK, Choi H, Luviano JA, Groblewski PA, Ahmed R, Arkhipov A, Bernard A, Billeh YN, et al. Survey of spiking in the mouse visual system reveals functional hierarchy. Nature. PMID 33473216 DOI: 10.1038/s41586-020-03171-x  0.466
2020 Wang Q, Ding SL, Li Y, Royall J, Feng D, Lesnar P, Graddis N, Naeemi M, Facer B, Ho A, Dolbeare T, Blanchard B, Dee N, Wakeman W, Hirokawa KE, ... ... Bernard A, et al. The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell. PMID 32386544 DOI: 10.1016/J.Cell.2020.04.007  0.545
2020 Adams A, Albin S, Amunts K, Asakawa T, Bernard A, Bjaalie JG, Chakli K, Deshler JO, Koninck YD, Ebell CJ, Egan G, Hale ME, Häusser M, Jeong SJ, Illes J, et al. Erratum: International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts (Neuron (2020) 105(2) (212–216), (S0896627320300027), (10.1016/j.neuron.2020.01.002)) Neuron. 105. PMID 32135092 DOI: 10.1016/J.Neuron.2020.02.022  0.355
2020 Hodge RD, Miller JA, Novotny M, Kalmbach BE, Ting JT, Bakken TE, Aevermann BD, Barkan ER, Berkowitz-Cerasano ML, Cobbs C, Diez-Fuertes F, Ding SL, McCorrison J, Schork NJ, Shehata SI, ... ... Bernard A, et al. Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons. Nature Communications. 11: 1172. PMID 32127543 DOI: 10.1038/s41467-020-14952-3  0.36
2020 Adams A, Albin S, Amunts K, Asakawa T, Bernard A, Bjaalie JG, Chakli K, Deshler JO, Koninck YD, Ebell CJ, Egan G, Hale ME, Häusser M, Jeong S, Illes J, et al. International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts Neuron. 105: 212-216. PMID 31972144 DOI: 10.1016/J.Neuron.2020.01.002  0.33
2019 de Vries SEJ, Lecoq JA, Buice MA, Groblewski PA, Ocker GK, Oliver M, Feng D, Cain N, Ledochowitsch P, Millman D, Roll K, Garrett M, Keenan T, Kuan L, Mihalas S, ... ... Bernard A, et al. A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex. Nature Neuroscience. PMID 31844315 DOI: 10.1038/S41593-019-0550-9  0.335
2019 Harris JA, Mihalas S, Hirokawa KE, Whitesell JD, Choi H, Bernard A, Bohn P, Caldejon S, Casal L, Cho A, Feiner A, Feng D, Gaudreault N, Gerfen CR, Graddis N, et al. Hierarchical organization of cortical and thalamic connectivity. Nature. PMID 31666704 DOI: 10.1038/S41586-019-1716-Z  0.694
2019 Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, ... ... Bernard A, et al. Conserved cell types with divergent features in human versus mouse cortex. Nature. PMID 31435019 DOI: 10.1038/S41586-019-1506-7  0.396
2019 Gouwens NW, Sorensen SA, Berg J, Lee C, Jarsky T, Ting J, Sunkin SM, Feng D, Anastassiou CA, Barkan E, Bickley K, Blesie N, Braun T, Brouner K, Budzillo A, ... ... Bernard A, et al. Classification of electrophysiological and morphological neuron types in the mouse visual cortex. Nature Neuroscience. PMID 31209381 DOI: 10.1038/S41593-019-0417-0  0.675
2018 Bakken TE, Hodge RD, Miller JA, Yao Z, Nguyen TN, Aevermann B, Barkan E, Bertagnolli D, Casper T, Dee N, Garren E, Goldy J, Graybuck LT, Kroll M, Lasken RS, ... ... Bernard A, et al. Single-nucleus and single-cell transcriptomes compared in matched cortical cell types. Plos One. 13: e0209648. PMID 30586455 DOI: 10.1371/Journal.Pone.0209648  0.365
2018 Tasic B, Yao Z, Graybuck LT, Smith KA, Nguyen TN, Bertagnolli D, Goldy J, Garren E, Economo MN, Viswanathan S, Penn O, Bakken T, Menon V, Miller J, Fong O, ... ... Bernard A, et al. Shared and distinct transcriptomic cell types across neocortical areas. Nature. 563: 72-78. PMID 30382198 DOI: 10.1038/S41586-018-0654-5  0.552
2017 Martersteck EM, Hirokawa KE, Evarts M, Bernard A, Duan X, Li Y, Ng L, Oh SW, Ouellette B, Royall JJ, Stoecklin M, Wang Q, Zeng H, Sanes JR, Harris JA. Diverse Central Projection Patterns of Retinal Ganglion Cells. Cell Reports. 18: 2058-2072. PMID 28228269 DOI: 10.1016/J.Celrep.2017.01.075  0.545
