Ian G. Woods, Ph.D. - Related publications

2006 Stanford University, Palo Alto, CA 
Genetics, Neuroscience Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Yamamoto T. Genomic Aberrations Associated with the Pathophysiological Mechanisms of Neurodevelopmental Disorders. Cells. 10. PMID 34571966 DOI: 10.3390/cells10092317   
2021 Li X, Cai K, Pei X, Li Y, Hu Y, Meng F, Song X, Tigabu M, Ding C, Zhao X. Genome-Wide Identification of NAC Transcription Factor Family in and Their Expression Analysis during the Fruit Development and Ripening. International Journal of Molecular Sciences. 22. PMID 34830294 DOI: 10.3390/ijms222212414   
2021 Lyu M, Liu H, Waititu JK, Sun Y, Wang H, Fu J, Chen Y, Liu J, Ku L, Cheng X. TEAseq-based identification of 35,696 Dissociation insertional mutations facilitates functional genomic studies in maize. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34654681 DOI: 10.1016/j.jgg.2021.07.010   
2021 Peterson KA, Murray SA. Progress towards completing the mutant mouse null resource. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 34698892 DOI: 10.1007/s00335-021-09905-0   
2021 Young Chae G, Hong WJ, Jeong Jang M, Jung KH, Kim S. Recurrent mutations promote widespread structural and functional divergence of MULE-derived genes in plants. Nucleic Acids Research. PMID 34725701 DOI: 10.1093/nar/gkab932   
2021 Acs-Szabo L, Papp LA, Sipiczki M, Miklos I. Genome Comparisons of the Fission Yeasts Reveal Ancient Collinear Loci Maintained by Natural Selection. Journal of Fungi (Basel, Switzerland). 7. PMID 34682285 DOI: 10.3390/jof7100864   
2021 Zhou P, Wang L, Liu H, Li C, Li Z, Wang J, Tan X. CyanoOmicsDB: an integrated omics database for functional genomic analysis of cyanobacteria. Nucleic Acids Research. PMID 34614159 DOI: 10.1093/nar/gkab891   
2021 Kim P, Tan H, Liu J, Yang M, Zhou X. FusionAI: Predicting fusion breakpoint from DNA sequence with deep learning. Iscience. 24: 103164. PMID 34646994 DOI: 10.1016/j.isci.2021.103164   
2021 Zhang S, Wang R, Huang C, Zhang L, Sun L. Modulation of Global Gene Expression by Aneuploidy and CNV of Dosage Sensitive Regulatory Genes. Genes. 12. PMID 34681000 DOI: 10.3390/genes12101606   
2021 Wright BW, Molloy MP, Jaschke PR. Overlapping genes in natural and engineered genomes. Nature Reviews. Genetics. PMID 34611352 DOI: 10.1038/s41576-021-00417-w   
2021 Chiurazzi MJ, Nørrevang AF, García P, Cerdán PD, Palmgren MB, Wenkel S. Controlling flowering of Medicago sativa (alfalfa) by inducing dominant mutations. Journal of Integrative Plant Biology. PMID 34761872 DOI: 10.1111/jipb.13186   
2021 Lu L, Hou Q, Wang L, Zhang T, Zhao W, Yan T, Zhao L, Li J, Wan X. Genome-Wide Identification and Characterization of Polygalacturonase Gene Family in Maize ( L.). International Journal of Molecular Sciences. 22. PMID 34639068 DOI: 10.3390/ijms221910722   
2021 Yocca AE, Edger PP. Current status and future perspectives on the evolution of cis-regulatory elements in plants. Current Opinion in Plant Biology. 65: 102139. PMID 34837823 DOI: 10.1016/j.pbi.2021.102139   
