Morgan Langille - Related publications

Affiliations: 
2009-2011 University of California, Davis, Davis, CA 
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2020 Petit RA, Read TD. Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes. Msystems. 5. PMID 32753501 DOI: 10.1128/mSystems.00190-20   
2020 Feng Y, Fan X, Zhu L, Yang X, Liu Y, Gao S, Jin X, Liu D, Ding J, Guo Y, Hu Y. Phylogenetic and genomic analysis reveals high genomic openness and genetic diversity of . Microbial Genomics. PMID 32975504 DOI: 10.1099/mgen.0.000441   
2020 Yin Z, Zhang S, Wei Y, Wang M, Ma S, Yang S, Wang J, Yuan C, Jiang L, Du Y. Horizontal Gene Transfer Clarifies Taxonomic Confusion and Promotes the Genetic Diversity and Pathogenicity of Plesiomonas shigelloides. Msystems. 5. PMID 32934114 DOI: 10.1128/mSystems.00448-20   
2020 Thielen PM, Pendleton AL, Player RA, Bowden KV, Lawton TJ, Wisecaver JH. Reference Genome for the Highly Transformable ME034V. G3 (Bethesda, Md.). PMID 32694197 DOI: 10.1534/g3.120.401345   
2020 Liu X, Li B, Yang Y, Cai J, Shi T, Zheng X, Huang G. Pathogenic Adaptations Revealed by Comparative Genome Analyses of Two spp., the Causal Agent of Anthracnose in Rubber Tree. Frontiers in Microbiology. 11: 1484. PMID 32793128 DOI: 10.3389/fmicb.2020.01484   
2020 DuPai CD, Wilke CO, Davies BW. A Comprehensive Coexpression Network Analysis in Vibrio cholerae. Msystems. 5. PMID 32636337 DOI: 10.1128/mSystems.00550-20   
2020 Xu S, Cheng J, Meng X, Xu Y, Mu Y. Complete Genome and Comparative Genome Analysis of YSJL-12, a Potential Probiotics Strain Isolated From Healthy Sow Fresh Feces. Evolutionary Bioinformatics Online. 16: 1176934320942192. PMID 32782425 DOI: 10.1177/1176934320942192   
2020 Liu Z, Feng J, Yu B, Ma Q, Liu B. The functional determinants in the organization of bacterial genomes. Briefings in Bioinformatics. PMID 32793986 DOI: 10.1093/bib/bbaa172   
2020 Rousset F, Bikard D. CRISPR screens in the era of microbiomes. Current Opinion in Microbiology. 57: 70-77. PMID 32858412 DOI: 10.1016/j.mib.2020.07.009   
2020 Kumar R, Bröms JE, Sjöstedt A. Exploring the Diversity Within the Genus - An Integrated Pan-Genome and Genome-Mining Approach. Frontiers in Microbiology. 11: 1928. PMID 32849479 DOI: 10.3389/fmicb.2020.01928   
2020 Lado S, Elbers JP, Rogers MF, Melo-Ferreira J, Yadamsuren A, Corander J, Horin P, Burger PA. Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies. Bmc Genomics. 21: 606. PMID 32883205 DOI: 10.1186/s12864-020-06990-4   
2020 Frioux C, Singh D, Korcsmaros T, Hildebrand F. From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes. Computational and Structural Biotechnology Journal. 18: 1722-1734. PMID 32670511 DOI: 10.1016/j.csbj.2020.06.028   
2020 Moreira DA, Lamarca AP, Soares RF, Coelho AMA, Furtado C, Scherer NM, Moreira MAM, Seuánez HN, Boroni M. Transcriptome of the Southern Muriqui (Primates:Platyrrhini), a Critically Endangered New World Monkey: Evidence of Adaptive Evolution. Frontiers in Genetics. 11: 831. PMID 32849820 DOI: 10.3389/fgene.2020.00831   
2020 Kostas J, Parker KC. Using Matrix-Assisted Laser Desorption/Ionization Time of Flight Spectra To Elucidate Species Boundaries by Matching to Translated DNA Databases. Journal of the American Society For Mass Spectrometry. 31: 73-84. PMID 32881510 DOI: 10.1021/jasms.9b00031   
2020 Kostas J, Parker KC. Using Matrix-Assisted Laser Desorption/Ionization Time of Flight Spectra To Elucidate Species Boundaries by Matching to Translated DNA Databases. Journal of the American Society For Mass Spectrometry. 31: 73-84. PMID 32881510 DOI: 10.1021/jasms.9b00031   
2020 Fokkens L, Guo L, Dora S, Wang B, Ye K, Sánchez-Rodríguez C, Croll D. A Chromosome-Scale Genome Assembly for the Strain Fo5176 To Establish a Model -Fungal Pathosystem. G3 (Bethesda, Md.). PMID 32843521 DOI: 10.1534/g3.120.401375   