2016 Ding SL, Royall JJ, Sunkin SM, Ng L, Facer BA, Lesnar P, Guillozet-Bongaarts A, McMurray B, Szafer A, Dolbeare TA, Stevens A, Tirrell L, Benner T, Caldejon S, Dalley RA, ... ... Bernard A, et al. Comprehensive cellular-resolution atlas of the adult human brain. The Journal of Comparative Neurology. PMID 27418273 DOI: 10.1002/Cne.24080  0.377
2016 Bakken TE, Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Dalley RA, Royall JJ, Lemon T, Shapouri S, Aiona K, Arnold J, Bennett JL, Bertagnolli D, ... ... Bernard A, et al. A comprehensive transcriptional map of primate brain development. Nature. PMID 27409810 DOI: 10.1038/Nature18637  0.436
2016 Billeh YN, Rodriguez AV, Bellesi M, Bernard A, de Vivo L, Funk CM, Harris J, Honjoh S, Mihalas S, Ng L, Koch C, Cirelli C, Tononi G. Effects of Chronic Sleep Restriction during Early Adolescence on the Adult Pattern of Connectivity of Mouse Secondary Motor Cortex. Eneuro. 3. PMID 27351022 DOI: 10.1523/ENEURO.0053-16.2016  0.448
2016 Wang Q, Ng L, Harris JA, Feng D, Li Y, Royall JJ, Wook Oh S, Bernard A, Sunkin SM, Koch C, Zeng H. Organization of the connections between claustrum and cortex in the mouse. The Journal of Comparative Neurology. PMID 27223051 DOI: 10.1002/Cne.24047  0.517
2016 Tasic B, Menon V, Nguyen TN, Kim TK, Jarsky T, Yao Z, Levi B, Gray LT, Sorensen SA, Dolbeare T, Bertagnolli D, Goldy J, Shapovalova N, Parry S, Lee C, ... ... Bernard A, et al. Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. Nature Neuroscience. PMID 26727548 DOI: 10.1038/Nn.4216  0.612
2015 Hawrylycz M, Miller JA, Menon V, Feng D, Dolbeare T, Guillozet-Bongaarts AL, Jegga AG, Aronow BJ, Lee CK, Bernard A, Glasser MF, Dierker DL, Menche J, Szafer A, Collman F, et al. Canonical genetic signatures of the adult human brain. Nature Neuroscience. PMID 26571460 DOI: 10.1038/Nn.4171  0.413
2015 Bakken TE, Miller JA, Luo R, Bernard A, Bennett JL, Lee CK, Bertagnolli D, Parikshak NN, Smith KA, Sunkin SM, Amaral DG, Geschwind DH, Lein ES. Spatiotemporal dynamics of the postnatal developing primate brain transcriptome. Human Molecular Genetics. 24: 4327-39. PMID 25954031 DOI: 10.1093/Hmg/Ddv166  0.427
2015 Kuan L, Li Y, Lau C, Feng D, Bernard A, Sunkin SM, Zeng H, Dang C, Hawrylycz M, Ng L. Neuroinformatics of the Allen Mouse Brain Connectivity Atlas. Methods (San Diego, Calif.). 73: 4-17. PMID 25536338 DOI: 10.1016/J.Ymeth.2014.12.013  0.4
2015 Rossier J, Bernard A, Cabungcal JH, Perrenoud Q, Savoye A, Gallopin T, Hawrylycz M, Cuénod M, Do K, Urban A, Lein ES. Cortical fast-spiking parvalbumin interneurons enwrapped in the perineuronal net express the metallopeptidases Adamts8, Adamts15 and Neprilysin. Molecular Psychiatry. 20: 154-61. PMID 25510509 DOI: 10.1038/Mp.2014.162  0.343
2015 Sorensen SA, Bernard A, Menon V, Royall JJ, Glattfelder KJ, Desta T, Hirokawa K, Mortrud M, Miller JA, Zeng H, Hohmann JG, Jones AR, Lein ES. Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity. Cerebral Cortex (New York, N.Y. : 1991). 25: 433-49. PMID 24014670 DOI: 10.1093/Cercor/Bht243  0.617
2014 Pfenning AR, Hara E, Whitney O, Rivas MV, Wang R, Roulhac PL, Howard JT, Wirthlin M, Lovell PV, Ganapathy G, Mouncastle J, Moseley MA, Thompson JW, Soderblom EJ, Iriki A, ... ... Bernard A, et al. Convergent transcriptional specializations in the brains of humans and song-learning birds. Science (New York, N.Y.). 346: 1256846. PMID 25504733 DOI: 10.1126/Science.1256846  0.333