2021 Thaxton C, Good ME, DiStefano MT, Luo X, Andersen EF, Thorland E, Berg J, Martin CL, Rehm HL, Riggs ER, . Utilizing ClinGen Gene-Disease Validity and Dosage Sensitivity Curations to Inform Variant Classification. Human Mutation. PMID 34694049 DOI: 10.1002/humu.24291   
2021 Cosentino RO, Brink BG, Siegel TN. Allele-specific assembly of a eukaryotic genome corrects apparent frameshifts and reveals a lack of nonsense-mediated mRNA decay. Nar Genomics and Bioinformatics. 3: lqab082. PMID 34541528 DOI: 10.1093/nargab/lqab082   
2021 Manzoor MA, Sabir IA, Shah IH, Wang H, Yu Z, Rasool F, Mazhar MZ, Younas S, Abdullah M, Cai Y. Comprehensive Comparative Analysis of the GATA Transcription Factors in Four Rosaceae Species and Phytohormonal Response in Chinese Pear () Fruit. International Journal of Molecular Sciences. 22. PMID 34830372 DOI: 10.3390/ijms222212492   
2021 Ren Z, Wang Z, Gu D, Ma H, Zhu Y, Cai M, Zhang J. Genome Instability and Long Noncoding RNA Reveal Biomarkers for Immunotherapy and Prognosis and Novel Competing Endogenous RNA Mechanism in Colon Adenocarcinoma. Frontiers in Cell and Developmental Biology. 9: 740455. PMID 34746134 DOI: 10.3389/fcell.2021.740455   
2021 Awan F, Ali MM, Hamid M, Awan MH, Mushtaq MH, Kalsoom S, Ijaz M, Mehmood K, Liu Y. Epi-Gene: An R-Package for Easy Pan-Genome Analysis. Biomed Research International. 2021: 5585586. PMID 34595238 DOI: 10.1155/2021/5585586   
2021 Yu X, Zhong S, Yang H, Chen C, Chen W, Yang H, Guan J, Fu P, Tan F, Ren T, Shen J, Zhang M, Luo P. Identification and Characterization of Resistance Genes in . Frontiers in Plant Science. 12: 758559. PMID 34777439 DOI: 10.3389/fpls.2021.758559   
2021 Jiang N, Hu S, Peng B, Li Z, Yuan X, Xiao S, Fu Y. Genome of Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for . Frontiers in Microbiology. 12: 724451. PMID 34603250 DOI: 10.3389/fmicb.2021.724451   
2021 Jiang T, Yin Z, Cai R, Yu H, Lu Q, Zhao S, Tian Y, Yan Y, Chen X, Guo J. Chromosomal-level Genome Assembly of a True Bug, Aspongopus chinensis Dallas, 1851 (Hemiptera: Dinidoridae). Genome Biology and Evolution. PMID 34623414 DOI: 10.1093/gbe/evab232   
2021 Zhou J, Wu P, Xiong Z, Liu N, Zhao N, Ji M, Qiu Y, Yang B. Chromosome-Level Genome Assembly Reveals Significant Gene Expansion in the Toll and IMD Signaling Pathways of . Frontiers in Genetics. 12: 728418. PMID 34777464 DOI: 10.3389/fgene.2021.728418   
2021 Yang Y, Mao Y, Liu Y, Wang R, Lu H, Li H, Luo J, Wang M, Liao X, Ma H. GEDpm-cg: Genome Editing Automated Design Platform for Point Mutation Construction in . Frontiers in Bioengineering and Biotechnology. 9: 768289. PMID 34722482 DOI: 10.3389/fbioe.2021.768289   
2021 Feng C, Zou S, Gao P, Wang Z. identification, characterization expression profile of WUSCHEL-Related Homeobox (WOX) gene family in two species of kiwifruit. Peerj. 9: e12348. PMID 34760371 DOI: 10.7717/peerj.12348   
2021 Fuchs S, Garrood WT, Beber A, Hammond A, Galizi R, Gribble M, Morselli G, Hui TJ, Willis K, Kranjc N, Burt A, Crisanti A, Nolan T. Resistance to a CRISPR-based gene drive at an evolutionarily conserved site is revealed by mimicking genotype fixation. Plos Genetics. 17: e1009740. PMID 34610011 DOI: 10.1371/journal.pgen.1009740   
