Morgan Langille - Publications

Affiliations: 
2009-2011 University of California, Davis, Davis, CA 

39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Douglas GM, Bielawski JP, Langille MGI. Re-evaluating the relationship between missing heritability and the microbiome. Microbiome. 8: 87. PMID 32513310 DOI: 10.1186/s40168-020-00839-4  0.36
2020 Douglas GM, Maffei VJ, Zaneveld JR, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI. PICRUSt2 for prediction of metagenome functions. Nature Biotechnology. PMID 32483366 DOI: 10.1038/s41587-020-0548-6  0.36
2020 Nejman D, Livyatan I, Fuks G, Gavert N, Zwang Y, Geller LT, Rotter-Maskowitz A, Weiser R, Mallel G, Gigi E, Meltser A, Douglas GM, Kamer I, Gopalakrishnan V, Dadosh T, ... ... Langille MGI, et al. The human tumor microbiome is composed of tumor type-specific intracellular bacteria. Science (New York, N.Y.). 368: 973-980. PMID 32467386 DOI: 10.1126/science.aay9189  0.36
2020 Palau M, Piqué N, Comeau AM, Douglas GM, Ramírez-Lázaro MJ, Lario S, Calvet X, Langille MGI, Miñana-Galbis D. Detection of Microevolution and Multiple Infection from Gastric Biopsies by Housekeeping Gene Amplicon Sequencing. Pathogens (Basel, Switzerland). 9. PMID 32033301 DOI: 10.3390/pathogens9020097  0.36
2019 Douglas GM, Langille MGI. Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes. Genome Biology and Evolution. PMID 31504488 DOI: 10.1093/gbe/evz184  0.36
2019 Yurgel SN, Nearing JT, Douglas GM, Langille MGI. Metagenomic Functional Shifts to Plant Induced Environmental Changes. Frontiers in Microbiology. 10: 1682. PMID 31404278 DOI: 10.3389/fmicb.2019.01682  0.36
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Langille MGI, et al. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31399723 DOI: 10.1038/s41587-019-0252-6  0.36
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Langille MGI, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31341288 DOI: 10.1038/s41587-019-0209-9  0.36
2019 Singh R, Chandrashekharappa S, Bodduluri SR, Baby BV, Hegde B, Kotla NG, Hiwale AA, Saiyed T, Patel P, Vijay-Kumar M, Langille MGI, Douglas GM, Cheng X, Rouchka EC, Waigel SJ, et al. Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway. Nature Communications. 10: 89. PMID 30626868 DOI: 10.1038/s41467-018-07859-7  0.36
2018 Douglas GM, Beiko RG, Langille MGI. Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt. Methods in Molecular Biology (Clifton, N.J.). 1849: 169-177. PMID 30298254 DOI: 10.1007/978-1-4939-8728-3_11  0.48
2018 Douglas GM, Comeau AM, Langille MGI. Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow. Methods in Molecular Biology (Clifton, N.J.). 1849: 131-141. PMID 30298252 DOI: 10.1007/978-1-4939-8728-3_9  0.36
2018 Nearing JT, Douglas GM, Comeau AM, Langille MGI. Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches. Peerj. 6: e5364. PMID 30123705 DOI: 10.7717/peerj.5364  0.36
2018 Yurgel SN, Douglas GM, Dusault A, Percival D, Langille MGI. Dissecting Community Structure in Wild Blueberry Root and Soil Microbiome. Frontiers in Microbiology. 9: 1187. PMID 29922264 DOI: 10.3389/fmicb.2018.01187  0.36
2018 Douglas GM, Hansen R, Jones CMA, Dunn KA, Comeau AM, Bielawski JP, Tayler R, El-Omar EM, Russell RK, Hold GL, Langille MGI, Van Limbergen J. Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn's disease. Microbiome. 6: 13. PMID 29335008 DOI: 10.1186/s40168-018-0398-3  0.36
2017 Comeau AM, Douglas GM, Langille MG. Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research. Msystems. 2. PMID 28066818 DOI: 10.1128/mSystems.00127-16  0.36
2016 Miller RR, Langille MG, Montoya V, Crisan A, Stefanovic A, Martin I, Hoang L, Patrick DM, Romney M, Tyrrell G, Jones SJ, Brinkman FS, Tang P. Genomic Analysis of a Serotype 5 Streptococcus pneumoniae Outbreak in British Columbia, Canada, 2005-2009. The Canadian Journal of Infectious Diseases & Medical Microbiology = Journal Canadien Des Maladies Infectieuses Et De La Microbiologie MéDicale. 2016: 5381871. PMID 27366170 DOI: 10.1155/2016/5381871  0.76
2015 Meehan CJ, Langille MG, Beiko RG. Frailty and the Microbiome. Interdisciplinary Topics in Gerontology and Geriatrics. 41: 54-65. PMID 26301979 DOI: 10.1159/000381162  0.48
2015 Laird MR, Langille MG, Brinkman FS. GenomeD3Plot: A library for rich, interactive visualizations of genomic data in web applications. Bioinformatics (Oxford, England). PMID 26093150 DOI: 10.1093/bioinformatics/btv376  0.84
