David Segal, Ph.D. - Publications

Affiliations: 
UC Davis Genome Center UC Davis Genome Center 

65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Saha K, Sontheimer EJ, Brooks PJ, Dwinell MR, Gersbach CA, Liu DR, Murray SA, Tsai SQ, Wilson RC, Anderson DG, Asokan A, Banfield JF, Bankiewicz KS, Bao G, Bulte JWM, ... ... Segal DJ, et al. The NIH Somatic Cell Genome Editing program. Nature. 592: 195-204. PMID 33828315 DOI: 10.1038/s41586-021-03191-1  0.51
2020 Teh CE, Gong JN, Segal D, Tan T, Vandenberg CJ, Fedele PL, Low MSY, Grigoriadis G, Harrison SJ, Strasser A, Roberts AW, Huang DCS, Nolan GP, Gray DHD, Ko ME. Deep profiling of apoptotic pathways with mass cytometry identifies a synergistic drug combination for killing myeloma cells. Cell Death and Differentiation. PMID 31988495 DOI: 10.1038/S41418-020-0498-Z  0.306
2019 Lee EF, Harris TJ, Tran S, Evangelista M, Arulananda S, John T, Ramnac C, Hobbs C, Zhu H, Gunasingh G, Segal D, Behren A, Cebon J, Dobrovic A, Mariadason JM, et al. BCL-XL and MCL-1 are the key BCL-2 family proteins in melanoma cell survival. Cell Death & Disease. 10: 342. PMID 31019203 DOI: 10.1038/S41419-019-1568-3  0.344
2018 Moujalled DM, Pomilio G, Ghiurau C, Ivey A, Salmon J, Rijal S, Macraild S, Zhang L, Teh TC, Tiong IS, Lan P, Chanrion M, Claperon A, Rocchetti F, Zichi A, ... ... Segal D, et al. Combining BH3-Mimetics to target both BCL-2 and MCL1 has potent activity in pre-clinical models of acute myeloid leukemia. Leukemia. PMID 30214012 DOI: 10.1038/S41375-018-0261-3  0.31
2018 Ha DT, Ghosh S, Ahn CH, Segal DJ, Kim MS. Pathogen-specific DNA sensing with engineered zinc finger proteins immobilized on a polymer chip. The Analyst. PMID 30043772 DOI: 10.1039/C8An00395E  0.302
2018 O'Geen H, Ren C, Coggins NB, Bates SL, Segal DJ. Unexpected binding behaviors of bacterial Argonautes in human cells cast doubts on their use as targetable gene regulators. Plos One. 13: e0193818. PMID 29584750 DOI: 10.1371/journal.pone.0193818  0.343
2018 Gallego-Bartolomé J, Gardiner J, Liu W, Papikian A, Ghoshal B, Kuo HY, Zhao JM, Segal DJ, Jacobsen SE. Targeted DNA demethylation of thegenome using the human TET1 catalytic domain. Proceedings of the National Academy of Sciences of the United States of America. PMID 29444862 DOI: 10.1073/Pnas.1716945115  0.305
2017 Sharp PP, Garnier JM, Hatfaludi T, Xu Z, Segal D, Jarman KE, Jousset H, Garnham A, Feutrill JT, Cuzzupe A, Hall P, Taylor S, Walkley CR, Tyler D, Dawson MA, et al. Design, Synthesis, and Biological Activity of 1,2,3-Triazolobenzodiazepine BET Bromodomain Inhibitors. Acs Medicinal Chemistry Letters. 8: 1298-1303. PMID 29259751 DOI: 10.1021/Acsmedchemlett.7B00389  0.341
2017 Teh TC, Nguyen NY, Moujalled DM, Segal D, Pomilio G, Rijal S, Jabbour A, Cummins K, Lackovic K, Blombery P, Thompson E, Ekert PG, Lessene G, Glaser SP, Huang DCS, et al. Enhancing venetoclax activity in acute myeloid leukemia by co-targeting MCL1. Leukemia. PMID 28751770 DOI: 10.1038/Leu.2017.243  0.347
2017 Antignani A, Segal D, Simon N, Kreitman RJ, Huang D, FitzGerald DJ. Essential role for Bim in mediating the apoptotic and antitumor activities of immunotoxins. Oncogene. PMID 28436946 DOI: 10.1038/Onc.2017.111  0.349
2017 Carrington EM, Zhan Y, Brady JL, Zhang JG, Sutherland RM, Anstee NS, Schenk RL, Vikstrom IB, Delconte RB, Segal D, Huntington ND, Bouillet P, Tarlinton DM, Huang DC, Strasser A, et al. Anti-apoptotic proteins BCL-2, MCL-1 and A1 summate collectively to maintain survival of immune cell populations both in vitro and in vivo. Cell Death and Differentiation. PMID 28362427 DOI: 10.1038/Cdd.2017.30  0.314