2020 Yang M, Zabed HM, Yun J, Zhang G, Qi X. The Draft Genome Sequence of Clostridium butyricum QXYZ514, a Potent Bacterium for Converting Glycerol into Fuels and Bioproducts in the Waste-Based Biorefinery. Current Microbiology. PMID 32902703 DOI: 10.1007/s00284-020-02182-1   
2020 Seabolt E, Nayar G, Krishnareddy H, Agarwal A, Beck KL, Kandogan E, Kuntomi M, Roth M, Terrizzano I, Kaufman J, Mukherjee V. IBM Functional Genomics Platform, A Cloud-Based Platform for Studying Microbial Life at Scale. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32877338 DOI: 10.1109/TCBB.2020.3021231   
2020 Saary P, Mitchell AL, Finn RD. Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC. Genome Biology. 21: 244. PMID 32912302 DOI: 10.1186/s13059-020-02155-4   
2020 Kenshole E, Herisse M, Michael M, Pidot SJ. Natural product discovery through microbial genome mining. Current Opinion in Chemical Biology. 60: 47-54. PMID 32853968 DOI: 10.1016/j.cbpa.2020.07.010   
2020 Frentrup M, Zhou Z, Steglich M, Meier-Kolthoff JP, Göker M, Riedel T, Bunk B, Spröer C, Overmann J, Blaschitz M, Indra A, von Müller L, Kohl TA, Niemann S, Seyboldt C, et al. A publicly accessible database for genome sequences supports tracing of transmission chains and epidemics. Microbial Genomics. PMID 32726198 DOI: 10.1099/mgen.0.000410   
2020 Girard L, Lood C, Rokni-Zadeh H, van Noort V, Lavigne R, De Mot R. Reliable Identification of Environmental Isolates Using the Gene. Microorganisms. 8. PMID 32752051 DOI: 10.3390/microorganisms8081166   
2020 Pincus NB, Ozer EA, Allen JP, Nguyen M, Davis JJ, Winter DR, Chuang CH, Chiu CH, Zamorano L, Oliver A, Hauser AR. A Genome-Based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates. Mbio. 11. PMID 32843552 DOI: 10.1128/mBio.01527-20   
2020 Duarte CM, Ngugi DK, Alam I, Pearman J, Kamau A, Eguiluz VM, Gojobori T, Acinas SG, Gasol JM, Bajic V, Irigoien X. Sequencing Effort Dictates Gene Discovery in Marine Microbial Metagenomes. Environmental Microbiology. PMID 32743860 DOI: 10.1111/1462-2920.15182   
2020 Rodrigues LS, Gazara RK, Passarelli-Araujo H, Valengo AE, Pontes PVM, Nunes-da-Fonseca R, de Souza RF, Venancio TM, Dalla-Costa LM. First Genome Sequences of Two Multidrug-Resistant var. Isolates From Pediatric Patients With Candidemia. Frontiers in Microbiology. 11: 1535. PMID 32719671 DOI: 10.3389/fmicb.2020.01535   
2020 Priest SJ, Yadav V, Heitman J. Advances in understanding the evolution of fungal genome architecture. F1000research. 9. PMID 32765832 DOI: 10.12688/f1000research.25424.1   
2020 Vizueta J, Escuer P, Sánchez-Gracia A, Rozas J. Genome mining and sequence analysis of chemosensory soluble proteins in arthropods. Methods in Enzymology. 642: 1-20. PMID 32828248 DOI: 10.1016/bs.mie.2020.05.015   
2020 Araújo CL, Blanco I, Souza L, Tiwari S, Pereira LC, Ghosh P, Azevedo V, Silva A, Folador A. In silico functional prediction of hypothetical proteins from the core genome of biovar . Peerj. 8: e9643. PMID 32913672 DOI: 10.7717/peerj.9643   
2020 Zhang F, Wang T, Shu X, Wang N, Zhuang W, Wang Z. Complete Chloroplast Genomes and Comparative Analyses of , , and (Amaryllidaceae). International Journal of Molecular Sciences. 21. PMID 32785156 DOI: 10.3390/ijms21165729   
2020 Yang Q, Bi H, Yang W, Li T, Jiang J, Zhang L, Liu J, Hu Q. The Genome Sequence of Alpine Identifies Species-Specific Whole-Genome Duplication. Frontiers in Genetics. 11: 812. PMID 32849811 DOI: 10.3389/fgene.2020.00812   
2020 Brashear AM, Huckaby AC, Fan Q, Dillard LJ, Hu Y, Li Y, Zhao Y, Wang Z, Cao Y, Miao J, Guler JL, Cui L. New Genomes From the China-Myanmar Border. Frontiers in Microbiology. 11: 1930. PMID 32849480 DOI: 10.3389/fmicb.2020.01930   
2020 Smith ML, Hahn MW. New Approaches for Inferring Phylogenies in the Presence of Paralogs. Trends in Genetics : Tig. PMID 32921510 DOI: 10.1016/j.tig.2020.08.012   
2020 Hwang CY, Cho Y, Jang GI, Cho BC, Hardies SC. Complete Genome Sequence of Phage ϕGT1, Isolated from a Tidal Flat. Microbiology Resource Announcements. 9. PMID 32817157 DOI: 10.1128/MRA.00779-20   
