Matthias Selbach - Related publications

Proteome Dynamics Max Delbruck Center for Molecular Medicine, Berlin, Berlin, Berlin, Germany 
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44 most relevant papers in past 60 days:
Year Citation  Score
2021 Sinha A, Baumgarten S, Distiller A, McHugh E, Chen P, Singh M, Bryant JM, Liang J, Cecere G, Dedon PC, Preiser PR, Ralph SA, Scherf A. Functional Characterization of the mA-Dependent Translational Modulator PfYTH.2 in the Human Malaria Parasite. Mbio. 12. PMID 33906926 DOI: 10.1128/mBio.00661-21   
2021 Finke M, Brecht D, Stifel J, Gense K, Gamerdinger M, Hartig JS. Efficient splicing-based RNA regulators for tetracycline-inducible gene expression in human cell culture and C. elegans. Nucleic Acids Research. PMID 33893804 DOI: 10.1093/nar/gkab233   
2021 Liang Y, Ma KS, Liang PZ, Yang LW, Zhang L, Gao XW. Combined Transcriptomic and Proteomic Analysis of , the Green Peach Aphid, Infected with Cucumber Mosaic Virus. Insects. 12. PMID 33919000 DOI: 10.3390/insects12050372   
2021 Reynaud K, Brothers M, Ly M, Ingolia NT. Dynamic post-transcriptional regulation by Mrn1 links cell wall homeostasis to mitochondrial structure and function. Plos Genetics. 17: e1009521. PMID 33857138 DOI: 10.1371/journal.pgen.1009521   
2021 Liu L, Tang Z, Liu F, Mao F, Yujuan G, Wang Z, Zhao X. Normal, novel or none: versatile regulation from alternative splicing. Plant Signaling & Behavior. 1917170. PMID 33882794 DOI: 10.1080/15592324.2021.1917170   
2021 Wang M, Ma T, Wang H, Liu J, Chen Y, Shim WB, Ma Z. The RNA binding protein FgRbp1 regulates specific pre-mRNA splicing via interacting with U2AF23 in Fusarium. Nature Communications. 12: 2661. PMID 33976182 DOI: 10.1038/s41467-021-22917-3   
2021 Wang R, Hu X, Liu X, Bai L, Gu J, Li Q. Construction of liver hepatocellular carcinoma-specific lncRNA-miRNA-mRNA network based on bioinformatics analysis. Plos One. 16: e0249881. PMID 33861762 DOI: 10.1371/journal.pone.0249881   
2021 Cui Y, Lyu X, Ding L, Ke L, Yang D, Pirouz M, Qi Y, Ong J, Gao G, Du P, Gregory RI. Global miRNA dosage control of embryonic germ layer specification. Nature. PMID 33953397 DOI: 10.1038/s41586-021-03524-0   
2021 Kozar I, Philippidou D, Margue C, Gay LA, Renne R, Kreis S. Cross-Linking Ligation and Sequencing of Hybrids (qCLASH) Reveals an Unpredicted miRNA Targetome in Melanoma Cells. Cancers. 13. PMID 33806450 DOI: 10.3390/cancers13051096   
2021 Abu-Halima M, Wagner V, Becker LS, Ayesh BM, Abd El-Rahman M, Fischer U, Meese E, Abdul-Khaliq H. Integrated microRNA and mRNA Expression Profiling Identifies Novel Targets and Networks Associated with Ebstein's Anomaly. Cells. 10. PMID 33946378 DOI: 10.3390/cells10051066   
2021 Lan Y, Liu B, Guo H. The role of MA modification in the regulation of tumor-related lncRNAs. Molecular Therapy. Nucleic Acids. 24: 768-779. PMID 33996258 DOI: 10.1016/j.omtn.2021.04.002   
2021 Kozlov E, Shidlovskii YV, Gilmutdinov R, Schedl P, Zhukova M. The role of CPEB family proteins in the nervous system function in the norm and pathology. Cell & Bioscience. 11: 64. PMID 33789753 DOI: 10.1186/s13578-021-00577-6   
2021 Basei FL, Moura LAR, Kobarg J. Using the E1A Minigene Tool to Study mRNA Splicing Changes. Journal of Visualized Experiments : Jove. PMID 33970143 DOI: 10.3791/62181   
2021 Yoshimoto R, Chhipi-Shrestha JK, Schneider-Poetsch T, Furuno M, Burroughs AM, Noma S, Suzuki H, Hayashizaki Y, Mayeda A, Nakagawa S, Kaida D, Iwasaki S, Yoshida M. Spliceostatin A interaction with SF3B limits U1 snRNP availability and causes premature cleavage and polyadenylation. Cell Chemical Biology. PMID 33784500 DOI: 10.1016/j.chembiol.2021.03.002   
2021 Velázquez-Cruz A, Baños-Jaime B, Díaz-Quintana A, De la Rosa MA, Díaz-Moreno I. Post-translational Control of RNA-Binding Proteins and Disease-Related Dysregulation. Frontiers in Molecular Biosciences. 8: 658852. PMID 33987205 DOI: 10.3389/fmolb.2021.658852   
