Juan Nunez-Iglesias, PhD - Publications

Affiliations: 
Victorian Life Sciences Computation Initiative 
Area:
connectomics, image segmentation, neuron reconstruction
Website:
http://ilovesymposia.com

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Takemura SY, Xu CS, Lu Z, Rivlin PK, Parag T, Olbris DJ, Plaza S, Zhao T, Katz WT, Umayam L, Weaver C, Hess HF, Horne JA, Nunez-Iglesias J, Aniceto R, et al. Synaptic circuits and their variations within different columns in the visual system of Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 112: 13711-6. PMID 26483464 DOI: 10.1073/pnas.1509820112  0.36
2014 van der Walt S, Schönberger JL, Nunez-Iglesias J, Boulogne F, Warner JD, Yager N, Gouillart E, Yu T. scikit-image: image processing in Python. Peerj. 2: e453. PMID 25024921 DOI: 10.7717/peerj.453  0.36
2014 Nunez-Iglesias J, Kennedy R, Plaza SM, Chakraborty A, Katz WT. Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages. Frontiers in Neuroinformatics. 8: 34. PMID 24772079 DOI: 10.3389/fninf.2014.00034  0.36
2013 Nunez-Iglesias J, Kennedy R, Parag T, Shi J, Chklovskii DB. Machine learning of hierarchical clustering to segment 2D and 3D images. Plos One. 8: e71715. PMID 23977123 DOI: 10.1371/journal.pone.0071715  0.36
2013 Hu T, Nunez-Iglesias J, Vitaladevuni S, Scheffer L, Xu S, Bolorizadeh M, Hess H, Fetter R, Chklovskii D. Electron Microscopy Reconstruction of Brain Structure Using Sparse Representations over Learned Dictionaries. Ieee Transactions On Medical Imaging. PMID 23925366 DOI: 10.1109/TMI.2013.2276018  0.36
2012 Grover D, Nunez-Iglesias J. Betamax: towards optimal sampling strategies for high-throughput screens. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 776-84. PMID 22697247 DOI: 10.1089/cmb.2012.0036  0.36
2012 Li W, Hu H, Huang Y, Li H, Mehan MR, Nunez-Iglesias J, Xu M, Yan X, Zhou XJ. Frequent Pattern Discovery in Multiple Biological Networks: Patterns and Algorithms Statistics in Biosciences. 4: 157-176. DOI: 10.1007/s12561-011-9047-0  0.36
2012 Li W, Hu H, Huang Y, Li H, Mehan MR, Nunez-Iglesias J, Xu M, Yan X, Zhou XJ. Pattern mining across many massive biological networks Functional Coherence of Molecular Networks in Bioinformatics. 2147483647: 137-170. DOI: 10.1007/978-1-4614-0320-3_6  0.36
2011 Glasner D, Hu T, Nunez-Iglesias J, Scheffer L, Xu S, Hess H, Fetter R, Chklovskii D, Basri R. High resolution segmentation of neuronal tissues from low depth-resolution em imagery Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6819: 261-272. DOI: 10.1007/978-3-642-23094-3_19  0.36
2010 Nunez-Iglesias J, Liu CC, Morgan TE, Finch CE, Zhou XJ. Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation. Plos One. 5: e8898. PMID 20126538 DOI: 10.1371/journal.pone.0008898  0.36
2010 Mehan MR, Nunez-Iglesias J, Dai C, Waterman MS, Zhou XJ. An integrative modular approach to systematically predict gene-phenotype associations. Bmc Bioinformatics. 11: S62. PMID 20122238 DOI: 10.1186/1471-2105-11-S1-S62  0.36
2009 Wang W, Nunez-Iglesias J, Luan Y, Sun F. Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach. Bmc Bioinformatics. 10: 277. PMID 19728875 DOI: 10.1186/1471-2105-10-277  0.36
2009 Mehan MR, Nunez-Iglesias J, Kalakrishnan M, Waterman MS, Zhou XJ. An integrative network approach to map the transcriptome to the phenome. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1023-34. PMID 19630539 DOI: 10.1089/cmb.2009.0037  0.36
2008 Xu M, Kao MC, Nunez-Iglesias J, Nevins JR, West M, Zhou XJ. An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. Bmc Genomics. 9: S12. PMID 18366601 DOI: 10.1186/1471-2164-9-S1-S12  0.36
2007 Pan F, Chiu CH, Pulapura S, Mehan MR, Nunez-Iglesias J, Zhang K, Kamath K, Waterman MS, Finch CE, Zhou XJ. Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Research. 35: D756-9. PMID 17090592 DOI: 10.1093/nar/gkl798  0.36
2006 Pan F, Kamath K, Zhang K, Pulapura S, Achar A, Nunez-Iglesias J, Huang Y, Yan X, Han J, Hu H, Xu M, Hu J, Zhou XJ. Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data. Bioinformatics (Oxford, England). 22: 1665-7. PMID 16672260 DOI: 10.1093/bioinformatics/btl163  0.36
2005 Zhou XJ, Kao MC, Huang H, Wong A, Nunez-Iglesias J, Primig M, Aparicio OM, Finch CE, Morgan TE, Wong WH. Functional annotation and network reconstruction through cross-platform integration of microarray data. Nature Biotechnology. 23: 238-43. PMID 15654329 DOI: 10.1038/nbt1058  0.36
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