2020 Ravanelli A, Meer E, Terry J, Ji Q, Ashworth R, Chittur S. New Strategies for Forward Genetic Screening and Single Cell Analysis with CRISPRi Transcriptional Repressors. Journal of Biomolecular Techniques : Jbt. 31: S26-S27. PMID 32831739   
2020 Liu T, Zhu L, Zhu Z, Jiang L. Genome Sequence Analysis of Clostridium tyrobutyricum, a Promising Microbial Host for Human Health and Industrial Applications. Current Microbiology. PMID 32888044 DOI: 10.1007/s00284-020-02175-0   
2020 Wasai-Hara S, Minamisawa K, Cloutier S, Bromfield ESP. Strains of sp. nov., isolated from contrasting habitats in Japan and Canada possess photosynthesis gene clusters with the hallmark of genomic islands. International Journal of Systematic and Evolutionary Microbiology. PMID 32804606 DOI: 10.1099/ijsem.0.004380   
2020 Naorem RS, Urban P, Goswami G, Fekete C. Characterization of methicillin-resistant through genomics approach. 3 Biotech. 10: 401. PMID 32864286 DOI: 10.1007/s13205-020-02387-y   
2020 Grosjean N, Blaby-Haas CE. Leveraging computational genomics to understand the molecular basis of metal homeostasis. The New Phytologist. PMID 32696981 DOI: 10.1111/nph.16820   
2020 Hyde CJ, Fitzgibbon QP, Elizur A, Smith GG, Ventura T. CrustyBase: an interactive online database for crustacean transcriptomes. Bmc Genomics. 21: 637. PMID 32928113 DOI: 10.1186/s12864-020-07063-2   
2020 Sasada R, Gonzalez A, Weinstein M, Tang S. Evaluation and Optimization of Sample Processing and Bioinformatics Analysis for Long-Read Metagenomic Sequencing. Journal of Biomolecular Techniques : Jbt. 31: S31. PMID 32831754   
2020 Grillová L, Picardeau M. Core Genome Multi-locus Sequence Typing Analyses of Leptospira spp. Using the Bacterial Isolate Genome Sequence Database. Methods in Molecular Biology (Clifton, N.J.). 2134: 11-21. PMID 32632855 DOI: 10.1007/978-1-0716-0459-5_2   
2020 Kayansamruaj P, Soontara C, Dong HT, Phiwsaiya K, Senapin S. Draft genome sequence of scale drop disease virus (SDDV) retrieved from metagenomic investigation of infected barramundi, Lates calcarifer (Bloch, 1790). Journal of Fish Diseases. PMID 32829517 DOI: 10.1111/jfd.13240   
2020 Mahood EH, Kruse LH, Moghe GD. Machine learning: A powerful tool for gene function prediction in plants. Applications in Plant Sciences. 8: e11376. PMID 32765975 DOI: 10.1002/aps3.11376   
2020 Kim M, Cha IT, Lee KE, Lee EY, Park SJ. Genomics Reveals the Metabolic Potential and Functions in the Redistribution of Dissolved Organic Matter in Marine Environments of the Genus . Microorganisms. 8. PMID 32937826 DOI: 10.3390/microorganisms8091412   
2020 Chen T, Meng D, Liu X, Cheng X, Wang H, Jin Q, Xu X, Cao Y, Cai Y. RIGD: A Database for Intronless Genes in the Rosaceae. Frontiers in Genetics. 11: 868. PMID 32849839 DOI: 10.3389/fgene.2020.00868   
2020 Lim Y, Kang I, Cho JC. Genome characteristics of Kordia antarctica IMCC3317 and comparative genome analysis of the genus Kordia. Scientific Reports. 10: 14715. PMID 32895436 DOI: 10.1038/s41598-020-71328-9   
2020 Zhang Z, Wang J, Wang J, Wang J, Li Y. Estimate of the sequenced proportion of the global prokaryotic genome. Microbiome. 8: 134. PMID 32938501 DOI: 10.1186/s40168-020-00903-z   
2020 Yue J, Liu J, Tang W, Wu YQ, Tang X, Li W, Yang Y, Wang L, Huang S, Fang C, Zhao K, Fei Z, Liu Y, Zheng Y. Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics. Horticulture Research. 7: 117. PMID 32821400 DOI: 10.1038/s41438-020-0338-9   
2020 Perlaza-Jiménez L, Wu Q, Torres VVL, Zhang X, Li J, Rocker A, Lithgow T, Zhou T, Vijaykrishna D. Forensic genomics of a novel type from a neonatal intensive care unit in China reveals patterns of colonization, evolution and epidemiology. Microbial Genomics. PMID 32931409 DOI: 10.1099/mgen.0.000433   
2020 Han Z, Xiao J, Song Y, Hong M, Dai G, Lu H, Zhang M, Liang Y, Yan D, Zhu S, Xu W, Zhang Y. The Husavirus Posa-Like Viruses in China, and a New Group of . Viruses. 12. PMID 32906743 DOI: 10.3390/v12090995