Ionel Popa - Related publications

Affiliations: 
2010-2015 Department of Biological Sc Columbia University, New York, NY 
 2015- University of Wisconsin, Milwaukee 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Wang H, Shen B, Song Y, Lee M, Zhang W. Nanomechanical Properties of a Supramolecular Helix Stabilized by Non-Covalent Interactions. Macromolecular Rapid Communications. e2000453. PMID 32902027 DOI: 10.1002/marc.202000453   
2020 Suzuki K, Inamuro T, Yoshino M. Asymptotic equivalence of forcing terms in the lattice Boltzmann method within second-order accuracy. Physical Review. E. 102: 013308. PMID 32794911 DOI: 10.1103/PhysRevE.102.013308   
2020 Zhang Y, Lin Z, Fang Y, Wu J. Prediction of Catch-Slip Bond Transition of Kindlin2/β3-integrin via Steered Molecular Dynamics Simulation. Journal of Chemical Information and Modeling. PMID 32877187 DOI: 10.1021/acs.jcim.0c00837   
2020 Liu Z, Liu H, Vera AM, Bernardi RC, Tinnefeld P, Nash MA. High force catch bond mechanism of bacterial adhesion in the human gut. Nature Communications. 11: 4321. PMID 32859904 DOI: 10.1038/s41467-020-18063-x   
2020 Zhou YH, Tan QS, Fang XM, Huang JF, Liao JQ. Spectrometric detection of weak forces in cavity optomechanics. Optics Express. 28: 28620-28634. PMID 32988129 DOI: 10.1364/OE.398161   
2020 Duboué-Dijon E, Javanainen M, Delcroix P, Jungwirth P, Martinez-Seara H. A practical guide to biologically relevant molecular simulations with charge scaling for electronic polarization. The Journal of Chemical Physics. 153: 050901. PMID 32770904 DOI: 10.1063/5.0017775   
2020 Sauceda HE, Gastegger M, Chmiela S, Müller KR, Tkatchenko A. Molecular force fields with gradient-domain machine learning (GDML): Comparison and synergies with classical force fields. The Journal of Chemical Physics. 153: 124109. PMID 33003761 DOI: 10.1063/5.0023005   
2020 da Silva GCQ, Silva GM, Tavares FW, Fleming FP, Horta BAC. Are all-atom any better than united-atom force fields for the description of liquid properties of alkanes? Journal of Molecular Modeling. 26: 296. PMID 33026509 DOI: 10.1007/s00894-020-04548-5   
2020 da Silva GCQ, Silva GM, Tavares FW, Fleming FP, Horta BAC. Are all-atom any better than united-atom force fields for the description of liquid properties of alkanes? Journal of Molecular Modeling. 26: 296. PMID 33026509 DOI: 10.1007/s00894-020-04548-5   
2020 Zhou HX. Determination of Condensate Material Properties from Droplet Deformation. The Journal of Physical Chemistry. B. PMID 32857503 DOI: 10.1021/acs.jpcb.0c06230   
2020 Liu Y, Shi M, Feng K, Sepahvand KK, Marburg S. Stabilizing near-field acoustic levitation: Investigation of non-linear restoring force generated by asymmetric gas squeeze film. The Journal of the Acoustical Society of America. 148: 1468. PMID 33003842 DOI: 10.1121/10.0001963   
2020 Trushko A, Di Meglio I, Merzouki A, Blanch-Mercader C, Abuhattum S, Guck J, Alessandri K, Nassoy P, Kruse K, Chopard B, Roux A. Buckling of an Epithelium Growing under Spherical Confinement. Developmental Cell. PMID 32800097 DOI: 10.1016/j.devcel.2020.07.019   
2020 van der Spoel D, Henschel H, van Maaren PJ, Ghahremanpour MM, Costa LT. A potential for molecular simulation of compounds with linear moieties. The Journal of Chemical Physics. 153: 084503. PMID 32872881 DOI: 10.1063/5.0015184   
2020 O'Hearn KA, Swift MW, Liu J, Magoulas I, Piecuch P, van Duin ACT, Aktulga HM, Qi Y. Optimization of the Reax force field for the lithium-oxygen system using a high fidelity charge model. The Journal of Chemical Physics. 153: 084107. PMID 32872856 DOI: 10.1063/5.0014406   
2020 Gao M, Perepezko JH. Mapping the viscoelastic heterogeneity at the nanoscale in metallic glasses by static force spectroscopy. Nano Letters. PMID 32970446 DOI: 10.1021/acs.nanolett.0c03026   
