| Year |
Citation |
Score |
| 2023 |
Fox J, Cummins B, Moseley RC, Gameiro M, Haase SB. A yeast cell cycle pulse generator model shows consistency with multiple oscillatory and checkpoint mutant datasets. Mathematical Biosciences. 109102. PMID 37939998 DOI: 10.1016/j.mbs.2023.109102 |
0.817 |
|
| 2023 |
Campione SA, Kelliher CM, Orlando DA, Tran TQ, Haase SB. Alignment of Synchronized Time-Series Data Using the Characterizing Loss of Cell Cycle Synchrony Model for Cross-Experiment Comparisons. Journal of Visualized Experiments : Jove. PMID 37358275 DOI: 10.3791/65466 |
0.822 |
|
| 2023 |
Motta FC, McGoff K, Moseley RC, Cho CY, Kelliher CM, Smith LM, Ortiz MS, Leman AR, Campione SA, Devos N, Chaorattanakawee S, Uthaimongkol N, Kuntawunginn W, Thongpiam C, Thamnurak C, ... ... Haase SB, et al. The parasite intraerythrocytic cycle and human circadian cycle are coupled during malaria infection. Proceedings of the National Academy of Sciences of the United States of America. 120: e2216522120. PMID 37279274 DOI: 10.1073/pnas.2216522120 |
0.76 |
|
| 2023 |
Hasnain A, Balakrishnan S, Joshy DM, Smith J, Haase SB, Yeung E. Learning perturbation-inducible cell states from observability analysis of transcriptome dynamics. Nature Communications. 14: 3148. PMID 37253722 DOI: 10.1038/s41467-023-37897-9 |
0.677 |
|
| 2023 |
Cummins B, Vrana J, Moseley RC, Eramian H, Deckard A, Fontanarrosa P, Bryce D, Weston M, Zheng G, Nowak J, Motta FC, Eslami M, Johnson KL, Goldman RP, Myers CJ, ... ... Haase SB, et al. Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop. Synthetic Biology (Oxford, England). 8: ysad005. PMID 37073283 DOI: 10.1093/synbio/ysad005 |
0.776 |
|
| 2022 |
Goldman RP, Moseley R, Roehner N, Cummins B, Vrana JD, Clowers KJ, Bryce D, Beal J, DeHaven M, Nowak J, Higa T, Biggers V, Lee P, Hunt JP, Mosqueda L, ... Haase SB, et al. Highly-automated, high-throughput replication of yeast-based logic circuit design assessments. Synthetic Biology (Oxford, England). 7: ysac018. PMID 36285185 DOI: 10.1093/synbio/ysac018 |
0.772 |
|
| 2022 |
Cummins B, Motta FC, Moseley RC, Deckard A, Campione S, Gameiro M, Gedeon T, Mischaikow K, Haase SB. Experimental guidance for discovering genetic networks through hypothesis reduction on time series. Plos Computational Biology. 18: e1010145. PMID 36215333 DOI: 10.1371/journal.pcbi.1010145 |
0.82 |
|
| 2022 |
Welling CM, Singleton DR, Haase SB, Browning CH, Stoner BR, Gunsch CK, Grego S. Predictive values of time-dense SARS-CoV-2 wastewater analysis in university campus buildings. The Science of the Total Environment. 835: 155401. PMID 35469858 DOI: 10.1016/j.scitotenv.2022.155401 |
0.604 |
|
| 2022 |
Motta FC, Moseley RC, Cummins B, Deckard A, Haase SB. Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes. Bmc Bioinformatics. 23: 94. PMID 35300586 DOI: 10.1186/s12859-022-04627-9 |
0.826 |
|
| 2022 |
Liu AB, Davidi D, Landsberg HE, Francesconi M, Platt JT, Nguyen GT, Yune S, Deckard A, Puglin J, Haase SB, Hamer DH, Springer M. Association of COVID-19 Quarantine Duration and Postquarantine Transmission Risk in 4 University Cohorts. Jama Network Open. 5: e220088. PMID 35212750 DOI: 10.1001/jamanetworkopen.2022.0088 |
0.585 |
|
| 2022 |
Bryce D, Goldman RP, DeHaven M, Beal J, Bartley B, Nguyen TT, Walczak N, Weston M, Zheng G, Nowak J, Lee P, Stubbs J, Gaffney N, Vaughn MW, Myers CJ, ... ... Haase S, et al. Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis. Acs Synthetic Biology. PMID 35099189 DOI: 10.1021/acssynbio.1c00305 |
0.775 |
|
| 2021 |