2014 Harris JA, Hirokawa KE, Sorensen SA, Gu H, Mills M, Ng LL, Bohn P, Mortrud M, Ouellette B, Kidney J, Smith KA, Dang C, Sunkin S, Bernard A, Oh SW, et al. Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation. Frontiers in Neural Circuits. 8: 76. PMID 25071457 DOI: 10.3389/Fncir.2014.00076  0.701
2014 Thompson CL, Ng L, Menon V, Martinez S, Lee CK, Glattfelder K, Sunkin SM, Henry A, Lau C, Dang C, Garcia-Lopez R, Martinez-Ferre A, Pombero A, Rubenstein JL, Wakeman WB, ... ... Bernard A, et al. A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 83: 309-23. PMID 24952961 DOI: 10.1016/J.Neuron.2014.05.033  0.393
2014 Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Ebbert A, Riley ZL, Royall JJ, Aiona K, Arnold JM, Bennet C, Bertagnolli D, Brouner K, Butler S, ... ... Bernard A, et al. Transcriptional landscape of the prenatal human brain. Nature. 508: 199-206. PMID 24695229 DOI: 10.1038/Nature13185  0.406
2014 Oh SW, Harris JA, Ng L, Winslow B, Cain N, Mihalas S, Wang Q, Lau C, Kuan L, Henry AM, Mortrud MT, Ouellette B, Nguyen TN, Sorensen SA, Slaughterbeck CR, ... ... Bernard A, et al. A mesoscale connectome of the mouse brain. Nature. 508: 207-14. PMID 24695228 DOI: 10.1038/Nature13186  0.743
2014 Morrison T, Nagaraju M, Winslow B, Bernard A, Otis BP. A 0.5 cm(3) four-channel 1.1 mW wireless biosignal interface with 20 m range. Ieee Transactions On Biomedical Circuits and Systems. 8: 138-47. PMID 24681927 DOI: 10.1109/Tbcas.2013.2260337  0.676
2014 Wang Q, Henry AM, Harris JA, Oh SW, Joines KM, Nyhus J, Hirokawa KE, Dee N, Mortrud M, Parry S, Ouellette B, Caldejon S, Bernard A, Jones AR, Zeng H, et al. Systematic comparison of adeno-associated virus and biotinylated dextran amine reveals equivalent sensitivity between tracers and novel projection targets in the mouse brain. The Journal of Comparative Neurology. 522: 1989-2012. PMID 24639291 DOI: 10.1002/Cne.23567  0.566
2014 Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Yang JL, Ferrante TC, Terry R, Jeanty SS, Li C, Amamoto R, Peters DT, Turczyk BM, Marblestone AH, Inverso SA, Bernard A, et al. Highly multiplexed subcellular RNA sequencing in situ. Science (New York, N.Y.). 343: 1360-3. PMID 24578530 DOI: 10.1126/Science.1250212  0.302
2014 Anthony TE, Dee N, Bernard A, Lerchner W, Heintz N, Anderson DJ. Control of stress-induced persistent anxiety by an extra-amygdala septohypothalamic circuit. Cell. 156: 522-36. PMID 24485458 DOI: 10.1016/J.Cell.2013.12.040  0.324
2013 Miller JA, Nathanson J, Franjic D, Shim S, Dalley RA, Shapouri S, Smith KA, Sunkin SM, Bernard A, Bennett JL, Lee CK, Hawrylycz MJ, Jones AR, Amaral DG, Å estan N, et al. Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development (Cambridge, England). 140: 4633-44. PMID 24154525 DOI: 10.1242/Dev.097212  0.381
2012 Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, et al. An anatomically comprehensive atlas of the adult human brain transcriptome. Nature. 489: 391-9. PMID 22996553 DOI: 10.1038/Nature11405  0.448
2012 Zeng H, Shen EH, Hohmann JG, Oh SW, Bernard A, Royall JJ, Glattfelder KJ, Sunkin SM, Morris JA, Guillozet-Bongaarts AL, Smith KA, Ebbert AJ, Swanson B, Kuan L, Page DT, et al. Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures. Cell. 149: 483-96. PMID 22500809 DOI: 10.1016/J.Cell.2012.02.052  0.405
2012 Bernard A, Lubbers LS, Tanis KQ, Luo R, Podtelezhnikov AA, Finney EM, McWhorter MM, Serikawa K, Lemon T, Morgan R, Copeland C, Smith K, Cullen V, Davis-Turak J, Lee CK, et al. Transcriptional architecture of the primate neocortex. Neuron. 73: 1083-99. PMID 22445337 DOI: 10.1016/J.Neuron.2012.03.002  0.38