2020 Wei H, Qi R, Wang J, Cieplak P, Duan Y, Luo R. Efficient formulation of polarizable Gaussian multipole electrostatics for biomolecular simulations. The Journal of Chemical Physics. 153: 114116. PMID 32962395 DOI: 10.1063/5.0019560   
2020 Zhang G, Li P, Wei D, Hu K, Qiu X. Lateral force calibration for atomic force microscope cantilevers using a suspended nanowire. Nanotechnology. 31: 475703. PMID 32885790 DOI: 10.1088/1361-6528/abae32   
2020 Patel D, Marx D, East A. Improving Yield and Rate of Acid-Catalyzed Deconstruction of Lignin by Mechanochemical Activation. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 32845560 DOI: 10.1002/cphc.202000671   
2020 Cenedese M, Haller G. Stability of forced-damped response in mechanical systems from a Melnikov analysis. Chaos (Woodbury, N.Y.). 30: 083103. PMID 32872819 DOI: 10.1063/5.0012480   
2020 Seth S, Bhattacharya A. Polymer escape through a three dimensional double-nanopore system. The Journal of Chemical Physics. 153: 104901. PMID 32933266 DOI: 10.1063/5.0015310   
2020 Innes-Gold SN, Berezney JP, Saleh OA. Single-Molecule Stretching Shows Glycosylation Sets Tension in the Hyaluronan-Aggrecan Bottlebrush. Biophysical Journal. 119: 1351-1358. PMID 32918890 DOI: 10.1016/j.bpj.2020.08.016   
2020 Nampoothiri JN, Wang Y, Ramola K, Zhang J, Bhattacharjee S, Chakraborty B. Emergent Elasticity in Amorphous Solids. Physical Review Letters. 125: 118002. PMID 32975961 DOI: 10.1103/PhysRevLett.125.118002   
2020 Jacobson DR, Perkins TT. Correcting molecular transition rates measured by single-molecule force spectroscopy for limited temporal resolution. Physical Review. E. 102: 022402. PMID 32942397 DOI: 10.1103/PhysRevE.102.022402   
2020 Aghdasi P, Ansari R, Rouhi S, Yousefi S. A DFT-based finite element approach for studying elastic properties, buckling and vibration of the arsenene. Journal of Molecular Graphics & Modelling. 101: 107725. PMID 32911118 DOI: 10.1016/j.jmgm.2020.107725   
2020 Pattnaik P, Raghunathan S, Kalluri T, Bhimalapuram P, Jawahar CV, Priyakumar UD. Machine Learning for Accurate Force Calculations in Molecular Dynamics Simulations. The Journal of Physical Chemistry. A. 124: 6954-6967. PMID 32786995 DOI: 10.1021/acs.jpca.0c03926   
2020 Zhang P, Qu J. Forced guided waves in linearly elastic plates (I) - An examination of the normal-mode expansion method. Ultrasonics. 106231. PMID 32771336 DOI: 10.1016/j.ultras.2020.106231   
2020 Alam ME, Wu D, Dickerson AK. Predictive modelling of drop ejection from damped, dampened wings by machine learning. Proceedings. Mathematical, Physical, and Engineering Sciences. 476: 20200467. PMID 33071591 DOI: 10.1098/rspa.2020.0467   
2020 Qu C, Wang K, Wang J, Gongyang Y, Carpick RW, Urbakh M, Zheng Q. Origin of Friction in Superlubric Graphite Contacts. Physical Review Letters. 125: 126102. PMID 33016762 DOI: 10.1103/PhysRevLett.125.126102   
2020 Bonfanti S, Chattoraj J, Guerra R, Procaccia I, Zapperi S. Oscillatory instabilities in three-dimensional frictional granular matter. Physical Review. E. 101: 052902. PMID 32575318 DOI: 10.1103/PhysRevE.101.052902   
2020 Shan Y, Liu L, Liu Y, Harms H, Wick LY. Effects of Electrokinetic Phenomena on Bacterial Deposition Monitored by Quartz Crystal Microbalance with Dissipation Monitoring. Environmental Science & Technology. PMID 33044809 DOI: 10.1021/acs.est.0c04347   
2020 Zha J, Yuan Z, Zhang H, Li Y, Chen Y. Nickel-Based Alloy Dry Milling Process Induced Material Softening Effect. Materials (Basel, Switzerland). 13. PMID 32854361 DOI: 10.3390/ma13173758   
2020 Stanciu MD, Teodorescu HD, Vlase S. Degradation of Mechanical Properties of Pine Wood Under Symmetric Axial Cyclic Loading Parallel to Grain. Polymers. 12. PMID 32977665 DOI: 10.3390/polym12102176   
2020 Aasen A, Hammer M, Müller EA, Wilhelmsen Ø. Equation of state and force fields for Feynman-Hibbs-corrected Mie fluids. II. Application to mixtures of helium, neon, hydrogen, and deuterium. The Journal of Chemical Physics. 152: 074507. PMID 32087642 DOI: 10.1063/1.5136079   