2017 Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. Corrigendum: SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 543: 136. PMID 28178234 DOI: 10.1038/Nature21398  0.304
2017 De Leon KJ, Antrobus S, Denney Allen P, Marty I, Segal D. A Method for Validating Mutations Associated with Malignant Hyperthermia using CRISPR/Cas9 and Dual Integrase Cassette Exchange Biophysical Journal. 112: 98a. DOI: 10.1016/J.Bpj.2016.11.566  0.312
2016 Kotschy A, Szlavik Z, Murray J, Davidson J, Maragno AL, Le Toumelin-Braizat G, Chanrion M, Kelly GL, Gong JN, Moujalled DM, Bruno A, Csekei M, Paczal A, Szabo ZB, Sipos S, ... ... Segal D, et al. The MCL1 inhibitor S63845 is tolerable and effective in diverse cancer models. Nature. PMID 27760111 DOI: 10.1038/Nature19830  0.344
2016 Gong JN, Khong T, Segal D, Yao Y, Riffkin CD, Garnier JM, Khaw SL, Lessene G, Spencer A, Herold MJ, Roberts AW, Huang DC. Hierarchy for targeting pro-survival BCL2 family proteins in multiple myeloma: pivotal role of MCL1. Blood. PMID 27465916 DOI: 10.1182/Blood-2016-03-704908  0.359
2016 Xu Z, Sharp PP, Yao Y, Segal D, Ang CH, Khaw SL, Aubrey BJ, Gong J, Kelly GL, Herold MJ, Strasser A, Roberts AW, Alexander WS, Burns CJ, Huang DC, et al. BET inhibition represses miR17-92 to drive BIM-initiated apoptosis of normal and transformed hematopoietic cells. Leukemia. PMID 27055867 DOI: 10.1038/Leu.2016.52  0.345
2016 Yao Y, Gong J, Segal D, Riffkin CD, Delft MFv, Roberts AW, Huang DC. The Role of BAX/BAK-Mediated Apoptosis for the Cytotoxic Action of Anti-Myeloma Agents Blood. 128: 5706-5706. DOI: 10.1182/Blood.V128.22.5706.5706  0.313
2016 Gong J, Khong T, Segal D, Yao Y, Delft MFv, Spencer A, Roberts AW, Huang DC. Targeting the Pro-Survival BCL2 Proteins with BH3 Mimetic Compounds for Treating Multiple Myeloma Blood. 128: 3293-3293. DOI: 10.1182/Blood.V128.22.3293.3293  0.356
2015 Phillipson LJ, Segal DH, Nero TL, Parker MW, Wan SS, de Silva M, Guthridge MA, Wei AH, Burns CJ. Discovery and SAR of novel pyrazolo[1,5-a]pyrimidines as inhibitors of CDK9. Bioorganic & Medicinal Chemistry. 23: 6280-96. PMID 26349627 DOI: 10.1016/J.Bmc.2015.08.035  0.349
2014 Rader C, Segal DJ, Shabat D. Carlos F. Barbas III (1964-2014): Visionary at the interface of chemistry and biology. Acs Chemical Biology. 9: 1645-6. PMID 25123302 DOI: 10.1021/Cb5005993  0.557
2014 Singer R, Atar S, Atias O, Oron E, Segal D, Hirsch JA, Tuller T, Orian A, Chamovitz DA. Drosophila COP9 signalosome subunit 7 interacts with multiple genomic loci to regulate development. Nucleic Acids Research. 42: 9761-70. PMID 25106867 DOI: 10.1093/Nar/Gku723  0.305
2014 Barrilleaux BL, Burow D, Lockwood SH, Yu A, Segal DJ, Knoepfler PS. Miz-1 activates gene expression via a novel consensus DNA binding motif. Plos One. 9: e101151. PMID 24983942 DOI: 10.1371/Journal.Pone.0101151  0.343
2013 Owens JB, Mauro D, Stoytchev I, Bhakta MS, Kim MS, Segal DJ, Moisyadi S. Transcription activator like effector (TALE)-directed piggyBac transposition in human cells. Nucleic Acids Research. 41: 9197-207. PMID 23921635 DOI: 10.1093/Nar/Gkt677  0.388
2013 Thomas D, Powell JA, Vergez F, Segal DH, Nguyen NY, Baker A, Teh TC, Barry EF, Sarry JE, Lee EM, Nero TL, Jabbour AM, Pomilio G, Green BD, Manenti S, et al. Targeting acute myeloid leukemia by dual inhibition of PI3K signaling and Cdk9-mediated Mcl-1 transcription. Blood. 122: 738-48. PMID 23775716 DOI: 10.1182/Blood-2012-08-447441  0.334
