Jan G. Bjaalie - Publications

Institute of Basic Medical Sciences University of Oslo, Oslo, Oslo, Norway 

69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Abrams MB, Bjaalie JG, Das S, Egan GF, Ghosh SS, Goscinski WJ, Grethe JS, Kotaleski JH, Ho ETW, Kennedy DN, Lanyon LJ, Leergaard TB, Mayberg HS, Milanesi L, Mouček R, et al. A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics. PMID 33506383 DOI: 10.1007/s12021-020-09509-0  1
2021 Bjerke IE, Yates SC, Laja A, Witter MP, Puchades MA, Bjaalie JG, Leergaard TB. Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain. Iscience. 24: 101906. PMID 33385111 DOI: 10.1016/j.isci.2020.101906  1
2020 Groeneboom NE, Yates SC, Puchades MA, Bjaalie JG. Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images. Frontiers in Neuroinformatics. 14: 37. PMID 32973479 DOI: 10.3389/fninf.2020.00037  0.88
2020 Bjerke IE, Puchades MA, Bjaalie JG, Leergaard TB. Database of literature derived cellular measurements from the murine basal ganglia. Scientific Data. 7: 211. PMID 32632099 DOI: 10.1038/s41597-020-0550-3  1
2019 Yates SC, Groeneboom NE, Coello C, Lichtenthaler SF, Kuhn PH, Demuth HU, Hartlage-Rübsamen M, Roßner S, Leergaard T, Kreshuk A, Puchades MA, Bjaalie JG. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Frontiers in Neuroinformatics. 13: 75. PMID 31849633 DOI: 10.3389/fninf.2019.00075  0.88
2019 Puchades MA, Csucs G, Ledergerber D, Leergaard TB, Bjaalie JG. Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. Plos One. 14: e0216796. PMID 31141518 DOI: 10.1371/journal.pone.0216796  1
2019 Lillehaug S, Yetman MJ, Puchades MA, Checinska MM, Kleven H, Jankowsky JL, Bjaalie JG, Leergaard TB. Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines. Scientific Data. 6: 190028. PMID 30806643 DOI: 10.1038/sdata.2019.28  1
2018 Heiland T, Zeitschel U, Puchades MA, Kuhn PH, Lichtenthaler SF, Bjaalie JG, Hartlage-Rübsamen M, Roßner S, Höfling C. Defined astrocytic expression of human amyloid precursor protein in Tg2576 mouse brain. Glia. PMID 30485540 DOI: 10.1002/glia.23550  0.88
2018 Bjerke IE, Øvsthus M, Andersson KA, Blixhavn CH, Kleven H, Yates SC, Puchades MA, Bjaalie JG, Leergaard TB. Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies. Frontiers in Neuroanatomy. 12: 82. PMID 30450039 DOI: 10.3389/fnana.2018.00082  1
2018 Bjerke IE, Øvsthus M, Papp EA, Yates SC, Silvestri L, Fiorilli J, Pennartz CMA, Pavone FS, Puchades MA, Leergaard TB, Bjaalie JG. Data integration through brain atlasing: Human Brain Project tools and strategies. European Psychiatry : the Journal of the Association of European Psychiatrists. PMID 29519589 DOI: 10.1016/j.eurpsy.2018.02.004  1
2016 Schubert N, Axer M, Schober M, Huynh AM, Huysegoms M, Palomero-Gallagher N, Bjaalie JG, Leergaard TB, Kirlangic ME, Amunts K, Zilles K. 3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas. Frontiers in Neuroanatomy. 10: 51. PMID 27199682 DOI: 10.3389/fnana.2016.00051  1
2016 Papp EA, Leergaard TB, Csucs G, Bjaalie JG. Brain-Wide Mapping of Axonal Connections: Workflow for Automated Detection and Spatial Analysis of Labeling in Microscopic Sections. Frontiers in Neuroinformatics. 10: 11. PMID 27148038 DOI: 10.3389/fninf.2016.00011  1
2015 Zakiewicz IM, Majka P, Wójcik DK, Bjaalie JG, Leergaard TB. Three-Dimensional Histology Volume Reconstruction of Axonal Tract Tracing Data: Exploring Topographical Organization in Subcortical Projections from Rat Barrel Cortex. Plos One. 10: e0137571. PMID 26398192 DOI: 10.1371/journal.pone.0137571  1
2015 Yetman MJ, Lillehaug S, Bjaalie JG, Leergaard TB, Jankowsky JL. Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex. Brain Structure & Function. PMID 25869275 DOI: 10.1007/s00429-015-1040-9  1