2021 Morgenthaler AB, Fritts RK, Copley SD. Amplicon remodeling and genomic mutations drive population dynamics after segmental amplification. Molecular Biology and Evolution. PMID 34581806 DOI: 10.1093/molbev/msab289   
2021 Zhang X, Gu S, Zheng X, Peng S, Li Y, Lin Y, Liang S. A Novel and Efficient Genome Editing Tool Assisted by CRISPR-Cas12a/Cpf1 for . Acs Synthetic Biology. PMID 34644057 DOI: 10.1021/acssynbio.1c00172   
2021 Uddin MB, Sajib EH, Hoque SF, Bappy MNI, Elahi F, Ghosh A, Muhit S, Hassan MM, Hasan M, Chelliah R, Park SJ, Mony TJ, Oh DH, Ahmed SSU. Genomic diversity and molecular dynamics interaction on mutational variances among RB domains of SARS-CoV-2 interplay drug inactivation. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 105128. PMID 34752930 DOI: 10.1016/j.meegid.2021.105128   
2021 Wan JN, Li Y, Guo T, Ji GY, Luo SZ, Ji KP, Cao Y, Tan Q, Bao DP, Yang RH. Whole-Genome and Transcriptome Sequencing of Reveals Its Associated Ectomycorrhizal Niche and Conserved Pathways Involved in Fruiting Body Development. Frontiers in Microbiology. 12: 732458. PMID 34659161 DOI: 10.3389/fmicb.2021.732458   
2021 Singh A, Schermann G, Reislöhner S, Kellner N, Hurt E, Brunner M. Global Transcriptome Characterization and Assembly of the Thermophilic Ascomycete . Genes. 12. PMID 34680944 DOI: 10.3390/genes12101549   
2021 Hakimi H, Asada M, Kawazu SI. Recent Advances in Molecular Genetic Tools for . Veterinary Sciences. 8. PMID 34679052 DOI: 10.3390/vetsci8100222   
2021 Kuchinski KS, Nguyen J, Lee TD, Hickman R, Jassem AN, Hoang LMN, Prystajecky NA, Tyson JR. Mutations in emerging variant of concern lineages disrupt genomic sequencing of SARS-CoV-2 clinical specimens. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. PMID 34757201 DOI: 10.1016/j.ijid.2021.10.050   
2021 Zhou Q, Jiao L, Li W, Hu Z, Li Y, Zhang H, Yang M, Xu L, Yan Y. A Novel Cre/-Based Genetic Tool for Repeated, Targeted and Markerless Gene Integration in . International Journal of Molecular Sciences. 22. PMID 34639080 DOI: 10.3390/ijms221910739   
2021 Federico C, Bruno F, Ragusa D, Clements CS, Brancato D, Henry MP, Bridger JM, Tosi S, Saccone S. Chromosomal Rearrangements and Altered Nuclear Organization: Recent Mechanistic Models in Cancer. Cancers. 13. PMID 34831011 DOI: 10.3390/cancers13225860   
2021 Watson AK, Lopez P, Bapteste E. Hundreds of out-of-frame remodelled gene families in the E. coli pangenome. Molecular Biology and Evolution. PMID 34792602 DOI: 10.1093/molbev/msab329   
2021 Liu K, Gao Y, Li ZH, Liu M, Wang FQ, Wei DZ. CRISPR-Cas12a assisted precise genome editing of Mycolicibacterium neoaurum. New Biotechnology. PMID 34653700 DOI: 10.1016/j.nbt.2021.10.003   
2021 Xu L, Yin L, Qi Y, Tan X, Gao M, Peng J. 3D disorganization and rearrangement of genome provide insights into pathogenesis of NAFLD by integrated Hi-C, Nanopore, and RNA sequencing. Acta Pharmaceutica Sinica. B. 11: 3150-3164. PMID 34729306 DOI: 10.1016/j.apsb.2021.03.022   
2021 Liang L, Li Z, Li Q, Wang X, Su S, Nie H. Expansion of CRISPR Targeting Sites Using an Integrated Gene-Editing System in . Insects. 12. PMID 34680723 DOI: 10.3390/insects12100954   