Motta FC, McGoff KA, Deckard A, Wolfe CR, Bonsignori M, Moody MA, Cavanaugh K, Denny TN, Harer J, Haase SB. Assessment of Simulated Surveillance Testing and Quarantine in a SARS-CoV-2-Vaccinated Population of Students on a University Campus. Jama Health Forum. 2: e213035. PMID 35977169 DOI: 10.1001/jamahealthforum.2021.3035 |
0.586 |
|
| 2021 |
Moseley RC, Campione S, Cummins B, Motta F, Haase SB. Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline. Journal of Visualized Experiments : Jove. PMID 34958073 DOI: 10.3791/63084 |
0.782 |
|
| 2021 |
Saelens JW, Petersen JEV, Freedman E, Moseley RC, Konaté D, Diakité SAS, Traoré K, Vance N, Fairhurst RM, Diakité M, Haase SB, Taylor SM. Impact of Sickle Cell Trait Hemoglobin on the Intraerythrocytic Transcriptional Program of Plasmodium falciparum. Msphere. 6: e0075521. PMID 34668757 DOI: 10.1128/mSphere.00755-21 |
0.791 |
|
| 2021 |
Moseley RC, Motta F, Tuskan GA, Haase SB, Yang X. Inference of Gene Regulatory Network Uncovers the Linkage between Circadian Clock and Crassulacean Acid Metabolism in . Cells. 10. PMID 34571864 DOI: 10.3390/cells10092217 |
0.793 |
|
| 2021 |
Zaitzeff A, Leiby N, Motta FC, Haase SB, Singer JM. Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins. Bioinformatics (Oxford, England). PMID 34415301 DOI: 10.1093/bioinformatics/btab603 |
0.608 |
|
| 2020 |
Denny TN, Andrews L, Bonsignori M, Cavanaugh K, Datto MB, Deckard A, DeMarco CT, DeNaeyer N, Epling CA, Gurley T, Haase SB, Hallberg C, Harer J, Kneifel CL, Lee MJ, et al. Implementation of a Pooled Surveillance Testing Program for Asymptomatic SARS-CoV-2 Infections on a College Campus - Duke University, Durham, North Carolina, August 2-October 11, 2020. Mmwr. Morbidity and Mortality Weekly Report. 69: 1743-1747. PMID 33211678 DOI: 10.15585/mmwr.mm6946e1 |
0.602 |
|
| 2020 |
Smith LM, Motta FC, Chopra G, Moch JK, Nerem RR, Cummins B, Roche KE, Kelliher CM, Leman AR, Harer J, Gedeon T, Waters NC, Haase SB. An intrinsic oscillator drives the blood stage cycle of the malaria parasite . Science (New York, N.Y.). 368: 754-759. PMID 32409472 DOI: 10.1126/Science.Aba4357 |
0.802 |
|
| 2020 |
Berry E, Cummins B, Nerem RR, Smith LM, Haase SB, Gedeon T. Using extremal events to characterize noisy time series. Journal of Mathematical Biology. PMID 32008103 DOI: 10.1007/S00285-020-01471-4 |
0.654 |
|
| 2019 |
Cho CY, Kelliher CM, Haase SB. The Cell-Cycle Transcriptional Network Generates and Transmits a Pulse of Transcription Once Each Cell Cycle. Cell Cycle (Georgetown, Tex.). PMID 30668223 DOI: 10.1080/15384101.2019.1570655 |
0.81 |
|
| 2018 |
Kelliher CM, Foster MW, Motta FC, Deckard A, Soderblom EJ, Moseley MA, Haase SB. Layers of regulation on cell-cycle gene expression in the budding yeast Saccharomyces cerevisiae. Molecular Biology of the Cell. mbcE18040255. PMID 30207828 DOI: 10.1091/Mbc.E18-04-0255 |
0.838 |
|
| 2017 |
Cho CY, Motta FC, Kelliher CM, Deckard A, Haase SB. Reconciling conflicting models for global control of cell-cycle transcription. Cell Cycle (Georgetown, Tex.). 1-14. PMID 28934013 DOI: 10.1080/15384101.2017.1367073 |
0.829 |
|
| 2017 |
Kelliher CM, Haase SB. Connecting virulence pathways to cell-cycle progression in the fungal pathogen Cryptococcus neoformans. Current Genetics. PMID 28265742 DOI: 10.1007/S00294-017-0688-5 |
0.828 |
|
| 2016 |
Kelliher CM, Leman AR, Sierra CS, Haase SB. Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus neoformans. Plos Genetics. 12: e1006453. PMID 27918582 DOI: 10.1371/Journal.Pgen.1006453 |
0.838 |
|
| 2016 |
McGoff KA, Guo X, Deckard A, Kelliher CM, Leman AR, Francey LJ, Hogenesch JB, Haase SB, Harer JL. The Local Edge Machine: inference of dynamic models of gene regulation. Genome Biology. 17: 214. PMID 27760556 DOI: 10.1186/S13059-016-1076-Z |
