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Rafael Tapia-Rojo - Publications

Affiliations: 
2016- Department of Biological Sc Columbia University, New York, NY 
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28/32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Tapia-Rojo R, Mora M, Garcia-Manyes S. Single-molecule magnetic tweezers to probe the equilibrium dynamics of individual proteins at physiologically relevant forces and timescales. Nature Protocols. PMID 38467905 DOI: 10.1038/s41596-024-00965-5  0.773
2024 Tapia-Rojo R, Alonso-Caballero A, Badilla CL, Fernandez JM. Identical Sequences, Different Behaviors: Protein Diversity Captured at the Single-Molecule Level. Biophysical Journal. PMID 38409780 DOI: 10.1016/j.bpj.2024.02.020  0.822
2024 Darrigrand JF, Salowka A, Torres-Cano A, Tapia-Rojo R, Zhu T, Garcia-Manyes S, Spagnoli FM. Acinar-ductal cell rearrangement drives branching morphogenesis of the murine pancreas in an IGF/PI3K-dependent manner. Developmental Cell. PMID 38237591 DOI: 10.1016/j.devcel.2023.12.011  0.584
2023 Mora M, Tapia-Rojo R, Garcia-Manyes S. Unfolding and Refolding Proteins Using Single-Molecule AFM. Methods in Molecular Biology (Clifton, N.J.). 2694: 339-354. PMID 37824012 DOI: 10.1007/978-1-0716-3377-9_16  0.764
2023 Bernabé-Rubio M, Ali S, Bhosale PG, Goss G, Mobasseri SA, Tapia-Rojo R, Zhu T, Hiratsuka T, Battilocchi M, Tomás IM, Ganier C, Garcia-Manyes S, Watt FM. Myc-dependent dedifferentiation of Gata6 epidermal cells resembles reversal of terminal differentiation. Nature Cell Biology. PMID 37735598 DOI: 10.1038/s41556-023-01234-5  0.577
2023 Franz F, Tapia-Rojo R, Winograd-Katz S, Boujemaa-Paterski R, Li W, Unger T, Albeck S, Aponte-Santamaria C, Garcia-Manyes S, Medalia O, Geiger B, Gräter F. Allosteric activation of vinculin by talin. Nature Communications. 14: 4311. PMID 37463895 DOI: 10.1038/s41467-023-39646-4  0.715
2022 Tapia-Rojo R, Mora M, Board S, Walker J, Boujemaa-Paterski R, Medalia O, Garcia-Manyes S. Enhanced statistical sampling reveals microscopic complexity in the talin mechanosensor folding energy landscape. Nature Physics. 19: 52-60. PMID 36660164 DOI: 10.1038/s41567-022-01808-4  0.692
2020 Alonso-Caballero A, Echelman DJ, Tapia-Rojo R, Haldar S, Eckels EC, Fernandez JM. Protein folding modulates the chemical reactivity of a Gram-positive adhesin. Nature Chemistry. PMID 33257887 DOI: 10.1038/s41557-020-00586-x  0.754
2020 Tapia-Rojo R, Alonso-Caballero Á, Fernández JM. Talin folding as the tuning fork of cellular mechanotransduction. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817549 DOI: 10.1073/Pnas.2004091117  0.833
2020 Tapia-Rojo R, Alonso-Caballero A, Fernandez JM. Direct observation of a coil-to-helix contraction triggered by vinculin binding to talin. Science Advances. 6: eaaz4707. PMID 32494739 DOI: 10.1126/Sciadv.Aaz4707  0.81
2020 Rivas-Pardo JA, Li Y, Mártonfalvi Z, Tapia-Rojo R, Unger A, Fernández-Trasancos Á, Herrero-Galán E, Velázquez-Carreras D, Fernández JM, Linke WA, Alegre-Cebollada J. A HaloTag-TEV genetic cassette for mechanical phenotyping of proteins from tissues. Nature Communications. 11: 2060. PMID 32345978 DOI: 10.1038/S41467-020-15465-9  0.834
2020 Alonso-Caballero A, Tapia-Rojo R, Badilla CL, Fernandez JM. High Force Magnetic Tweezers Reveal That Bacterial Adhesion Pili Act as Megadalton-scale Schock Absorbers Biophysical Journal. 118: 33a-34a. DOI: 10.1016/J.Bpj.2019.11.361  0.801
2019 Tapia-Rojo R, Mazo JJ, Falo F. Thermal versus mechanical unfolding in a model protein. The Journal of Chemical Physics. 151: 185105. PMID 31731855 DOI: 10.1063/1.5126071  0.614
2019 Eckels EC, Haldar S, Tapia-Rojo R, Rivas-Pardo JA, Fernández JM. The Mechanical Power of Titin Folding. Cell Reports. 27: 1836-1847.e4. PMID 31067467 DOI: 10.1016/J.Celrep.2019.04.046  0.811
2019 Tapia-Rojo R, Eckels EC, Fernández JM. Ephemeral states in protein folding under force captured with a magnetic tweezers design. Proceedings of the National Academy of Sciences of the United States of America. PMID 30936303 DOI: 10.1073/Pnas.1821284116  0.826