2015 Tiesinga P, Bakker R, Hill S, Bjaalie JG. Feeding the human brain model. Current Opinion in Neurobiology. 32: 107-114. PMID 25725212 DOI: 10.1016/j.conb.2015.02.003  1
2015 Papp EA, Leergaard TB, Calabrese E, Johnson GA, Bjaalie JG. Addendum to “Waxholm Space atlas of the Sprague Dawley rat brain” [NeuroImage 97 (2014) 374-386]. Neuroimage. 105: 561-2. PMID 25635280  1
2015 Kjonigsen LJ, Lillehaug S, Bjaalie JG, Witter MP, Leergaard TB. Waxholm Space atlas of the rat brain hippocampal region: three-dimensional delineations based on magnetic resonance and diffusion tensor imaging. Neuroimage. 108: 441-9. PMID 25585022 DOI: 10.1016/j.neuroimage.2014.12.080  1
2015 Boccara CN, Kjonigsen LJ, Hammer IM, Bjaalie JG, Leergaard TB, Witter MP. A three-plane architectonic atlas of the rat hippocampal region. Hippocampus. 25: 838-57. PMID 25533645 DOI: 10.1002/hipo.22407  1
2015 Sergejeva M, Papp EA, Bakker R, Gaudnek MA, Okamura-Oho Y, Boline J, Bjaalie JG, Hess A. Anatomical landmarks for registration of experimental image data to volumetric rodent brain atlasing templates. Journal of Neuroscience Methods. 240: 161-9. PMID 25445058 DOI: 10.1016/j.jneumeth.2014.11.005  1
2014 Amunts K, Hawrylycz MJ, Van Essen DC, Van Horn JD, Harel N, Poline JB, De Martino F, Bjaalie JG, Dehaene-Lambertz G, Dehaene S, Valdes-Sosa P, Thirion B, Zilles K, Hill SL, Abrams MB, et al. Interoperable atlases of the human brain. Neuroimage. 99: 525-32. PMID 24936682 DOI: 10.1016/j.neuroimage.2014.06.010  1
2014 Papp EA, Leergaard TB, Calabrese E, Johnson GA, Bjaalie JG. Waxholm Space atlas of the Sprague Dawley rat brain. Neuroimage. 97: 374-86. PMID 24726336 DOI: 10.1016/j.neuroimage.2014.04.001  1
2014 Zakiewicz IM, Bjaalie JG, Leergaard TB. Brain-wide map of efferent projections from rat barrel cortex. Frontiers in Neuroinformatics. 8: 5. PMID 24550819 DOI: 10.3389/fninf.2014.00005  1
2014 Lillehaug S, Syverstad GH, Nilsson LN, Bjaalie JG, Leergaard TB, Torp R. Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice. Neurobiology of Aging. 35: 556-64. PMID 24126157 DOI: 10.1016/j.neurobiolaging.2013.09.013  1
2013 Nagelhus EA, Amiry-Moghaddam M, Bergersen LH, Bjaalie JG, Eriksson J, Gundersen V, Leergaard TB, Morth JP, Storm-Mathisen J, Torp R, Walhovd KB, Tønjum T. The glia doctrine: addressing the role of glial cells in healthy brain ageing. Mechanisms of Ageing and Development. 134: 449-59. PMID 24141107 DOI: 10.1016/j.mad.2013.10.001  1
2013 Stensrud MJ, Chaudhry FA, Leergaard TB, Bjaalie JG, Gundersen V. Vesicular glutamate transporter-3 in the rodent brain: Vesicular colocalization with vesicular γ-aminobutyric acid transporter Journal of Comparative Neurology. 521: 3042-3056. PMID 23633129 DOI: 10.1002/cne.23331  1
2013 White NS, Leergaard TB, D'Arceuil H, Bjaalie JG, Dale AM. Probing tissue microstructure with restriction spectrum imaging: Histological and theoretical validation. Human Brain Mapping. 34: 327-46. PMID 23169482 DOI: 10.1002/hbm.21454  1
2013 Hines KE, Bolle E, Rissi M, Volgyes D, Dorholt O, Røhne O, Stapnes S, Bjaalie JG, Skretting A. COMPET: High resolution high sensitivity MRI compatible pre-clinical PET scanner Nuclear Instruments and Methods in Physics Research, Section a: Accelerators, Spectrometers, Detectors and Associated Equipment. 732: 581-585. DOI: 10.1016/j.nima.2013.05.148  1
2012 Rissi M, Bolle E, Völgyes D, Bjaalie JG, Dorholt O, Hines KE, Rohne O, Skretting A, Stapnes S. Characterization of a high resolution and high sensitivity pre-clinical PET scanner with 3D event reconstruction Nuclear Instruments and Methods in Physics Research, Section a: Accelerators, Spectrometers, Detectors and Associated Equipment. 695: 135-138. DOI: 10.1016/j.nima.2011.10.042  1
