Nirmalya Chatterjee - Related publications

Harvard Medical School, Boston, MA, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Liu H, Yang Y, Zhang L. Zinc Finger-Homeodomain Transcriptional Factors (ZF-HDs) in Wheat ( L.): Identification, Evolution, Expression Analysis and Response to Abiotic Stresses. Plants (Basel, Switzerland). 10. PMID 33809871 DOI: 10.3390/plants10030593   
2021 Kim D, Hong SH, Han G, Cho C. Analysis of mouse male germ cell-specific or -predominant Tex13 family genes encoding proteins with transcriptional repressor activity. Molecular Biology Reports. PMID 33811575 DOI: 10.1007/s11033-021-06265-5   
2021 Kwik M, Hainzl S, Oppelt J, Tichy B, Koller U, Bernardinelli E, Steiner M, Zara G, Nofziger C, Weis S, Paulmichl M, Dossena S, Patsch W, Soyal SM. Selective Activation of CNS and Reference Promoters Is Associated with Distinct Gene Programs Relevant for Neurodegenerative Diseases. International Journal of Molecular Sciences. 22. PMID 33804860 DOI: 10.3390/ijms22073296   
2021 Chen J, Li N, Wang X, Meng X, Cui X, Chen Z, Ren H, Ma J, Liu H. Late embryogenesis abundant (LEA) gene family in : identification, expression analysis, and response to drought stress. Plant Signaling & Behavior. 1891769. PMID 33818288 DOI: 10.1080/15592324.2021.1891769   
2021 Nasreen M, Fletcher A, Hosmer J, Zhong Q, Essilfie AT, McEwan AG, Kappler U. The Alternative Sigma Factor RpoE2 Is Involved in the Stress Response to Hypochlorite and Survival of . Frontiers in Microbiology. 12: 637213. PMID 33643271 DOI: 10.3389/fmicb.2021.637213   
2021 Greco FV, Pandi A, Erb TJ, Grierson CS, Gorochowski TE. Harnessing the central dogma for stringent multi-level control of gene expression. Nature Communications. 12: 1738. PMID 33741937 DOI: 10.1038/s41467-021-21995-7   
2021 Li Y, Song J, Zhu G, Hou Z, Wang L, Wu X, Fang Z, Liu Y, Gao C. Genome-wide identification and expression analysis of ADP-ribosylation factors associated with biotic and abiotic stress in wheat ( L.). Peerj. 9: e10963. PMID 33717696 DOI: 10.7717/peerj.10963   
2021 Yang D, Jiang C, Ning B, Kong W, Shi Y. The PorX/PorY system is a virulence factor of Porphyromonas gingivalis and mediates the activation of the Type IX secretion system. The Journal of Biological Chemistry. 100574. PMID 33757767 DOI: 10.1016/j.jbc.2021.100574   
2021 Tian Y, Smith-Bolton RK. Regulation of growth and cell fate during tissue regeneration by the two SWI/SNF chromatin-remodeling complexes of Drosophila. Genetics. 217: 1-16. PMID 33683366 DOI: 10.1093/genetics/iyaa028   
2021 Wu B, Jiang X, Huang Y, Ying X, Zhang H, Liu B, Li Z, Qi D, Ji W, Cai X. Integrated Analysis of mRNA-mA-protein Profiles Reveals Novel Insights into the Mechanisms for Cadmium-induced Urothelial Transformation. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 1-23. PMID 33830842 DOI: 10.1080/1354750X.2021.1913513   
2021 Ding M, Wang L, Zhan W, Sun G, Jia X, Chen S, Ding W, Yang J. Genome-wide identification and expression analysis of late embryogenesis abundant protein-encoding genes in rye (Secale cereale L.). Plos One. 16: e0249757. PMID 33831102 DOI: 10.1371/journal.pone.0249757   