2013 Vandevenne M, Jacques DA, Artuz C, Nguyen CD, Kwan AH, Segal DJ, Matthews JM, Crossley M, Guss JM, Mackay JP. New insights into DNA recognition by zinc fingers revealed by structural analysis of the oncoprotein ZNF217. The Journal of Biological Chemistry. 288: 10616-27. PMID 23436653 DOI: 10.1074/Jbc.M112.441451  0.328
2013 Meckler JF, Bhakta MS, Kim MS, Ovadia R, Habrian CH, Zykovich A, Yu A, Lockwood SH, Morbitzer R, Elsäesser J, Lahaye T, Segal DJ, Baldwin EP. Quantitative analysis of TALE-DNA interactions suggests polarity effects. Nucleic Acids Research. 41: 4118-28. PMID 23408851 DOI: 10.1093/Nar/Gkt085  0.346
2013 Burns CJ, Segal D, Wilks AF. The Use of JAK-specific inhibitors as chemical biology tools. Methods in Molecular Biology (Clifton, N.J.). 967: 99-113. PMID 23296724 DOI: 10.1007/978-1-62703-242-1_7  0.3
2013 Bhakta MS, Henry IM, Ousterout DG, Das KT, Lockwood SH, Meckler JF, Wallen MC, Zykovich A, Yu Y, Leo H, Xu L, Gersbach CA, Segal DJ. Highly active zinc-finger nucleases by extended modular assembly. Genome Research. 23: 530-8. PMID 23222846 DOI: 10.1101/Gr.143693.112  0.574
2012 Meier JL, Yu AS, Korf I, Segal DJ, Dervan PB. Guiding the design of synthetic DNA-binding molecules with massively parallel sequencing. Journal of the American Chemical Society. 134: 17814-22. PMID 23013524 DOI: 10.1021/Ja308888C  0.316
2012 Owens JB, Urschitz J, Stoytchev I, Dang NC, Stoytcheva Z, Belcaid M, Maragathavally KJ, Coates CJ, Segal DJ, Moisyadi S. Chimeric piggyBac transposases for genomic targeting in human cells. Nucleic Acids Research. 40: 6978-91. PMID 22492708 DOI: 10.1093/Nar/Gks309  0.319
2011 Shimizu Y, Şöllü C, Meckler JF, Adriaenssens A, Zykovich A, Cathomen T, Segal DJ. Adding fingers to an engineered zinc finger nuclease can reduce activity. Biochemistry. 50: 5033-41. PMID 21528840 DOI: 10.1021/Bi200393G  0.321
2011 Kim MS, Stybayeva G, Lee JY, Revzin A, Segal DJ. A zinc finger protein array for the visual detection of specific DNA sequences for diagnostic applications. Nucleic Acids Research. 39: e29. PMID 21134909 DOI: 10.1093/Nar/Gkq1214  0.327
2010 Furman JL, Badran AH, Ajulo O, Porter JR, Stains CI, Segal DJ, Ghosh I. Toward a general approach for RNA-templated hierarchical assembly of split-proteins. Journal of the American Chemical Society. 132: 11692-701. PMID 20681585 DOI: 10.1021/Ja104395B  0.301
2009 Zykovich A, Korf I, Segal DJ. Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing. Nucleic Acids Research. 37: e151. PMID 19843614 DOI: 10.1093/Nar/Gkp802  0.367
2009 Shimizu Y, Bhakta MS, Segal DJ. Restricted spacer tolerance of a zinc finger nuclease with a six amino acid linker. Bioorganic & Medicinal Chemistry Letters. 19: 3970-2. PMID 19289279 DOI: 10.1016/j.bmcl.2009.02.109  0.337
2008 Cathomen T, Segal DJ, Brondani V, Müller-Lerch F. Generation and functional analysis of zinc finger nucleases. Methods in Molecular Biology (Clifton, N.J.). 434: 277-90. PMID 18470651 DOI: 10.1007/978-1-60327-248-3_17  0.341
2008 Brayer KJ, Kulshreshtha S, Segal DJ. The protein-binding potential of C2H2 zinc finger domains. Cell Biochemistry and Biophysics. 51: 9-19. PMID 18286240 DOI: 10.1007/S12013-008-9007-6  0.361
2008 Brayer KJ, Segal DJ. Keep your fingers off my DNA: protein-protein interactions mediated by C2H2 zinc finger domains. Cell Biochemistry and Biophysics. 50: 111-31. PMID 18253864 DOI: 10.1007/S12013-008-9008-5  0.312
