Juan Nunez-Iglesias, PhD - Publications

Affiliations: 
Victorian Life Sciences Computation Initiative 
Area:
connectomics, image segmentation, neuron reconstruction
Website:
http://ilovesymposia.com

8/27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Gouillart E, Nunez-Iglesias J, van der Walt S. Analyzing microtomography data with Python and the scikit-image library. Advanced Structural and Chemical Imaging. 2: 18. PMID 29142808 DOI: 10.1186/S40679-016-0031-0  0.345
2015 Takemura SY, Xu CS, Lu Z, Rivlin PK, Parag T, Olbris DJ, Plaza S, Zhao T, Katz WT, Umayam L, Weaver C, Hess HF, Horne JA, Nunez-Iglesias J, Aniceto R, et al. Synaptic circuits and their variations within different columns in the visual system of Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 112: 13711-6. PMID 26483464 DOI: 10.1073/Pnas.1509820112  0.312
2014 van der Walt S, Schönberger JL, Nunez-Iglesias J, Boulogne F, Warner JD, Yager N, Gouillart E, Yu T. scikit-image: image processing in Python. Peerj. 2: e453. PMID 25024921 DOI: 10.7717/Peerj.453  0.312
2014 Nunez-Iglesias J, Kennedy R, Plaza SM, Chakraborty A, Katz WT. Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages. Frontiers in Neuroinformatics. 8: 34. PMID 24772079 DOI: 10.3389/Fninf.2014.00034  0.443
2013 Nunez-Iglesias J, Kennedy R, Parag T, Shi J, Chklovskii DB. Machine learning of hierarchical clustering to segment 2D and 3D images. Plos One. 8: e71715. PMID 23977123 DOI: 10.1371/Journal.Pone.0071715  0.375
2013 Hu T, Nunez-Iglesias J, Vitaladevuni S, Scheffer L, Xu S, Bolorizadeh M, Hess H, Fetter R, Chklovskii D. Electron Microscopy Reconstruction of Brain Structure Using Sparse Representations over Learned Dictionaries. Ieee Transactions On Medical Imaging. PMID 23925366 DOI: 10.1109/Tmi.2013.2276018  0.572
2011 Glasner D, Hu T, Nunez-Iglesias J, Scheffer L, Xu S, Hess H, Fetter R, Chklovskii D, Basri R. High resolution segmentation of neuronal tissues from low depth-resolution em imagery Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6819: 261-272. DOI: 10.1007/978-3-642-23094-3_19  0.579
2005 Zhou XJ, Kao MC, Huang H, Wong A, Nunez-Iglesias J, Primig M, Aparicio OM, Finch CE, Morgan TE, Wong WH. Functional annotation and network reconstruction through cross-platform integration of microarray data. Nature Biotechnology. 23: 238-43. PMID 15654329 DOI: 10.1038/Nbt1058  0.3
Low-probability matches (unlikely to be authored by this person)
2012 Li W, Hu H, Huang Y, Li H, Mehan MR, Nunez-Iglesias J, Xu M, Yan X, Zhou XJ. Frequent Pattern Discovery in Multiple Biological Networks: Patterns and Algorithms Statistics in Biosciences. 4: 157-176. DOI: 10.1007/S12561-011-9047-0  0.286
2009 Mehan MR, Nunez-Iglesias J, Kalakrishnan M, Waterman MS, Zhou XJ. An integrative network approach to map the transcriptome to the phenome. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1023-34. PMID 19630539 DOI: 10.1089/Cmb.2009.0037  0.277
2018 Nunez-Iglesias J, Blanch AJ, Looker O, Dixon MW, Tilley L. A new Python library to analyse skeleton images confirms malaria parasite remodelling of the red blood cell membrane skeleton. Peerj. 6: e4312. PMID 29472997 DOI: 10.7717/Peerj.4312  0.275
2008 Xu M, Kao MC, Nunez-Iglesias J, Nevins JR, West M, Zhou XJ. An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. Bmc Genomics. 9: S12. PMID 18366601 DOI: 10.1186/1471-2164-9-S1-S12  0.264
2019 Looker O, Blanch AJ, Liu B, Nunez-Iglesias J, McMillan PJ, Tilley L, Dixon MWA. The knob protein KAHRP assembles into a ring-shaped structure that underpins virulence complex assembly. Plos Pathogens. 15: e1007761. PMID 31071194 DOI: 10.1371/Journal.Ppat.1007761  0.26