2021 Kitajima K, Kawahira N, Lee S, Tamura K, Morishita Y, Ohtsuka D. Light-induced local gene expression in primary chick cell culture system. Development, Growth & Differentiation. PMID 33733477 DOI: 10.1111/dgd.12721   
2021 Mo F, Zhang N, Qiu Y, Meng L, Cheng M, Liu J, Yao L, Lv R, Liu Y, Zhang Y, Chen X, Wang A. Molecular Characterization, Gene Evolution and Expression Analysis of the F-Box Gene Family in Tomato (). Genes. 12. PMID 33799396 DOI: 10.3390/genes12030417   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235   
2021 Mark KG, Rape M. Ubiquitin-dependent regulation of transcription in development and disease. Embo Reports. e51078. PMID 33779035 DOI: 10.15252/embr.202051078   
2021 Qu R, Cao Y, Tang X, Sun L, Wei L, Wang K. Identification and expression analysis of the WRKY gene family in Isatis indigotica. Gene. 145561. PMID 33705810 DOI: 10.1016/j.gene.2021.145561   
2021 Tresenrider A, Morse K, Jorgensen V, Chia M, Liao H, Jacobus van Werven F, Ünal E. Integrated genomic analysis reveals key features of long undecoded transcript isoform-based gene repression. Molecular Cell. PMID 33826921 DOI: 10.1016/j.molcel.2021.03.013   
2021 Reed F, Larsuel ST, Mayday MY, Scanlon V, Krause DS. MRTFA: a critical protein in normal and malignant hematopoiesis and beyond. The Journal of Biological Chemistry. 100543. PMID 33722605 DOI: 10.1016/j.jbc.2021.100543   
2021 Soni P, Shivhare R, Kaur A, Bansal S, Sonah H, Deshmukh R, Giri J, Lata C, Ram H. Reference gene identification for gene expression analysis in rice under different metal stress. Journal of Biotechnology. PMID 33794279 DOI: 10.1016/j.jbiotec.2021.03.019   
2021 Chen D, Roychowdhury-Sinha A, Prakash P, Lan X, Fan W, Goto A, Hoffmann JA. A time course transcriptomic analysis of host and injected oncogenic cells reveals new aspects of immune defenses. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33737397 DOI: 10.1073/pnas.2100825118   
2021 Zhang X, Lv S, Luo Z, Hu Y, Peng X, Lv J, Zhao S, Feng J, Huang G, Wan QL, Liu J, Huang H, Luan B, Wang D, Zhao X, et al. MiniCAFE, a CRISPR/Cas9-based compact and potent transcriptional activator, elicits gene expression in vivo. Nucleic Acids Research. PMID 33751124 DOI: 10.1093/nar/gkab174   
2021 He K, Zhang J, Liu J, Cui Y, Liu LG, Ye S, Ban Q, Pan R, Liu D. Functional genomics study of protein inhibitor of activated STAT1 in mouse hippocampal neuronal cells revealed by RNA sequencing. Aging. 13. PMID 33759814 DOI: 10.18632/aging.202749   
2021 Larson ED, Marsh AJ, Harrison MM. Pioneering the developmental frontier. Molecular Cell. PMID 33689750 DOI: 10.1016/j.molcel.2021.02.020   
2021 Haellman V, Saxena P, Jiang Y, Fussenegger M. Rational design and optimization of synthetic gene switches for controlling cell-fate decisions in pluripotent stem cells. Metabolic Engineering. 65: 99-110. PMID 33744461 DOI: 10.1016/j.ymben.2021.03.009   
2021 Quiquand M, Rimesso G, Qiao N, Suo S, Zhao C, Slattery M, White KP, Han JJ, Baker NE. New regulators of Drosophila eye development identified from temporal transcriptome changes. Genetics. PMID 33681970 DOI: 10.1093/genetics/iyab007   