2007 Szczepek M, Brondani V, Büchel J, Serrano L, Segal DJ, Cathomen T. Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases. Nature Biotechnology. 25: 786-93. PMID 17603476 DOI: 10.1038/Nbt1317  0.354
2007 Hartsock WJ, Cohen JD, Segal DJ. Uranyl acetate as a direct inhibitor of DNA-binding proteins. Chemical Research in Toxicology. 20: 784-9. PMID 17432879 DOI: 10.1021/tx600347k  0.325
2007 Gommans WM, McLaughlin PM, Lindhout BI, Segal DJ, Wiegman DJ, Haisma HJ, van der Zaal BJ, Rots MG. Engineering zinc finger protein transcription factors to downregulate the epithelial glycoprotein-2 promoter as a novel anti-cancer treatment. Molecular Carcinogenesis. 46: 391-401. PMID 17186549 DOI: 10.1002/Mc.20289  0.364
2006 Carroll D, Morton JJ, Beumer KJ, Segal DJ. Design, construction and in vitro testing of zinc finger nucleases. Nature Protocols. 1: 1329-41. PMID 17406419 DOI: 10.1038/Nprot.2006.231  0.349
2006 Segal DJ, Crotty JW, Bhakta MS, Barbas CF, Horton NC. Structure of Aart, a designed six-finger zinc finger peptide, bound to DNA. Journal of Molecular Biology. 363: 405-21. PMID 16963084 DOI: 10.1016/J.Jmb.2006.08.016  0.374
2006 Ooi AT, Stains CI, Ghosh I, Segal DJ. Sequence-enabled reassembly of beta-lactamase (SEER-LAC): a sensitive method for the detection of double-stranded DNA. Biochemistry. 45: 3620-5. PMID 16533044 DOI: 10.1021/Bi0517032  0.32
2006 Eberhardy SR, Goncalves J, Coelho S, Segal DJ, Berkhout B, Barbas CF. Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding site. Journal of Virology. 80: 2873-83. PMID 16501096 DOI: 10.1128/Jvi.80.6.2873-2883.2006  0.447
2005 Dreier B, Fuller RP, Segal DJ, Lund CV, Blancafort P, Huber A, Koksch B, Barbas CF. Development of zinc finger domains for recognition of the 5'-CNN-3' family DNA sequences and their use in the construction of artificial transcription factors. The Journal of Biological Chemistry. 280: 35588-97. PMID 16107335 DOI: 10.1074/jbc.M506654200  0.671
2005 Stains CI, Porter JR, Ooi AT, Segal DJ, Ghosh I. DNA sequence-enabled reassembly of the green fluorescent protein. Journal of the American Chemical Society. 127: 10782-3. PMID 16076155 DOI: 10.1021/Ja051969W  0.367
2005 Alwin S, Gere MB, Guhl E, Effertz K, Barbas CF, Segal DJ, Weitzman MD, Cathomen T. Custom zinc-finger nucleases for use in human cells. Molecular Therapy : the Journal of the American Society of Gene Therapy. 12: 610-7. PMID 16039907 DOI: 10.1016/j.ymthe.2005.06.094  0.369
2005 Kolb AF, Coates CJ, Kaminski JM, Summers JB, Miller AD, Segal DJ. Site-directed genome modification: nucleic acid and protein modules for targeted integration and gene correction. Trends in Biotechnology. 23: 399-406. PMID 15982766 DOI: 10.1016/J.Tibtech.2005.06.005  0.322
2004 Blancafort P, Segal DJ, Barbas CF. Designing transcription factor architectures for drug discovery. Molecular Pharmacology. 66: 1361-71. PMID 15340042 DOI: 10.1124/Mol.104.002758  0.688
2004 Håkansson P, Segal D, Lassen C, Gullberg U, Morse HC, Fioretos T, Meltzer PS. Identification of genes differentially regulated by the P210 BCR/ABL1 fusion oncogene using cDNA microarrays. Experimental Hematology. 32: 476-482. PMID 15145216 DOI: 10.1016/J.Exphem.2004.02.012  0.332
2004 Segal DJ, Gonçalves J, Eberhardy S, Swan CH, Torbett BE, Li X, Barbas CF. Attenuation of HIV-1 Replication in Primary Human Cells with a Designed Zinc Finger Transcription Factor Journal of Biological Chemistry. 279: 14509-14519. PMID 14734553 DOI: 10.1074/Jbc.M400349200  0.434