2015 Dhillon BK, Laird MR, Shay JA, Winsor GL, Lo R, Nizam F, Pereira SK, Waglechner N, McArthur AG, Langille MG, Brinkman FS. IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis. Nucleic Acids Research. 43: W104-8. PMID 25916842 DOI: 10.1093/nar/gkv401  0.84
2015 Hester CM, Jala VR, Langille MG, Umar S, Greiner KA, Haribabu B. Fecal microbes, short chain fatty acids, and colorectal cancer across racial/ethnic groups. World Journal of Gastroenterology : Wjg. 21: 2759-69. PMID 25759547 DOI: 10.3748/wjg.v21.i9.2759  0.76
2014 Langille MG, Meehan CJ, Koenig JE, Dhanani AS, Rose RA, Howlett SE, Beiko RG. Microbial shifts in the aging mouse gut. Microbiome. 2: 50. PMID 25520805 DOI: 10.1186/s40168-014-0050-9  0.76
2014 Xu Z, Malmer D, Langille MG, Way SF, Knight R. Which is more important for classifying microbial communities: who's there or what they can do? The Isme Journal. 8: 2357-9. PMID 25171332 DOI: 10.1038/ismej.2014.157  0.76
2014 Boon E, Meehan CJ, Whidden C, Wong DH, Langille MG, Beiko RG. Interactions in the microbiome: communities of organisms and communities of genes. Fems Microbiology Reviews. 38: 90-118. PMID 23909933 DOI: 10.1111/1574-6976.12035  0.76
2013 Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature Biotechnology. 31: 814-21. PMID 23975157 DOI: 10.1038/nbt.2676  0.76
2013 Parks DH, Mankowski T, Zangooei S, Porter MS, Armanini DG, Baird DJ, Langille MG, Beiko RG. GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework. Plos One. 8: e69885. PMID 23922841 DOI: 10.1371/journal.pone.0069885  0.76
2013 Dhillon BK, Chiu TA, Laird MR, Langille MG, Brinkman FS. IslandViewer update: Improved genomic island discovery and visualization. Nucleic Acids Research. 41: W129-32. PMID 23677610 DOI: 10.1093/nar/gkt394  0.84
2012 Sharpton TJ, Jospin G, Wu D, Langille MG, Pollard KS, Eisen JA. Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource. Bmc Bioinformatics. 13: 264. PMID 23061897 DOI: 10.1186/1471-2105-13-264  0.76
2012 Jiang X, Langille MG, Neches RY, Elliot M, Levin SA, Eisen JA, Weitz JS, Dushoff J. Functional biogeography of ocean microbes revealed through non-negative matrix factorization. Plos One. 7: e43866. PMID 23049741 DOI: 10.1371/journal.pone.0043866  0.76
2012 Lynch EA, Langille MG, Darling A, Wilbanks EG, Haltiner C, Shao KS, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT. Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux. Plos One. 7: e41389. PMID 22848480 DOI: 10.1371/journal.pone.0041389  0.76
2012 Langille MG, Laird MR, Hsiao WW, Chiu TA, Eisen JA, Brinkman FS. MicrobeDB: a locally maintainable database of microbial genomic sequences. Bioinformatics (Oxford, England). 28: 1947-8. PMID 22576174 DOI: 10.1093/bioinformatics/bts273  0.76
2012 Langille MGI, Meehan CJ, Beiko RG. Human microbiome: A genetic bazaar for microbes? Current Biology. 22: R20-R22. PMID 22240474 DOI: 10.1016/j.cub.2011.11.023  0.76
2010 Langille MG, Eisen JA. BioTorrents: a file sharing service for scientific data. Plos One. 5: e10071. PMID 20418944 DOI: 10.1371/journal.pone.0010071  0.76
2010 Langille MG, Hsiao WW, Brinkman FS. Detecting genomic islands using bioinformatics approaches. Nature Reviews. Microbiology. 8: 373-82. PMID 20395967 DOI: 10.1038/nrmicro2350  0.84
2009 Langille MG, Brinkman FS. Bioinformatic detection of horizontally transferred DNA in bacterial genomes. F1000 Biology Reports. 1: 25. PMID 20948661 DOI: 10.3410/B1-25  0.84
2009 Ho Sui SJ, Fedynak A, Hsiao WW, Langille MG, Brinkman FS. The association of virulence factors with genomic islands. Plos One. 4: e8094. PMID 19956607 DOI: 10.1371/journal.pone.0008094  0.84
2009 Langille MG, Brinkman FS. IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics (Oxford, England). 25: 664-5. PMID 19151094 DOI: 10.1093/bioinformatics/btp030  0.84
2009 Winstanley C, Langille MG, Fothergill JL, Kukavica-Ibrulj I, Paradis-Bleau C, Sanschagrin F, Thomson NR, Winsor GL, Quail MA, Lennard N, Bignell A, Clarke L, Seeger K, Saunders D, Harris D, et al. Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa. Genome Research. 19: 12-23. PMID 19047519 DOI: 10.1101/gr.086082.108  0.76
2008 Langille MG, Hsiao WW, Brinkman FS. Evaluation of genomic island predictors using a comparative genomics approach. Bmc Bioinformatics. 9: 329. PMID 18680607 DOI: 10.1186/1471-2105-9-329  0.84
2006 Spidlen J, Gentleman RC, Haaland PD, Langille M, Le Meur N, Ochs MF, Schmitt C, Smith CA, Treister AS, Brinkman RR. Data standards for flow cytometry. Omics : a Journal of Integrative Biology. 10: 209-14. PMID 16901228 DOI: 10.1089/omi.2006.10.209  0.76
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