2021 Dangoumau A, Marouillat S, Coelho R, Wurmser F, Brulard C, Haouari S, Laumonnier F, Corcia P, Andres CR, Blasco H, Vourc'h P. Dysregulations of Expression of Genes of the Ubiquitin/SUMO Pathways in an In Vitro Model of Amyotrophic Lateral Sclerosis Combining Oxidative Stress and SOD1 Gene Mutation. International Journal of Molecular Sciences. 22. PMID 33670299 DOI: 10.3390/ijms22041796   
2021 Sharma R, Mahanty B, Mishra R, Joshi RK. Genome wide identification and expression analysis of pepper CH zinc finger transcription factors in response to anthracnose pathogen . 3 Biotech. 11: 118. PMID 33747699 DOI: 10.1007/s13205-020-02601-x   
2021 Goszczynski DE, Halstead MM, Islas-Trejo AD, Zhou H, Ross PJ. Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage. Genome Research. 31: 732-744. PMID 33722934 DOI: 10.1101/gr.267336.120   
2021 Naithani S, Dikeman D, Garg P, Al-Bader N, Jaiswal P. Beyond gene ontology (GO): using biocuration approach to improve the gene nomenclature and functional annotation of rice S-domain kinase subfamily. Peerj. 9: e11052. PMID 33777532 DOI: 10.7717/peerj.11052   
2021 Noh H, Hua Z, Chrysinas P, Shoemaker JE, Gunawan R. DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks. Bmc Bioinformatics. 22: 108. PMID 33663384 DOI: 10.1186/s12859-021-04046-2   
2021 Xie J, Deng Z, Alahdal M, Liu J, Zhao Z, Chen X, Wang G, Hu X, Duan L, Wang D, Li W. Screening and verification of hub genes involved in osteoarthritis using bioinformatics. Experimental and Therapeutic Medicine. 21: 330. PMID 33732303 DOI: 10.3892/etm.2021.9761   
2021 Singh D, Yi SV. Enhancer pleiotropy, gene expression, and the architecture of human enhancer-gene interactions. Molecular Biology and Evolution. PMID 33749795 DOI: 10.1093/molbev/msab085   
2021 Bai J, Dai Y, Farinha A, Tang AY, Syal S, Vargas-Cuebas G, van Opijnen T, Isberg RR, Geisinger E. Essential gene analysis in by high-density transposon mutagenesis and CRISPR interference. Journal of Bacteriology. PMID 33782056 DOI: 10.1128/JB.00565-20   
2021 Tang D, Zhang Z, Zboril E, Wetzel MD, Xu X, Zhang W, Chen L, Liu Z. Pontin Functions as A Transcriptional Co-activator for Retinoic Acid-induced HOX Gene Expression. Journal of Molecular Biology. 166928. PMID 33713676 DOI: 10.1016/j.jmb.2021.166928   
2021 Yang L, Wang Z, Hua J. A Meta-Analysis Reveals Opposite Effects of Biotic and Abiotic Stresses on Transcript Levels of Arabidopsis Intracellular Immune Receptor Genes. Frontiers in Plant Science. 12: 625729. PMID 33747005 DOI: 10.3389/fpls.2021.625729   
2021 Crespo NE, Torres-Bracero A, Renta JY, Desnick RJ, Cadilla CL. Expression Profiling Identifies TWIST2 Target Genes in Setleis Syndrome Patient Fibroblast and Lymphoblast Cells. International Journal of Environmental Research and Public Health. 18. PMID 33669496 DOI: 10.3390/ijerph18041997   
2021 Li S, Cao P, Wang C, Guo J, Zang Y, Wu K, Ran F, Liu L, Wang D, Min Y. Genome-Wide Analysis of Tubulin Gene Family in Cassava and Expression of Family Member during Various Stress. Plants (Basel, Switzerland). 10. PMID 33807152 DOI: 10.3390/plants10040668   
