Jorge Alegre-Cebollada - Related publications

Affiliations: 
2008-2014 Department of Biological Sc Columbia University, New York, NY 
 2014- CNIC Spain 
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2020 Avestan MS, Javidi A, Ganote LP, Brown JM, Stan G. Kinetic effects in directional proteasomal degradation of the green fluorescent protein. The Journal of Chemical Physics. 153: 105101. PMID 32933274 DOI: 10.1063/5.0015191   
2020 Sharma S, Subramani S, Popa I. Does protein unfolding play a functional role in vivo? The Febs Journal. PMID 32761965 DOI: 10.1111/febs.15508   
2020 Elfageih R, Karyolaimos A, Kemp G, de Gier JW, von Heijne G, Kudva R. Cotranslational folding of alkaline phosphatase in the periplasm of Escherichia coli. Protein Science : a Publication of the Protein Society. PMID 32790204 DOI: 10.1002/pro.3927   
2020 Nash MA. Single-molecule and Single-cell Approaches in Molecular Bioengineering. Chimia. 74: 704-709. PMID 32958108 DOI: 10.2533/chimia.2020.704   
2020 Elayan H, Eckford AW, Adve R. Information Rates of Controlled Protein Interactions Using Terahertz Communication. Ieee Transactions On Nanobioscience. PMID 32886612 DOI: 10.1109/TNB.2020.3021825   
2020 Lipsh-Sokolik R, Listov D, Fleishman SJ. The AbDesign computational pipeline for modular backbone assembly and design of binders and enzymes. Protein Science : a Publication of the Protein Society. PMID 33040418 DOI: 10.1002/pro.3970   
2020 Ma Y, Lee CJ, Park JS. Strategies for Optimizing the Production of Proteins and Peptides with Multiple Disulfide Bonds. Antibiotics (Basel, Switzerland). 9. PMID 32858882 DOI: 10.3390/antibiotics9090541   
2020 Knight M, Woolley R, Kwok A, Parsons S, Jones H, Gulacsy C, Phaal P, Kassaar O, Dawkins K, Rodriguez E, Marques A, Bowsher L, Wells SA, Watts A, van den Elsen JM, et al. Monoclonal antibody stability can be usefully monitored using the excitation-energy-dependent fluorescence edge-shift. The Biochemical Journal. PMID 32869839 DOI: 10.1042/BCJ20200580   
2020 Curnow P, Hardy BJ, Dufour V, Arthur CJ, Stenner R, Hodgson LR, Verkade P, Williams C, Shoemark DK, Sessions RB, Crump MP, Jones MR, Anderson JLR. Small-residue packing motifs modulate the structure and function of a minimal de novo membrane protein. Scientific Reports. 10: 15203. PMID 32938984 DOI: 10.1038/s41598-020-71585-8   
2020 Morgan IL, Avinery R, Rahamim G, Beck R, Saleh OA. Glassy Dynamics and Memory Effects in an Intrinsically Disordered Protein Construct. Physical Review Letters. 125: 058001. PMID 32794838 DOI: 10.1103/PhysRevLett.125.058001   
2020 Deng S, Marmorstein R. Protein N-Terminal Acetylation: Structural Basis, Mechanism, Versatility, and Regulation. Trends in Biochemical Sciences. PMID 32912665 DOI: 10.1016/j.tibs.2020.08.005   
2020 Josephson B, Fehl C, Isenegger PG, Nadal S, Wright TH, Poh AWJ, Bower BJ, Giltrap AM, Chen L, Batchelor-McAuley C, Roper G, Arisa O, Sap JBI, Kawamura A, Baldwin AJ, et al. Light-driven post-translational installation of reactive protein side chains. Nature. 585: 530-537. PMID 32968259 DOI: 10.1038/s41586-020-2733-7   
2020 Singh A, Thakur M, Singh SK, Sharma LK, Chandra K. Exploring the effect of nsSNPs in human YPEL3 gene in cellular senescence. Scientific Reports. 10: 15301. PMID 32943700 DOI: 10.1038/s41598-020-72333-8   
2020 Lazim R, Suh D, Choi S. Advances in Molecular Dynamics Simulations and Enhanced Sampling Methods for the Study of Protein Systems. International Journal of Molecular Sciences. 21. PMID 32882859 DOI: 10.3390/ijms21176339   
2020 Tian H, Trozzi F, Zoltowski BD, Tao P. Deciphering the Allosteric Process of Aureochrome 1a LOV Domain. The Journal of Physical Chemistry. B. PMID 32970438 DOI: 10.1021/acs.jpcb.0c05842   
2020 Tse C, Wickstrom L, Kvaratskhelia M, Gallicchio E, Levy R, Deng N. Exploring the Free-Energy Landscape and Thermodynamics of Protein-Protein Association. Biophysical Journal. PMID 32877664 DOI: 10.1016/j.bpj.2020.08.005   