2020 Patel SH, Yim W, Garg AK, Shah SH, Jokerst JV, Chao DL. Assessing the Physiological Relevance of Cough Simulators for Respiratory Droplet Dispersion. Journal of Clinical Medicine. 9. PMID 32957639 DOI: 10.3390/jcm9093002   
2020 Mohebifar M, Rowley CN. An efficient and accurate model for water with an improved non-bonded potential. The Journal of Chemical Physics. 153: 134105. PMID 33032419 DOI: 10.1063/5.0014469   
2020 Zhang X, Ren W. Modeling and Experimental Verification of Material Welding Characteristics for Low Current Switching Devices. Materials (Basel, Switzerland). 13. PMID 32825129 DOI: 10.3390/ma13173666   
2020 Stroylov V, Panova M, Toukach P. Comparison of Methods for Bulk Automated Simulation of Glycosidic Bond Conformations. International Journal of Molecular Sciences. 21. PMID 33076365 DOI: 10.3390/ijms21207626   
2020 Takada S, Hayakawa H, Santos A, Garzó V. Enskog kinetic theory of rheology for a moderately dense inertial suspension. Physical Review. E. 102: 022907. PMID 32942481 DOI: 10.1103/PhysRevE.102.022907   
2020 Nguyen B, Seifert U. Exponential volume dependence of entropy-current fluctuations at first-order phase transitions in chemical reaction networks. Physical Review. E. 102: 022101. PMID 32942421 DOI: 10.1103/PhysRevE.102.022101   
2020 Ali F, Hou Y, Zahid M, Rana MA. Mathematical Analysis of Pseudoplastic Polymers during Reverse Roll-Coating. Polymers. 12. PMID 33036126 DOI: 10.3390/polym12102285   
2020 Al-Izzi SC, Sens P, Turner MS, Komura S. Dynamics of passive and active membrane tubes. Soft Matter. PMID 32935733 DOI: 10.1039/d0sm01290d   
2020 Pozar M, Bolle J, Sternemann C, Perera A. On the X-ray Scattering Pre-peak of Linear Mono-ols and the Related Micro-structure from Computer Simulations. The Journal of Physical Chemistry. B. PMID 32856907 DOI: 10.1021/acs.jpcb.0c05932   
2020 Hazra MK, Levy Y. Charge pattern affects the structure and dynamics of polyampholyte condensates. Physical Chemistry Chemical Physics : Pccp. PMID 32822449 DOI: 10.1039/d0cp02764b   
2020 Acevedo YM, Sengar N, Min M, Clancy P. A Transferable Molecular Model of Woven Covalent Organic Framework Materials. Acs Applied Materials & Interfaces. PMID 32972130 DOI: 10.1021/acsami.0c13792   
2020 Sadiq M, Khushnood RA, Ilyas M, Khaliq W, Khan SA, Rong P. Comparative assessment of impact analysis methods applied to large commercial aircraft crash on reinforced concrete containment. Plos One. 15: e0237264. PMID 33002034 DOI: 10.1371/journal.pone.0237264   
2020 McCabe KJ, Aboelkassem Y, Teitgen AE, Huber GA, McCammon JA, Regnier M, McCulloch AD. Predicting the effects of dATP on cardiac contraction using multiscale modeling of the sarcomere. Archives of Biochemistry and Biophysics. 108582. PMID 32956632 DOI: 10.1016/j.abb.2020.108582   
2020 Sneha E, Revikumar A, Singh JY, Thampi AD, Rani S. Viscosity prediction of Pongamia pinnata (Karanja) oil by molecular dynamics simulation using GAFF and OPLS force field. Journal of Molecular Graphics & Modelling. 101: 107764. PMID 33032203 DOI: 10.1016/j.jmgm.2020.107764   
2020 Rupakheti C, Lamoureux G, MacKerell AD, Roux B. Statistical mechanics of polarizable force fields based on classical Drude oscillators with dynamical propagation by the dual-thermostat extended Lagrangian. The Journal of Chemical Physics. 153: 114108. PMID 32962358 DOI: 10.1063/5.0019987   
2020 Adkins JF, Naviaux JD, Subhas AV, Dong S, Berelson WM. The Dissolution Rate of CaCO in the Ocean. Annual Review of Marine Science. PMID 32946363 DOI: 10.1146/annurev-marine-041720-092514   
2020 Wu X, Brooks BR. Reformulation of the self-guided molecular simulation method. The Journal of Chemical Physics. 153: 094112. PMID 32891108 DOI: 10.1063/5.0019086