2021 Shehzad M, Zhou Z, Ditta A, Khan M, Cai X, Xu Y, Maqbool A, Khalofah A, Shaban M, Naeem M, Ansari MJ, Wang K, Liu F. Identification and characterization of genes related to salt stress tolerance within segregation distortion regions of genetic map in F2 population of upland cotton. Plos One. 16: e0247593. PMID 33770112 DOI: 10.1371/journal.pone.0247593   
2021 Joshi GAN, Chauhan C, Das S. Sequence and functional analysis of MIR319 promoter homologs from Brassica juncea reveals regulatory diversification and altered expression under stress. Molecular Genetics and Genomics : Mgg. PMID 33797588 DOI: 10.1007/s00438-021-01778-x   
2021 Dong S, Zhang L, Pang W, Zhang Y, Wang C, Li Z, Ma L, Tang W, Yang G, Song H. Comprehensive analysis of coding sequence architecture features and gene expression in . Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 27: 213-222. PMID 33707864 DOI: 10.1007/s12298-021-00938-y   
2021 Bisht A, Bhalla S, Kumar A, Kaur J, Garg N. Gene expression analysis for selection and validation of suitable housekeeping gene(s) in cadmium exposed pigeonpea plants inoculated with arbuscular mycorrhizae. Plant Physiology and Biochemistry : Ppb. 162: 592-602. PMID 33773234 DOI: 10.1016/j.plaphy.2021.03.024   
2021 Bhatia S, Kumar H, Mahajan M, Yadav S, Saini P, Yadav S, Sahu SK, Sundaram JK, Yadav RK. A cellular expression map of epidermal and subepidermal cell layer-enriched transcription factor genes integrated with the regulatory network in Arabidopsis shoot apical meristem. Plant Direct. 5: e00306. PMID 33748654 DOI: 10.1002/pld3.306   
2021 Nan H, Ludlow RA, Lu M, An H. Genome-Wide Analysis of Genes and Their Response to Abiotic Stress in Rose (). Frontiers in Genetics. 12: 538733. PMID 33747030 DOI: 10.3389/fgene.2021.538733   
2021 Ye ZF, Zhang P, Gai TT, Lou JH, Dai FY, Tong XL. Sob gene is critical to wing development in Bombyx mori and Tribolium castaneum. Insect Science. PMID 33822467 DOI: 10.1111/1744-7917.12911   
2021 Kumar J, Sen Gupta D, Kesari R, Verma R, Murugesan S, Basu PS, Soren KR, Gupta S, Singh NP. Comprehensive RNAseq analysis for identification of genes expressed under heat stress in lentil. Physiologia Plantarum. PMID 33829491 DOI: 10.1111/ppl.13419   
2021 Glasscock CJ, Biggs BW, Lazar JT, Arnold JH, Burdette LA, Valdes A, Kang MK, Tullman-Ercek D, Tyo KEJ, Lucks JB. Dynamic Control of Gene Expression with Riboregulated Switchable Feedback Promoters. Acs Synthetic Biology. PMID 33834762 DOI: 10.1021/acssynbio.1c00015   
2021 Meng F, Zhao H, Zhu B, Zhang T, Yang M, Li Y, Han Y, Jiang J. Genomic Editing of Intronic Enhancers Unveils Their Role in Fine-Tuning Tissue-Specific Gene Expression in Arabidopsis thaliana. The Plant Cell. PMID 33764459 DOI: 10.1093/plcell/koab093   
2021 Xiong D, Yu L, Shan H, Tian C. CcPmk1 is a regulator of pathogenicity in Cytospora chrysosperma and can be used as a potential target for disease control. Molecular Plant Pathology. PMID 33835616 DOI: 10.1111/mpp.13059   
2021 Galbraith MD, Andrysik Z, Sullivan KD, Espinosa JM. Global Analyses to Identify Direct Transcriptional Targets of p53. Methods in Molecular Biology (Clifton, N.J.). 2267: 19-56. PMID 33786783 DOI: 10.1007/978-1-0716-1217-0_3