2011 Boyle MP, Bernard A, Thompson CL, Ng L, Boe A, Mortrud M, Hawrylycz MJ, Jones AR, Hevner RF, Lein ES. Cell-type-specific consequences of Reelin deficiency in the mouse neocortex, hippocampus, and amygdala. The Journal of Comparative Neurology. 519: 2061-89. PMID 21491433 DOI: 10.1002/Cne.22655  0.404
2011 Zariwala HA, Madisen L, Ahrens KF, Bernard A, Lein ES, Jones AR, Zeng H. Visual tuning properties of genetically identified layer 2/3 neuronal types in the primary visual cortex of cre-transgenic mice. Frontiers in Systems Neuroscience. 4: 162. PMID 21283555 DOI: 10.3389/Fnsys.2010.00162  0.364
2010 Ng L, Lau C, Sunkin SM, Bernard A, Chakravarty MM, Lein ES, Jones AR, Hawrylycz M. Surface-based mapping of gene expression and probabilistic expression maps in the mouse cortex. Methods (San Diego, Calif.). 50: 55-62. PMID 19818854 DOI: 10.1016/j.ymeth.2009.10.001  0.399
2010 Hawrylycz M, Bernard A, Lau C, Sunkin SM, Chakravarty MM, Lein ES, Jones AR, Ng L. Areal and laminar differentiation in the mouse neocortex using large scale gene expression data. Methods (San Diego, Calif.). 50: 113-21. PMID 19800006 DOI: 10.1016/j.ymeth.2009.09.005  0.413
2009 Bernard A, Sorensen SA, Lein ES. Shifting the paradigm: new approaches for characterizing and classifying neurons. Current Opinion in Neurobiology. 19: 530-6. PMID 19896835 DOI: 10.1016/j.conb.2009.09.010  0.595
2009 Ng L, Bernard A, Lau C, Overly CC, Dong HW, Kuan C, Pathak S, Sunkin SM, Dang C, Bohland JW, Bokil H, Mitra PP, Puelles L, Hohmann J, Anderson DJ, et al. An anatomic gene expression atlas of the adult mouse brain. Nature Neuroscience. 12: 356-62. PMID 19219037 DOI: 10.1038/Nn.2281  0.416
2009 Daudet N, Gibson R, Shang J, Bernard A, Lewis J, Stone J. Notch regulation of progenitor cell behavior in quiescent and regenerating auditory epithelium of mature birds. Developmental Biology. 326: 86-100. PMID 19013445 DOI: 10.1016/J.Ydbio.2008.10.033  0.589
2008 Thompson CL, Pathak SD, Jeromin A, Ng LL, MacPherson CR, Mortrud MT, Cusick A, Riley ZL, Sunkin SM, Bernard A, Puchalski RB, Gage FH, Jones AR, Bajic VB, Hawrylycz MJ, et al. Genomic anatomy of the hippocampus. Neuron. 60: 1010-21. PMID 19109908 DOI: 10.1016/J.Neuron.2008.12.008  0.366
2007 Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, Bernard A, Boe AF, Boguski MS, Brockway KS, Byrnes EJ, Chen L, Chen L, Chen TM, Chin MC, Chong J, et al. Genome-wide atlas of gene expression in the adult mouse brain. Nature. 445: 168-76. PMID 17151600 DOI: 10.1038/Nature05453  0.403
2005 Burger RM, Pfeiffer JD, Westrum LE, Bernard A, Rubel EW. Expression of GABA(B) receptor in the avian auditory brainstem: ontogeny, afferent deprivation, and ultrastructure. The Journal of Comparative Neurology. 489: 11-22. PMID 15977167 DOI: 10.1002/Cne.20607  0.635
2003 Braun MM, Etheridge A, Bernard A, Robertson CP, Roelink H. Wnt signaling is required at distinct stages of development for the induction of the posterior forebrain. Development (Cambridge, England). 130: 5579-87. PMID 14522868 DOI: 10.1242/Dev.00685  0.696
2001 Nickas ME, Bernard A, Kazlauskas A. The requirement of tyrosines 579 and 581 for maximal ligand-dependent activation of the betaPDGFR is influenced by noncytoplasmic regions of the receptor. Experimental Cell Research. 265: 80-9. PMID 11281646 DOI: 10.1006/Excr.2001.5169  0.506
1999 Bernard A, Kazlauskas A. Phosphospecific antibodies reveal temporal regulation of platelet-derived growth factor beta receptor signaling. Experimental Cell Research. 253: 704-12. PMID 10585294 DOI: 10.1006/Excr.1999.4715  0.506
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