2004 Tan W, Zhu K, Segal DJ, Barbas CF, Chow SA. Fusion proteins consisting of human immunodeficiency virus type 1 integrase and the designed polydactyl zinc finger protein E2C direct integration of viral DNA into specific sites. Journal of Virology. 78: 1301-13. PMID 14722285 DOI: 10.1128/Jvi.78.3.1301-1313.2004  0.344
2003 Segal DJ, Beerli RR, Blancafort P, Dreier B, Effertz K, Huber A, Koksch B, Lund CV, Magnenat L, Valente D, Barbas CF. Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteins. Biochemistry. 42: 2137-48. PMID 12590603 DOI: 10.1021/Bi026806O  0.671
2002 Segal DJ. The use of zinc finger peptides to study the role of specific factor binding sites in the chromatin environment Methods. 26: 76-83. PMID 12054906 DOI: 10.1016/S1046-2023(02)00009-9  0.35
2002 Segal DJ, Barbas CF. Custom DNA-binding proteins come of age: polydactyl zinc-finger proteins. Current Opinion in Biotechnology. 12: 632-7. PMID 11849947 DOI: 10.1016/S0958-1669(01)00272-5  0.384
2001 Dreier B, Beerli RR, Segal DJ, Flippin JD, Barbas CF. Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors. The Journal of Biological Chemistry. 276: 29466-78. PMID 11340073 DOI: 10.1074/Jbc.M102604200  0.444
2001 Bibikova M, Carroll D, Segal DJ, Trautman JK, Smith J, Kim YG, Chandrasegaran S. Stimulation of homologous recombination through targeted cleavage by chimeric nucleases. Molecular and Cellular Biology. 21: 289-97. PMID 11113203 DOI: 10.1128/Mcb.21.1.289-297.2001  0.351
2000 Dreier B, Segal DJ, Barbas CF. Insights into the molecular recognition of the 5'-GNN-3' family of DNA sequences by zinc finger domains. Journal of Molecular Biology. 303: 489-502. PMID 11054286 DOI: 10.1006/jmbi.2000.4133  0.407
2000 Barbas CF, Rader C, Segal DJ, List B, Turner JM. From catalytic asymmetric synthesis to the transcriptional regulation of genes: in vivo and in vitro evolution of proteins. Advances in Protein Chemistry. 55: 317-66. PMID 11050938 DOI: 10.1016/S0065-3233(01)55008-1  0.648
2000 Segal DJ, Barbas CF. Design of novel sequence-specific DNA-binding proteins. Current Opinion in Chemical Biology. 4: 34-9. PMID 10679372 DOI: 10.1016/S1367-5931(99)00048-4  0.445
1999 Gabriele L, Phung J, Fukumoto J, Segal D, Wang IM, Giannakakou P, Giese NA, Ozato K, Morse HC. Regulation of apoptosis in myeloid cells by interferon consensus sequence-binding protein. The Journal of Experimental Medicine. 190: 411-21. PMID 10430629 DOI: 10.1084/Jem.190.3.411  0.351
1999 Segal DJ, Dreier B, Beerli RR, Barbas CF. Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences. Proceedings of the National Academy of Sciences of the United States of America. 96: 2758-63. PMID 10077584 DOI: 10.1073/pnas.96.6.2758  0.422
1999 Beerli RR, Segal DJ, Dreier B, Barbas CF. Toward controlling gene expression at will: specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks. Proceedings of the National Academy of Sciences of the United States of America. 95: 14628-33. PMID 9843940 DOI: 10.1073/pnas.95.25.14628  0.398
1997 Liu Q, Segal DJ, Ghiara JB, Barbas CF. Design of polydactyl zinc-finger proteins for unique addressing within complex genomes. Proceedings of the National Academy of Sciences of the United States of America. 94: 5525-30. PMID 9159105 DOI: 10.1073/pnas.94.11.5525  0.419
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