0.808 |
|
| 2015 |
Perea JA, Deckard A, Haase SB, Harer J. SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data. Bmc Bioinformatics. 16: 257. PMID 26277424 DOI: 10.1186/S12859-015-0645-6 |
0.696 |
|
| 2014 |
Bristow SL, Leman AR, Simmons Kovacs LA, Deckard A, Harer J, Haase SB. Checkpoints couple transcription network oscillator dynamics to cell-cycle progression. Genome Biology. 15: 446. PMID 25200947 DOI: 10.1186/S13059-014-0446-7 |
0.824 |
|
| 2014 |
Leman AR, Bristow SL, Haase SB. Analyzing transcription dynamics during the budding yeast cell cycle. Methods in Molecular Biology (Clifton, N.J.). 1170: 295-312. PMID 24906319 DOI: 10.1007/978-1-4939-0888-2_14 |
0.805 |
|
| 2014 |
Bristow SL, Leman AR, Haase SB. Cell cycle-regulated transcription: effectively using a genomics toolbox. Methods in Molecular Biology (Clifton, N.J.). 1170: 3-27. PMID 24906306 DOI: 10.1007/978-1-4939-0888-2_1 |
0.844 |
|
| 2014 |
Haase SB, Wittenberg C. Topology and control of the cell-cycle-regulated transcriptional circuitry. Genetics. 196: 65-90. PMID 24395825 DOI: 10.1534/Genetics.113.152595 |
0.813 |
|
| 2014 |
Bristow SL, Leman AR, Haase SB. Cell cycle-regulated transcription Methods of Molecular Biology. 1170. DOI: 10.1007/978-1-4939-888-2_1 |
0.832 |
|
| 2013 |
Deckard A, Anafi RC, Hogenesch JB, Haase SB, Harer J. Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. Bioinformatics (Oxford, England). 29: 3174-80. PMID 24058056 DOI: 10.1093/Bioinformatics/Btt541 |
0.695 |
|
| 2013 |
Guo X, Bernard A, Orlando DA, Haase SB, Hartemink AJ. Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program. Proceedings of the National Academy of Sciences of the United States of America. 110: E968-77. PMID 23388635 DOI: 10.1073/Pnas.1120991110 |
0.833 |
|
| 2013 |
Melville D, Jacobson JA, Haase S, Brandon C, Brigido MK, Fessell D. Ultrasound of displaced ulnar collateral ligament tears of the thumb: the Stener lesion revisited. Skeletal Radiology. 42: 667-73. PMID 23001117 DOI: 10.1007/s00256-012-1519-x |
0.579 |
|
| 2012 |
Chee MK, Haase SB. New and Redesigned pRS Plasmid Shuttle Vectors for Genetic Manipulation of Saccharomycescerevisiae. G3 (Bethesda, Md.). 2: 515-26. PMID 22670222 DOI: 10.1534/G3.111.001917 |
0.767 |
|
| 2012 |
Ho HJ, Lin TI, Chang HH, Haase SB, Huang S, Pyne S. Parametric modeling of cellular state transitions as measured with flow cytometry. Bmc Bioinformatics. 13: S5. PMID 22537009 DOI: 10.1186/1471-2105-13-S5-S5 |
0.653 |
|
| 2012 |
Simmons Kovacs LA, Mayhew MB, Orlando DA, Jin Y, Li Q, Huang C, Reed SI, Mukherjee S, Haase SB. Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network. Molecular Cell. 45: 669-79. PMID 22306294 DOI: 10.1016/J.Molcel.2011.12.033 |
0.815 |
|
| 2012 |
Mayhew MB, Guo X, Haase SB, Hartemink AJ. Close encounters of the collaborative kind Computer. 45: 24-30. DOI: 10.1109/Mc.2012.85 |
0.749 |
|
| 2012 |
Mayhew M, Guo X, Haase S, Hartemink A. Systems Biology Feedback (of the Collaborative Kind) Ieee Computer. 1-1. DOI: 10.1109/Mc.2012.118 |
0.778 |
|
| 2011 |
Mayhew MB, Robinson JW, Jung B, Haase SB, Hartemink AJ. A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments. Bioinformatics (Oxford, England). 27: i295-303. PMID 21685084 DOI: 10.1093/bioinformatics/btr244 |
0.817 |
|
| 2010 |
Chee MK, Haase SB. B-cyclin/CDKs regulate mitotic spindle assembly by phosphorylating kinesins-5 in budding yeast. Plos Genetics. 6: e1000935. PMID 20463882 DOI: 10.1371/Journal.Pgen.1000935 |
0.793 |
|
| 2010 |
Simmons Kovacs LA, Haase SB. Cohesin: it's not just for chromosomes anymore. Cell Cycle (Georgetown, Tex.). 9: 1750-3. PMID 20436287 DOI: 10.4161/Cc.9.9.11792 |