2011 Zakiewicz IM, van Dongen YC, Leergaard TB, Bjaalie JG. Workflow and atlas system for brain-wide mapping of axonal connectivity in rat. Plos One. 6: e22669. PMID 21829640 DOI: 10.1371/journal.pone.0022669  1
2011 Kjonigsen LJ, Leergaard TB, Witter MP, Bjaalie JG. Digital atlas of anatomical subdivisions and boundaries of the rat hippocampal region. Frontiers in Neuroinformatics. 5: 2. PMID 21519393 DOI: 10.3389/fninf.2011.00002  1
2011 Odeh F, Leergaard TB, Boy J, Schmidt T, Riess O, Bjaalie JG. Atlas of transgenic Tet-Off Ca2+/calmodulin-dependent protein kinase II and prion protein promoter activity in the mouse brain Neuroimage. 54: 2603-2611. PMID 21093594 DOI: 10.1016/j.neuroimage.2010.11.032  1
2010 Leergaard TB, White NS, de Crespigny A, Bolstad I, D'Arceuil H, Bjaalie JG, Dale AM. Quantitative histological validation of diffusion MRI fiber orientation distributions in the rat brain. Plos One. 5: e8595. PMID 20062822 DOI: 10.1371/journal.pone.0008595  1
2008 Hjornevik T, Jacobsen LM, Qu H, Bjaalie JG, Gjerstad J, Willoch F. Metabolic plasticity in the supraspinal pain modulating circuitry after noxious stimulus-induced spinal cord LTP. Pain. 140: 456-64. PMID 19004552 DOI: 10.1016/j.pain.2008.09.029  0.32
2008 Bjaalie JG, Grillner S, Usui S. Neuroinformatics: databases, tools, and computational modeling for studying the nervous system. Neural Networks : the Official Journal of the International Neural Network Society. 21: 1045-6. PMID 18774691 DOI: 10.1016/j.neunet.2008.08.003  1
2007 Leergaard TB, Bjaalie JG. Topography of the complete corticopontine projection: from experiments to principal Maps. Frontiers in Neuroscience. 1: 211-23. PMID 18982130 DOI: 10.3389/neuro.  1
2007 Hjornevik T, Leergaard TB, Darine D, Moldestad O, Dale AM, Willoch F, Bjaalie JG. Three-dimensional atlas system for mouse and rat brain imaging data. Frontiers in Neuroinformatics. 1: 4. PMID 18974799 DOI: 10.3389/neuro.11.004.2007  1
2007 Bolstad I, Leergaard TB, Bjaalie JG. Branching of individual somatosensory cerebropontine axons in rat: evidence of divergence. Brain Structure & Function. 212: 85-93. PMID 17717700 DOI: 10.1007/s00429-007-0145-1  1
2007 Moene IA, Subramaniam S, Darin D, Leergaard TB, Bjaalie JG. Toward a workbench for rodent brain image data: systems architecture and design. Neuroinformatics. 5: 35-58. PMID 17426352  1
2007 Bjaalie JG, Grillner S. Global neuroinformatics: the International Neuroinformatics Coordinating Facility. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 3613-5. PMID 17409224 DOI: 10.1523/JNEUROSCI.0558-07.2007  1
2006 Leergaard TB, Lillehaug S, De Schutter E, Bower JM, Bjaalie JG. Topographical organization of pathways from somatosensory cortex through the pontine nuclei to tactile regions of the rat cerebellar hemispheres. The European Journal of Neuroscience. 24: 2801-12. PMID 17156205 DOI: 10.1111/j.1460-9568.2006.05150.x  1
2006 Boy J, Leergaard TB, Schmidt T, Odeh F, Bichelmeier U, Nuber S, Holzmann C, Wree A, Prusiner SB, Bujard H, Riess O, Bjaalie JG. Expression mapping of tetracycline-responsive prion protein promoter: digital atlasing for generating cell-specific disease models. Neuroimage. 33: 449-62. PMID 16931059 DOI: 10.1016/j.neuroimage.2006.05.055  1
2006 Bjaalie JG, Zilles K. New article category in anatomy and embryology: Methodological standards. Anatomy and Embryology. 211: 255. PMID 16850343 DOI: 10.1007/s00429-006-0106-0  1
2006 Bjaalie JG, Leergaard TB, Pettersen C. Micro3D: computer program for three-dimensional reconstruction visualization, and analysis of neuronal populations and barin regions. The International Journal of Neuroscience. 116: 515-40. PMID 16596747  1