2010 Mehan MR, Nunez-Iglesias J, Dai C, Waterman MS, Zhou XJ. An integrative modular approach to systematically predict gene-phenotype associations. Bmc Bioinformatics. 11: S62. PMID 20122238 DOI: 10.1186/1471-2105-11-S1-S62  0.25
2009 Wang W, Nunez-Iglesias J, Luan Y, Sun F. Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach. Bmc Bioinformatics. 10: 277. PMID 19728875 DOI: 10.1186/1471-2105-10-277  0.242
2006 Pan F, Kamath K, Zhang K, Pulapura S, Achar A, Nunez-Iglesias J, Huang Y, Yan X, Han J, Hu H, Xu M, Hu J, Zhou XJ. Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data. Bioinformatics (Oxford, England). 22: 1665-7. PMID 16672260 DOI: 10.1093/Bioinformatics/Btl163  0.241
2007 Pan F, Chiu CH, Pulapura S, Mehan MR, Nunez-Iglesias J, Zhang K, Kamath K, Waterman MS, Finch CE, Zhou XJ. Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Research. 35: D756-9. PMID 17090592 DOI: 10.1093/Nar/Gkl798  0.24
2010 Nunez-Iglesias J, Liu CC, Morgan TE, Finch CE, Zhou XJ. Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation. Plos One. 5: e8898. PMID 20126538 DOI: 10.1371/Journal.Pone.0008898  0.216
2012 Grover D, Nunez-Iglesias J. Betamax: towards optimal sampling strategies for high-throughput screens. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 776-84. PMID 22697247 DOI: 10.1089/Cmb.2012.0036  0.213
2017 Chan FL, Vinod B, Novy K, Schittenhelm RB, Huang C, Udugama M, Nunez-Iglesias J, Lin JI, Hii L, Chan J, Pickett HA, Daly RJ, Wong LH. Aurora Kinase B, a novel regulator of TERF1 binding and telomeric integrity. Nucleic Acids Research. PMID 29040668 DOI: 10.1093/Nar/Gkx904  0.205
2006 Noble B, Abada P, Nunez-Iglesias J, Cannon PM. Recruitment of the adaptor protein 2 complex by the human immunodeficiency virus type 2 envelope protein is necessary for high levels of virus release. Journal of Virology. 80: 2924-32. PMID 16501101 DOI: 10.1128/Jvi.80.6.2924-2932.2006  0.189
2022 Rawlinson S, Reichenbach A, Clarke RE, Nuñez-Iglesias J, Dempsey H, Lockie SH, Andrews ZB. In vivo photometry reveals insulin and 2-deoxyglucose maintain prolonged inhibition of VMH Vglut2 neurons in male mice. Endocrinology. PMID 35788848 DOI: 10.1210/endocr/bqac095  0.183
2013 Nunez-Iglesias J, Kennedy R. Towards a universal error measure in connectomics using the variation of information F1000research. 4. DOI: 10.7490/F1000Research.1094269.1  0.182
2022 Reichenbach A, Clarke RE, Stark R, Lockie SH, Mequinion M, Dempsey H, Rawlinson S, Reed F, Sepehrizadeh T, DeVeer M, Munder AC, Nunez-Iglesias J, Spanswick D, Mynatt R, Kravitz AV, et al. Metabolic sensing in AgRP neurons integrates homeostatic state with dopamine signalling in the striatum. Elife. 11. PMID 35018884 DOI: 10.7554/eLife.72668  0.165
2022 Blanch AJ, Nunez-Iglesias J, Namvar A, Menant S, Looker O, Rajagopal V, Tham WH, Tilley L, Dixon MWA. Multimodal imaging reveals membrane skeleton reorganisation during reticulocyte maturation and differences in dimple and rim regions of mature erythrocytes. Journal of Structural Biology: X. 6: 100056. PMID 34977554 DOI: 10.1016/j.yjsbx.2021.100056  0.128
2012 Li W, Hu H, Huang Y, Li H, Mehan MR, Nunez-Iglesias J, Xu M, Yan X, Zhou XJ. Pattern mining across many massive biological networks Functional Coherence of Molecular Networks in Bioinformatics. 2147483647: 137-170. DOI: 10.1007/978-1-4614-0320-3_6  0.086
2022 Clarke RE, Voigt K, Reichenbach A, Stark R, Bharania U, Dempsey H, Lockie SH, Mequinion M, Lemus M, Wei B, Reed F, Rawlinson S, Nunez-Iglesias J, Foldi CJ, Kravitz AV, et al. Identification of a Stress-Sensitive Anorexigenic Neurocircuit From Medial Prefrontal Cortex to Lateral Hypothalamus. Biological Psychiatry. PMID 36400605 DOI: 10.1016/j.biopsych.2022.08.022  0.055
Hide low-probability matches.