2020 Zheng T, Yang Y, Castañeda CA. Structure, dynamics and functions of UBQLNs: at the crossroads of protein quality control machinery. The Biochemical Journal. 477: 3471-3497. PMID 32965492 DOI: 10.1042/BCJ20190497   
2020 Stollar EJ, Smith DP. Uncovering protein structure. Essays in Biochemistry. PMID 32975287 DOI: 10.1042/EBC20190042   
2020 Ren H. Genetically encoded selective cross-linkers and emerging applications. Biochemical Society Transactions. 48: 1807-1817. PMID 32657352 DOI: 10.1042/BST20200508   
2020 Huang X, Qu R, Ouyang J, Zhong S, Dai J. An Overview of the Cytoskeleton-Associated Role of PDLIM5. Frontiers in Physiology. 11: 975. PMID 32848888 DOI: 10.3389/fphys.2020.00975   
2020 Gagaoua M, Bonnet M, Picard B. Protein Array-Based Approach to Evaluate Biomarkers of Beef Tenderness and Marbling in Cows: Understanding of the Underlying Mechanisms and Prediction. Foods (Basel, Switzerland). 9. PMID 32858893 DOI: 10.3390/foods9091180   
2020 Di Costanzo L, Geremia S. Atomic Details of Carbon-Based Nanomolecules Interacting with Proteins. Molecules (Basel, Switzerland). 25. PMID 32759758 DOI: 10.3390/molecules25153555   
2020 Zhao V, Jacobs WM, Shakhnovich EI. Effect of Protein Structure on Evolution of Cotranslational Folding. Biophysical Journal. PMID 32857962 DOI: 10.1016/j.bpj.2020.06.037   
2020 Mirela-Bota P, Aguirre-Plans J, Meseguer A, Galletti C, Segura J, Planas-Iglesias J, Garcia-Garcia J, Guney E, Oliva B, Fernandez-Fuentes N. Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data. Journal of Molecular Biology. PMID 32976910 DOI: 10.1016/j.jmb.2020.09.015   
2020 Miyamae Y, Chen LC, Utsugi Y, Farrants H, Wandless TJ. A Method for Conditional Regulation of Protein Stability in Native or Near-Native Form. Cell Chemical Biology. PMID 33007216 DOI: 10.1016/j.chembiol.2020.09.004   
2020 Tan KT, Chan HJ, Lin XH, Fan SY, Hwu JR. Rapid and Selective Labeling of Endogenous Transmembrane Proteins in Living Cells with Difluorophenyl Ester Affinity-Based Probe. Chemistry, An Asian Journal. PMID 32931625 DOI: 10.1002/asia.202001049   
2020 Kihara S, Ghosh S, McDougall DR, Whitten AE, Mata JP, Köper I, McGillivray DJ. Structure of soft and hard protein corona around polystyrene nanoplastics-Particle size and protein types. Biointerphases. 15: 051002. PMID 32948094 DOI: 10.1116/6.0000404   
2020 Gorka M, Cherepanov DA, Semenov AY, Golbeck JH. Control of electron transfer by protein dynamics in photosynthetic reaction centers. Critical Reviews in Biochemistry and Molecular Biology. 1-44. PMID 32883115 DOI: 10.1080/10409238.2020.1810623   
2020 Liu H, Fu H, Shao X, Cai W, Chipot C. Accurate Description of Cation-π Interactions in Proteins with a Non-Polarizable Force Field at no Additional Cost. Journal of Chemical Theory and Computation. PMID 32852943 DOI: 10.1021/acs.jctc.0c00637   
2020 Meseguer A, Dominguez L, Bota PM, Aguirre-Plans J, Bonet J, Fernandez-Fuentes N, Oliva B. Using collections of structural models to predict changes of binding affinity caused by mutations in protein-protein interactions. Protein Science : a Publication of the Protein Society. PMID 32797645 DOI: 10.1002/pro.3930   
2020 Pritišanac I, Zarin T, Forman-Kay JD, Moses AM. Whence Blobs? Phylogenetics of functional protein condensates. Biochemical Society Transactions. PMID 32985656 DOI: 10.1042/BST20200355   
2020 Shin G, Lim SI. Site-specific proximity ligation provides molecular insights into biologically relevant interfaces of protein-protein interaction. Biochemical and Biophysical Research Communications. PMID 33008597 DOI: 10.1016/j.bbrc.2020.09.097   
2020 Shin G, Lim SI. Site-specific proximity ligation provides molecular insights into biologically relevant interfaces of protein-protein interaction. Biochemical and Biophysical Research Communications. PMID 33008597 DOI: 10.1016/j.bbrc.2020.09.097   