2005 Zaborszky L, Buhl DL, Pobalashingham S, Bjaalie JG, Nadasdy Z. Three-dimensional chemoarchitecture of the basal forebrain: spatially specific association of cholinergic and calcium binding protein-containing neurons. Neuroscience. 136: 697-713. PMID 16344145 DOI: 10.1016/j.neuroscience.2005.05.019  1
2005 Bjaalie JG, Leergaard TB, Lillehaug S, Odeh F, Moene IA, Kjode JO, Darin D. Database and tools for analysis of topographic organization and map transformations in major projection systems of the brain. Neuroscience. 136: 681-95. PMID 16344144 DOI: 10.1016/j.neuroscience.2005.06.036  1
2005 Malmierca MS, Bjaalie JG, Mugnaini E. Theodor W. Blackstad (1925-2003): a pioneer in quantitative neuroanatomy. Neuroscience. 136: 601-6. PMID 16344137 DOI: 10.1016/j.neuroscience.2005.10.040  1
2005 Odeh F, Ackerley R, Bjaalie JG, Apps R. Pontine maps linking somatosensory and cerebellar cortices are in register with climbing fiber somatotopy. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 5680-90. PMID 15958734 DOI: 10.1523/JNEUROSCI.0558-05.2005  1
2005 Berg BG, Almaas TJ, Bjaalie JG, Mustaparta H. Projections of male-specific receptor neurons in the antennal lobe of the Oriental tobacco budworm moth, Helicoverpa assulta: a unique glomerular organization among related species. The Journal of Comparative Neurology. 486: 209-20. PMID 15844171 DOI: 10.1002/cne.20544  1
2004 Leergaard TB, Alloway KD, Pham TA, Bolstad I, Hoffer ZS, Pettersen C, Bjaalie JG. Three-dimensional topography of corticopontine projections from rat sensorimotor cortex: comparisons with corticostriatal projections reveal diverse integrative organization. The Journal of Comparative Neurology. 478: 306-22. PMID 15368533 DOI: 10.1002/cne.20289  1
2003 Eckersley P, Egan GF, Amari S, Beltrame F, Bennett R, Bjaalie JG, Dalkara T, De Schutter E, Gonzalez C, Grillner S, Herz A, Hoffmann KP, Jaaskelainen IP, Koslow SH, Lee SY, et al. Neuroscience data and tool sharing: a legal and policy framework for neuroinformatics. Neuroinformatics. 1: 149-65. PMID 15046238 DOI: 10.1007/s12021-003-0002-1  1
2003 Leergaard TB, Bjaalie JG, Devor A, Wald LL, Dale AM. In vivo tracing of major rat brain pathways using manganese-enhanced magnetic resonance imaging and three-dimensional digital atlasing. Neuroimage. 20: 1591-600. PMID 14642470 DOI: 10.1016/j.neuroimage.2003.07.009  1
2003 Bergersen L, Ruiz A, Bjaalie JG, Kullmann DM, Gundersen V. GABA and GABAA receptors at hippocampal mossy fibre synapses. The European Journal of Neuroscience. 18: 931-41. PMID 12925019 DOI: 10.1046/j.1460-9568.2003.02828.x  1
2003 Díaz C, Glover JC, Puelles L, Bjaalie JG. The relationship between hodological and cytoarchitectonic organization in the vestibular complex of the 11-day chicken embryo. The Journal of Comparative Neurology. 457: 87-105. PMID 12541327 DOI: 10.1002/cne.10528  1
2002 Amari S, Beltrame F, Bjaalie JG, Dalkara T, De Schutter E, Egan GF, Goddard NH, Gonzalez C, Grillner S, Herz A, Hoffmann KP, Jaaskelainen I, Koslow SH, Lee SY, Matthiessen L, et al. Neuroinformatics: the integration of shared databases and tools towards integrative neuroscience. Journal of Integrative Neuroscience. 1: 117-28. PMID 15011281  1
2002 Lillehaug S, Oyan D, Leergaard TB, Bjaalie JG. Comparison of semi-automatic and automatic data acquisition methods for studying three-dimensional distributions of large neuronal populations and axonal plexuses. Network (Bristol, England). 13: 343-56. PMID 12222818  1
2002 Brevik A, Leergaard TB, Svanevik M, Bjaalie JG. Three-dimensional computerised atlas of the rat brain stem precerebellar system: approaches for mapping, visualization, and comparison of spatial distribution data. Anatomy and Embryology. 204: 319-32. PMID 11720236 DOI: 10.1007/s004290100202  0.44
2001 De Schutter E, Bjaalie JG. Coding in the granular layer of the cerebellum. Progress in Brain Research. 130: 279-96. PMID 11480281 DOI: 10.1016/S0079-6123(01)30019-5  1