2019 Rivas-Pardo JA, Li Y, Mártonfalvi Z, Tapia-Rojo R, Unger A, Fernández-Trasancos Á, Herrero-Galán E, Velázquez-Carreras D, Linke WA, Fernández JM, Alegre-Cebollada J. Abstract 330: A HaloTag-TEV Genetic Cassette for Mechanically Probing Native Titin Circulation Research. 125. DOI: 10.1161/Res.125.Suppl_1.330  0.637
2019 Echelman DJ, Alonso A, Haldar S, Tapia-Rojo R, Eckels EC, Fernandez JM. Mechanical Forces are a Reactivity Switch for an Adhesin Thioester Bond Biophysical Journal. 116: 544a. DOI: 10.1016/J.Bpj.2018.11.2927  0.801
2018 Rivas-Pardo JA, Badilla CL, Tapia-Rojo R, Alonso-Caballero Á, Fernández JM. Molecular strategy for blocking isopeptide bond formation in nascent pilin proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30150415 DOI: 10.1073/Pnas.1807689115  0.819
2018 Eckels EC, Tapia-Rojo R, Rivas-Pardo JA, Fernández JM. The Work of Titin Protein Folding as a Major Driver in Muscle Contraction. Annual Review of Physiology. 80: 327-351. PMID 29433413 DOI: 10.1146/Annurev-Physiol-021317-121254  0.823
2018 Tapia-Rojo R, Andres RIvas-Pardo J, Fernandez JM. An Electromagnetic Tweezers for Studying Fast Protein Folding Dynamics Biophysical Journal. 114: 385a. DOI: 10.1016/J.Bpj.2017.11.2129  0.421
2017 Haldar S, Tapia-Rojo R, Eckels EC, Valle-Orero J, Fernandez JM. Trigger factor chaperone acts as a mechanical foldase. Nature Communications. 8: 668. PMID 28939815 DOI: 10.1038/S41467-017-00771-6  0.805
2017 Valle-Orero J, Tapia-Rojo R, Eckels EC, Rivas-Pardo JA, Popa I, Fernandez JM. Proteins Breaking Bad: A Free Energy Perspective. The Journal of Physical Chemistry Letters. PMID 28723106 DOI: 10.1021/Acs.Jpclett.7B01509  0.78
2017 Valle Orero J, Rivas-Pardo JA, Tapia-Rojo R, Popa I, Echelman DJ, Haldar S, Fernandez JM. Mechanical deformation accelerates protein ageing. Angewandte Chemie (International Ed. in English). PMID 28470663 DOI: 10.1002/Anie.201703630  0.774
2017 Tapia-Rojo R, Marcuello C, Lostao A, Gómez-Moreno C, J Mazo J, Falo F. A physical picture for mechanical dissociation of biological complexes: from forces to free energies. Physical Chemistry Chemical Physics : Pccp. 19: 4567-4575. PMID 28124058 DOI: 10.1039/C6Cp07508H  0.482
2017 Valle Orero J, Rivas-Pardo JA, Tapia-Rojo R, Popa I, Echelman DJ, Fernandez JM. Protein Aging: Loss of Folding Contraction due to Oxidation of Cryptic Side Chains Biophysical Journal. 112: 490a. DOI: 10.1016/J.Bpj.2016.11.2651  0.757
2017 Haldar S, Tapia-Rojo R, Fernandez JM. Trigger Factor Boosts the Work Done by Protein Folding under Force Biophysical Journal. 112: 41a. DOI: 10.1016/J.Bpj.2016.11.261  0.833
2014 Tapia-Rojo R, Arregui S, Mazo JJ, Falo F. Mechanical unfolding of a simple model protein goes beyond the reach of one-dimensional descriptions. Journal of Chemical Physics. 141: 135102. PMID 25296840 DOI: 10.1063/1.4896620  0.369
2014 Tapia-Rojo R, Mazo JJ, Hernández JÁ, Peleato ML, Fillat MF, Falo F. Mesoscopic model and free energy landscape for protein-DNA binding sites: analysis of cyanobacterial promoters. Plos Computational Biology. 10: e1003835. PMID 25275384 DOI: 10.1371/Journal.Pcbi.1003835  0.345
Low-probability matches (unlikely to be authored by this person)
2017 de Miguel A, Tapia-Rojo R, Utesch T, Mroginski MA. Structure, dynamics and kinetics of two-component Lantibiotic Lichenicidin. Plos One. 12: e0179962. PMID 28654661 DOI: 10.1371/Journal.Pone.0179962  0.288
2010 Tapia-Rojo R, Mazo JJ, Falo F. Thermal and mechanical properties of a DNA model with solvation barrier. Physical Review E. 82: 31916. PMID 21230117 DOI: 10.1103/Physreve.82.031916  0.268
2012 Tapia-Rojo R, Prada-Gracia D, Mazo JJ, Falo F. Mesoscopic model for free-energy-landscape analysis of DNA sequences. Physical Review E. 86: 21908. PMID 23005786 DOI: 10.1103/Physreve.86.021908  0.232
2024 Tapia-Rojo R. Construction and operation of high-resolution magnetic tape head tweezers for measuring single-protein dynamics under force. Methods in Enzymology. 694: 83-107. PMID 38492959 DOI: 10.1016/bs.mie.2023.12.010  0.12
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