0.799 |
|
| 2009 |
Orlando DA, Iversen ES, Hartemink AJ, Haase SB. A branching process model for flow cytometry and budding index measurements in cell synchrony experiments. The Annals of Applied Statistics. 3: 1521-1541. PMID 21853014 DOI: 10.1214/09-Aoas264 |
0.794 |
|
| 2008 |
Simmons Kovacs LA, Orlando DA, Haase SB. Transcription networks and cyclin/CDKs: the yin and yang of cell cycle oscillators. Cell Cycle (Georgetown, Tex.). 7: 2626-9. PMID 18758238 DOI: 10.4161/Cc.7.17.6515 |
0.834 |
|
| 2008 |
Simmons Kovacs LA, Nelson CL, Haase SB. Intrinsic and cyclin-dependent kinase-dependent control of spindle pole body duplication in budding yeast. Molecular Biology of the Cell. 19: 3243-53. PMID 18480404 DOI: 10.1091/Mbc.E08-02-0148 |
0.811 |
|
| 2008 |
Orlando DA, Lin CY, Bernard A, Wang JY, Socolar JE, Iversen ES, Hartemink AJ, Haase SB. Global control of cell-cycle transcription by coupled CDK and network oscillators. Nature. 453: 944-7. PMID 18463633 DOI: 10.1038/Nature06955 |
0.849 |
|
| 2007 |
Haase SB, Lew DJ. Microtubule organization: cell shape is destiny. Current Biology : Cb. 17: R249-51. PMID 17407755 DOI: 10.1016/J.Cub.2007.02.003 |
0.736 |
|
| 2007 |
Orlando DA, Lin CY, Bernard A, Iversen ES, Hartemink AJ, Haase SB. A probabilistic model for cell cycle distributions in synchrony experiments. Cell Cycle (Georgetown, Tex.). 6: 478-88. PMID 17329975 DOI: 10.4161/Cc.6.4.3859 |
0.803 |
|
| 2006 |
Jackson LP, Reed SI, Haase SB. Distinct mechanisms control the stability of the related S-phase cyclins Clb5 and Clb6 Molecular and Cellular Biology. 26: 2456-2466. PMID 16508019 DOI: 10.1128/Mcb.26.6.2456-2466.2006 |
0.737 |
|
| 2004 |
Haase SB. Cell cycle analysis of budding yeast using SYTOX Green. Current Protocols in Cytometry / Editorial Board, J. Paul Robinson, Managing Editor ... [Et Al.]. Unit 7.23. PMID 18770800 DOI: 10.1002/0471142956.Cy0723S26 |
0.726 |
|
| 2002 |
Haase SB, Reed SI. Improved flow cytometric analysis of the budding yeast cell cycle. Cell Cycle (Georgetown, Tex.). 1: 132-6. PMID 12429922 |
0.737 |
|
| 2002 |
Haase SB, Clarke DJ. A festival of cell-cycle controls. Trends in Cell Biology. 11: 445-6. PMID 11684413 DOI: 10.1016/S0962-8924(01)02088-8 |
0.72 |
|
| 2001 |
Haase SB, Winey M, Reed SI. Multi-step control of spindle pole body duplication by cyclin-dependent kinase. Nature Cell Biology. 3: 38-42. PMID 11146624 DOI: 10.1038/35050543 |
0.71 |
|
| 1999 |
Haase SB, Reed SI. Evidence that a free-running oscillator drives G1 events in the budding yeast cell cycle. Nature. 401: 394-7. PMID 10517640 DOI: 10.1038/43927 |
0.792 |
|
| 1997 |
Haase SB, Lew DJ. Flow cytometric analysis of DNA content in budding yeast. Methods in Enzymology. 283: 322-32. PMID 9251030 DOI: 10.1016/S0076-6879(97)83026-1 |
0.767 |
|
| 1994 |
Haase SB, Heinzel SS, Calos MP. Transcription inhibits the replication of autonomously replicating plasmids in human cells. Molecular and Cellular Biology. 14: 2516-24. PMID 8139554 DOI: 10.1128/Mcb.14.4.2516 |
0.762 |
|
| 1991 |
Haase SB, Calos MP. Replication control of autonomously replicating human sequences. Nucleic Acids Research. 19: 5053-8. PMID 1656387 DOI: 10.1093/Nar/19.18.5053 |
0.769 |
|
| 1989 |
Krysan PJ, Haase SB, Calos MP. Isolation of human sequences that replicate autonomously in human cells. Molecular and Cellular Biology. 9: 1026-33. PMID 2542763 DOI: 10.1128/Mcb.9.3.1026 |
0.731 |
|
| 1989 |
Haase SB, Heinzel SS, Krysan PJ, Calos MP. Improved EBV shuttle vectors. Mutation Research. 220: 125-32. PMID 2538736 DOI: 10.1016/0165-1110(89)90018-3 |
0.741 |
|
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