2001 Didier A, Carleton A, Bjaalie JG, Vincent JD, Ottersen OP, Storm-Mathisen J, Lledo PM. A dendrodendritic reciprocal synapse provides a recurrent excitatory connection in the olfactory bulb. Proceedings of the National Academy of Sciences of the United States of America. 98: 6441-6. PMID 11353824 DOI: 10.1073/pnas.101126398  1
2000 Leergaard TB, Alloway KD, Mutic JJ, Bjaalie JG. Three-dimensional topography of corticopontine projections from rat barrel cortex: correlations with corticostriatal organization. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: 8474-84. PMID 11069955  1
2000 Leergaard TB, Lyngstad KA, Thompson JH, Taeymans S, Vos BP, De Schutter E, Bower JM, Bjaalie JG. Rat somatosensory cerebropontocerebellar pathways: spatial relationships of the somatotopic map of the primary somatosensory cortex are preserved in a three-dimensional clustered pontine map. The Journal of Comparative Neurology. 422: 246-66. PMID 10842230 DOI: 10.1002/(SICI)1096-9861(20000626)422:2<246::AID-CNE7>3.0.CO;2-R  1
2000 Bjaalie JG, Leergaard TB, Schwarz C, Thier P. Functions of the pontine nuclei in cerebro-cerebellar communication (multiple letters) Trends in Neurosciences. 23: 152-153. PMID 10717672 DOI: 10.1016/S0166-2236(00)01555-1  1
1999 Bajo VM, Merchán MA, Malmierca MS, Nodal FR, Bjaalie JG. Topographic organization of the dorsal nucleus of the lateral lemniscus in the cat. The Journal of Comparative Neurology. 407: 349-66. PMID 10320216 DOI: 10.1002/(SICI)1096-9861(19990510)407:3<349::AID-CNE4>3.0.CO;2-5  1
1998 Malmierca MS, Leergaard TB, Bajo VM, Bjaalie JG, Merchán MA. Anatomic evidence of a three-dimensional mosaic pattern of tonotopic organization in the ventral complex of the lateral lemniscus in cat. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 18: 10603-18. PMID 9852596  1
1998 Gundersen V, Chaudhry FA, Bjaalie JG, Fonnum F, Ottersen OP, Storm-Mathisen J. Synaptic vesicular localization and exocytosis of L-aspartate in excitatory nerve terminals: a quantitative immunogold analysis in rat hippocampus. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 18: 6059-70. PMID 9698301  1
1998 Berg BG, Almaas TJ, Bjaalie JG, Mustaparta H. The macroglomerular complex of the antennal lobe in the tobacco budworm moth Heliothis virescens: Specified subdivision in four compartments according to information about biologically significant compounds Journal of Comparative Physiology - a Sensory, Neural, and Behavioral Physiology. 183: 669-682. DOI: 10.1007/s003590050290  1
1996 Leergaard TB, Lakke EA, Bjaalie JG. Topographical organization in the early postnatal corticopontine projection: a carbocyanine dye and 3-D computer reconstruction study in the rat. The Journal of Comparative Neurology. 361: 77-94. PMID 8550883 DOI: 10.1002/CNE.903610107  0.4
1995 Malmierca MS, Rees A, Le Beau FE, Bjaalie JG. Laminar organization of frequency-defined local axons within and between the inferior colliculi of the guinea pig. The Journal of Comparative Neurology. 357: 124-44. PMID 7673462 DOI: 10.1002/cne.903570112  1
1995 Leergaard TB, Bjaalie JG. Semi-automatic data acquisition for quantitative neuroanatomy. MicroTrace--computer programme for recording of the spatial distribution of neuronal populations. Neuroscience Research. 22: 231-43. PMID 7566704 DOI: 10.1016/0168-0102(95)00899-6  0.6
1983 Brodal P, Dietrichs E, Bjaalie JG, Nordby T, Walberg F. Is lectin-coupled horseradish peroxidase taken up and transported by undamaged as well as by damaged fibers in the central nervous system? Brain Research. 278: 1-9. PMID 6688963 DOI: 10.1016/0006-8993(83)90221-4  1
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