2021 Chen Z, Sun J, Guan Y, Li M, Lou C, Wu B. Engineered DNase-inactive Cpf1 variants to improve targeting scope for base editing in . Synthetic and Systems Biotechnology. 6: 326-334. PMID 34632125 DOI: 10.1016/j.synbio.2021.09.002   
2021 Wen L, Britton CJ, Garje R, Darbro BW, Packiam VT. The emerging role of somatic tumor sequencing in the treatment of urothelial cancer. Asian Journal of Urology. 8: 391-399. PMID 34765446 DOI: 10.1016/j.ajur.2021.06.005   
2021 Zekri AN, Bahnasy AA, Hafez MM, Hassan ZK, Ahmed OS, Soliman HK, El-Sisi ER, Dine MHSE, Solimane MS, Latife LSA, Seadawy MG, Elsafty AS, Abouelhoda M. Characterization of the SARS-CoV-2 genomes in Egypt in first and second waves of infection. Scientific Reports. 11: 21632. PMID 34732835 DOI: 10.1038/s41598-021-99014-4   
2021 Wang P, Yi Y, Lü X. CRISPR/Cas9-Based Genome Editing Platform for to Reveal the Molecular Mechanism of Its Probiotic Properties. Journal of Agricultural and Food Chemistry. PMID 34747603 DOI: 10.1021/acs.jafc.1c05389   
2021 Zhuang X, Cheng CC. Propagation of a De Novo Gene under Natural Selection: Antifreeze Glycoprotein Genes and Their Evolutionary History in Codfishes. Genes. 12. PMID 34828383 DOI: 10.3390/genes12111777   
2021 Han S, Jiao Z, Niu MX, Yu X, Huang M, Liu C, Wang HL, Zhou Y, Mao W, Wang X, Yin W, Xia X. Genome-Wide Comprehensive Analysis of the Gene Family in . International Journal of Molecular Sciences. 22. PMID 34830215 DOI: 10.3390/ijms222212336   
2021 Iqbal Qureshi AM, Sofi MU, Dar NA, Khan MH, Mahdi SS, Dar ZA, Bangroo S, El-Serehy HA, Hefft DI, Popescu SM. Insilco identification and characterization of superoxide dismutase gene family in . Saudi Journal of Biological Sciences. 28: 5526-5537. PMID 34588862 DOI: 10.1016/j.sjbs.2021.08.009   
2021 Chen C, Wang T, Yang M, Song J, Huang M, Bai Y, Su H. Genomic Profiling of Blood-Derived Circulating Tumor DNA from Patients with Advanced Biliary Tract Cancer. Pathology Oncology Research : Por. 27: 1609879. PMID 34720757 DOI: 10.3389/pore.2021.1609879   
2021 Nie G, Yang Z, He J, Liu A, Chen J, Wang S, Wang X, Feng G, Li D, Peng Y, Huang L, Zhang X. Genome-Wide Investigation of the NAC Transcription Factor Family in and Expression Analysis Under Various Abiotic Stress. Frontiers in Plant Science. 12: 766550. PMID 34804100 DOI: 10.3389/fpls.2021.766550   
2021 Noel EA, Weeks DP, Van Etten JL. Pursuit of chlorovirus genetic transformation and CRISPR/Cas9-mediated gene editing. Plos One. 16: e0252696. PMID 34673785 DOI: 10.1371/journal.pone.0252696   
2021 Huang YS, Lin CY, Cheng WC. Investigating the Transcriptomic and Expression Presence-Absence Variation Exist in Japanese Eel (Anguilla japonica), a Primitive Teleost. Marine Biotechnology (New York, N.Y.). PMID 34714446 DOI: 10.1007/s10126-021-10077-w   
2021 Pyasi S, Gupta A, Hegde NR, Nayak D. Complete genome sequencing and assessment of mutation-associated protein dynamics of the first Indian bovine ephemeral fever virus (BEFV) isolate. The Veterinary Quarterly. 1-16. PMID 34663182 DOI: 10.1080/01652176.2021.1995909