2020 Ding Y, Ball KA, Webb KJ, Gao Y, D'Alessandro A, Old WM, Stowell MHB, Ding X. On-Chip Acousto Thermal Shift Assay for Rapid and Sensitive Assessment of Protein Thermodynamic Stability. Small (Weinheim An Der Bergstrasse, Germany). e2003506. PMID 32893496 DOI: 10.1002/smll.202003506   
2020 Paul S, Paul S. In silico study of osmolytic effects of choline-O-sulfate on urea induced unfolding of Trp-cage mini-protein: An atomistic view from replica exchange molecular dynamics simulation. Archives of Biochemistry and Biophysics. 108484. PMID 32883513 DOI: 10.1016/j.abb.2020.108484   
2020 Arooj M, Shehadi I, Nassab CN, Mohamed AA. Physicochemical stability study of protein-benzoic acid complexes using molecular dynamics simulations. Amino Acids. 52: 1353-1362. PMID 33006112 DOI: 10.1007/s00726-020-02897-2   
2020 Zheng Q, Wang M, Zhang L, Ahmad W, Li H, Tong Y, Zheng G, Zhu S. Topology engineering via protein catenane construction to strengthen an industrial biocatalyst. Journal of Biotechnology. PMID 33065139 DOI: 10.1016/j.jbiotec.2020.10.012   
2020 Kocyła A, Tran JB, Krężel A. Galvanization of Protein-Protein Interactions in a Dynamic Zinc Interactome. Trends in Biochemical Sciences. PMID 32958327 DOI: 10.1016/j.tibs.2020.08.011   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Cong J, Cui J, Zhang H, Dzah CS, He Y, Duan Y. Binding affinity, antioxidative capacity and in vitro digestion of complexes of grape seed procyanidins and pork, chicken and fish protein. Food Research International (Ottawa, Ont.). 136: 109530. PMID 32846594 DOI: 10.1016/j.foodres.2020.109530   
2020 Mendes LFS, Fontana NA, Reddy ST, Uversky VN, Costa-Filho AJ. The exquisite structural biophysics of the Golgi reassembly and stacking proteins. International Journal of Biological Macromolecules. PMID 32871120 DOI: 10.1016/j.ijbiomac.2020.08.203   
2020 Mendes LFS, Fontana NA, Reddy ST, Uversky VN, Costa-Filho AJ. The exquisite structural biophysics of the Golgi reassembly and stacking proteins. International Journal of Biological Macromolecules. PMID 32871120 DOI: 10.1016/j.ijbiomac.2020.08.203   
2020 Vakser IA. Challenges in protein docking. Current Opinion in Structural Biology. 64: 160-165. PMID 32836051 DOI: 10.1016/j.sbi.2020.07.001   
2020 Bowman MA, Riback JA, Rodriguez A, Guo H, Li J, Sosnick TR, Clark PL. Properties of protein unfolded states suggest broad selection for expanded conformational ensembles. Proceedings of the National Academy of Sciences of the United States of America. PMID 32879005 DOI: 10.1073/pnas.2003773117   
2020 Misra SK, Sharp JS. Enabling Real-Time Compensation in Fast Photochemical Oxidations of Proteins for the Determination of Protein Topography Changes. Journal of Visualized Experiments : Jove. PMID 32955502 DOI: 10.3791/61580   
2020 Chowdhury R, Grisewood MJ, Boorla VS, Yan Q, Pfleger BF, Maranas CD. IPRO+/-: Computational Protein Design Tool Allowing for Insertions and Deletions. Structure (London, England : 1993). PMID 32857964 DOI: 10.1016/j.str.2020.08.003   
2020 Banyuls N, Quan Y, González-Martínez RM, Hernández-Martínez P, Ferré J. Effect of substitutions of key residues on the stability and the insecticidal activity of Vip3Af from Bacillus thuringiensis. Journal of Invertebrate Pathology. 107439. PMID 32663546 DOI: 10.1016/j.jip.2020.107439   
2020 Banyuls N, Quan Y, González-Martínez RM, Hernández-Martínez P, Ferré J. Effect of substitutions of key residues on the stability and the insecticidal activity of Vip3Af from Bacillus thuringiensis. Journal of Invertebrate Pathology. 107439. PMID 32663546 DOI: 10.1016/j.jip.2020.107439   
2020 Liu J, Cheng R, Van Eps N, Wang N, Morizumi T, Ou WL, Klauser P, Rozovsky S, Ernst OP, Wang L. Genetically Encoded Quinone Methides Enabling Rapid, Site-specific, and Photo-controlled Protein Modification with Amine Reagents. Journal of the American Chemical Society. PMID 32915556 DOI: 10.1021/jacs.0c06820