2021 Huang GW, Chen QQ, Ma CC, Xie LH, Gu J. linc01305 promotes metastasis and proliferation of esophageal squamous cell carcinoma through interacting with IGF2BP2 and IGF2BP3 to stabilize HTR3A mRNA. The International Journal of Biochemistry & Cell Biology. 106015. PMID 34022433 DOI: 10.1016/j.biocel.2021.106015   
2021 Xue X, Jiao F, Xu H, Jiao Q, Zhang X, Zhang Y, Du S, Xi M, Wang A, Chen J, Wang M. The role of RNA-binding protein, microRNA and alternative splicing in seed germination: a field need to be discovered. Bmc Plant Biology. 21: 194. PMID 33882821 DOI: 10.1186/s12870-021-02966-y   
2021 Yamazaki-Takai M, Takai H, Iwai Y, Noda K, Mezawa M, Tsuruya Y, Yamaguchi A, Nakayama Y, Ogata Y. MiR-200b suppresses TNF-α-induced AMTN production in human gingival epithelial cells. Odontology. 109: 403-410. PMID 32980912 DOI: 10.1007/s10266-020-00555-3   
2021 Billa PA, Faulconnier Y, Ye T, Bourdon C, Pires JAA, Leroux C. Nutrigenomic analyses reveal miRNAs and mRNAs affected by feed restriction in the mammary gland of midlactation dairy cows. Plos One. 16: e0248680. PMID 33857151 DOI: 10.1371/journal.pone.0248680   
2021 Bedi K, Magnuson BR, Narayanan I, Paulsen M, Wilson TE, Ljungman M. Co-transcriptional splicing efficiencies differ within genes and between cell types. Rna (New York, N.Y.). PMID 33975916 DOI: 10.1261/rna.078662.120   
2021 Uppala JK, Bhattacharjee S, Dey M. Vps34 and TOR Kinases Coordinate mRNA Translation in the presence or absence of Ire1-dependent Splicing. Molecular and Cellular Biology. PMID 33972394 DOI: 10.1128/MCB.00662-20   
2021 Daniels NJ, Hershberger CE, Gu X, Schueger C, DiPasquale WM, Brick J, Saunthararajah Y, Maciejewski JP, Padgett RA. Functional analyses of human LUC7-like proteins involved in splicing regulation and myeloid neoplasms. Cell Reports. 35: 108989. PMID 33852859 DOI: 10.1016/j.celrep.2021.108989   
2021 Makino S, Kawamata T, Iwasaki S, Ohsumi Y. Selectivity of mRNA degradation by autophagy in yeast. Nature Communications. 12: 2316. PMID 33875662 DOI: 10.1038/s41467-021-22574-6   
2021 Liu D, Zuo X, Zhang P, Zhao R, Lai D, Chen K, Han Y, Wan G, Zheng Y, Lu C, Gu X. The Novel Regulatory Role of lncRNA-miRNA-mRNA Axis in Amyotrophic Lateral Sclerosis: An Integrated Bioinformatics Analysis. Computational and Mathematical Methods in Medicine. 2021: 5526179. PMID 33953791 DOI: 10.1155/2021/5526179   
2021 Khan MR, Wellinger RJ, Laurent B. Exploring the Alternative Splicing of Long Noncoding RNAs. Trends in Genetics : Tig. PMID 33892960 DOI: 10.1016/j.tig.2021.03.010   
2021 Shrivastava R, Tupperwar N, Schwartz B, Baron N, Shapira M. LeishIF4E-5 Is a Promastigote-Specific Cap-Binding Protein in . International Journal of Molecular Sciences. 22. PMID 33921489 DOI: 10.3390/ijms22083979   
2021 Li Z, Zhang P, Zhang R, Wang X, Tse YC, Zhang H. A collection of toolkit strains reveals distinct localization and dynamics of membrane-associated transcripts in epithelia. Cell Reports. 35: 109072. PMID 33951426 DOI: 10.1016/j.celrep.2021.109072   
2021 Wang F, Liao Y, Zhang M, Zhu Y, Wang W, Cai H, Liang J, Song F, Hou C, Huang S, Zhang Y, Wang C, Hou J. N6-methyladenosine demethyltransferase FTO-mediated autophagy in malignant development of oral squamous cell carcinoma. Oncogene. PMID 33972683 DOI: 10.1038/s41388-021-01820-7   
2021 Wan Y, Anastasakis DG, Rodriguez J, Palangat M, Gudla P, Zaki G, Tandon M, Pegoraro G, Chow CC, Hafner M, Larson DR. Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and stochastic splice site selection. Cell. PMID 33979654 DOI: 10.1016/j.cell.2021.04.012   
2021 Topchu I, Karnaukhov N, Mazitova A, Yugai V, Voloshin M, Tikhomirova M, Kit O, Frantsiyants E, Kharin L, Airapetova T, Ratner E, Sabirov A, Abramova Z, Serebriiskii I, Boumber Y, et al. Musashi 2 (MSI2) expression as an independent prognostic biomarker in non-small cell lung cancer (NSCLC). Journal of Thoracic Disease. 13: 1370-1379. PMID 33841930 DOI: 10.21037/jtd-20-2787   
2021 Kim GW, Imam H, Siddiqui A. The RNA binding proteins YTHDC1 and FMRP regulate the nuclear export of N6-methyladenosine modified Hepatitis B Virus transcripts and affect the viral life cycle. Journal of Virology. PMID 33883220 DOI: 10.1128/JVI.00097-21   
2021 Tej S, Mukherji S. Small RNA-driven feed-forward loop: fine-tuning of protein synthesis through sRNA-mediated crosstalk. The European Physical Journal. E, Soft Matter. 44: 55. PMID 33871749 DOI: 10.1140/epje/s10189-021-00013-0   
2021 Charles S, Natarajan J. Integrated regulatory network based on lncRNA-miRNA-mRNA-TF reveals key genes and sub-networks associated with dilated cardiomyopathy. Computational Biology and Chemistry. 92: 107500. PMID 33940530 DOI: 10.1016/j.compbiolchem.2021.107500   
2021 Ban Y, Tan Y, Li X, Li X, Zeng Z, Xiong W, Li G, Xiang B, Yi M. RNA-binding protein YBX1 promotes cell proliferation and invasiveness of nasopharyngeal carcinoma cells binding to AURKA mRNA. Journal of Cancer. 12: 3315-3324. PMID 33976741 DOI: 10.7150/jca.56262   
2021 Teng X, Liao J, Zhao L, Dong W, Xue H, Bai L, Xu S. Whole transcriptome analysis of the differential RNA profiles and associated competing endogenous RNA networks in LPS-induced acute lung injury (ALI). Plos One. 16: e0251359. PMID 33961683 DOI: 10.1371/journal.pone.0251359   
2021 Sun TC, Zhang Y, Yu K, Li Y, Yu H, Zhou SJ, Wang YP, Deng SL, Tian L. LncRNAs induce oxidative stress and spermatogenesis by regulating endoplasmic reticulum genes and pathways. Aging. 13. PMID 34001678 DOI: 10.18632/aging.202971   
2021 Dong H, Li L, Zhu X, Shi J, Fu Y, Zhang S, Shi Y, Xu B, Zhang J, Shi F, Jin Y. Complex RNA Secondary Structures Mediate Mutually Exclusive Splicing of Coleoptera . Frontiers in Genetics. 12: 644238. PMID 33859670 DOI: 10.3389/fgene.2021.644238   
2021 Zhang Q, Wang Y, Xie W, Chen C, Ren D, Hu J, Zhu L, Zhang G, Gao Z, Guo L, Zeng D, Shen L, Qian Q. OsMORF9 is necessary for chloroplast development and seedling survival in rice. Plant Science : An International Journal of Experimental Plant Biology. 307: 110907. PMID 33902846 DOI: 10.1016/j.plantsci.2021.110907   
2021 Serra F, Bottini S, Pratella D, Stathopoulou MG, Sebille W, El-Hami L, Repetto E, Mauduit C, Benahmed M, Grandjean V, Trabucchi M. Systemic CLIP-seq analysis and game theory approach to model microRNA mode of binding. Nucleic Acids Research. PMID 33823551 DOI: 10.1093/nar/gkab198   
2021 Lafarga V, Sirozh O, Díaz-López I, Galarreta A, Hisaoka M, Zarzuela E, Boskovic J, Jovanovic B, Fernandez-Leiro R, Muñoz J, Stoecklin G, Ventoso I, Fernandez-Capetillo O. Widespread displacement of DNA- and RNA-binding factors underlies toxicity of arginine-rich cell-penetrating peptides. The Embo Journal. e103311. PMID 33978236 DOI: 10.15252/embj.2019103311   
2021 Li D, McIntosh CS, Mastaglia FL, Wilton SD, Aung-Htut MT. Neurodegenerative diseases: a hotbed for splicing defects and the potential therapies. Translational Neurodegeneration. 10: 16. PMID 34016162 DOI: 10.1186/s40035-021-00240-7   
2021 Ali A, Murani E, Hadlich F, Liu X, Wimmers K, Ponsuksili S. Prenatal Skeletal Muscle Transcriptome Analysis Reveals Novel MicroRNA-mRNA Networks Associated with Intrauterine Growth Restriction in Pigs. Cells. 10. PMID 33923344 DOI: 10.3390/cells10051007   
2021 Shibuta MK, Sakamoto T, Yamaoka T, Yoshikawa M, Kasamatsu S, Yagi N, Fujimoto S, Suzuki T, Uchino S, Sato Y, Kimura H, Matsunaga S. A live imaging system to analyze spatiotemporal dynamics of RNA polymerase II modification in Arabidopsis thaliana. Communications Biology. 4: 580. PMID 33990678 DOI: 10.1038/s42003-021-02106-0   
2021 Li MH, Niu MH, Feng YQ, Zhang SE, Tang SW, Wang JJ, Cao HG, Shen W. Establishment of lncRNA-mRNA network in bovine oocyte between germinal vesicle and metaphase II stage. Gene. 145716. PMID 33984447 DOI: 10.1016/j.gene.2021.145716