Amit Zeisel - Publications

Karolinska Institute, Stockholm, Sweden 

23/39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Codeluppi S, Borm LE, Zeisel A, La Manno G, van Lunteren JA, Svensson CI, Linnarsson S. Spatial organization of the somatosensory cortex revealed by osmFISH. Nature Methods. 15: 932-935. PMID 30377364 DOI: 10.1038/S41592-018-0175-Z  0.68
2018 Muñoz-Manchado AB, Bengtsson Gonzales C, Zeisel A, Munguba H, Bekkouche B, Skene NG, Lönnerberg P, Ryge J, Harris KD, Linnarsson S, Hjerling-Leffler J. Diversity of Interneurons in the Dorsal Striatum Revealed by Single-Cell RNA Sequencing and PatchSeq. Cell Reports. 24: 2179-2190.e7. PMID 30134177 DOI: 10.1016/J.Celrep.2018.07.053  0.68
2018 Zeisel A, Hochgerner H, Lönnerberg P, Johnsson A, Memic F, van der Zwan J, Häring M, Braun E, Borm LE, La Manno G, Codeluppi S, Furlan A, Lee K, Skene N, Harris KD, et al. Molecular Architecture of the Mouse Nervous System. Cell. 174: 999-1014.e22. PMID 30096314 DOI: 10.1016/J.Cell.2018.06.021  0.68
2018 La Manno G, Soldatov R, Zeisel A, Braun E, Hochgerner H, Petukhov V, Lidschreiber K, Kastriti ME, Lönnerberg P, Furlan A, Fan J, Borm LE, Liu Z, van Bruggen D, Guo J, et al. RNA velocity of single cells. Nature. PMID 30089906 DOI: 10.1038/S41586-018-0414-6  0.68
2018 Häring M, Zeisel A, Hochgerner H, Rinwa P, Jakobsson JET, Lönnerberg P, La Manno G, Sharma N, Borgius L, Kiehn O, Lagerström MC, Linnarsson S, Ernfors P. Neuronal atlas of the dorsal horn defines its architecture and links sensory input to transcriptional cell types. Nature Neuroscience. PMID 29686262 DOI: 10.1038/S41593-018-0141-1  0.68
2018 Hochgerner H, Zeisel A, Lönnerberg P, Linnarsson S. Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing. Nature Neuroscience. PMID 29335606 DOI: 10.1038/S41593-017-0056-2  0.68
2017 Hochgerner H, Lönnerberg P, Hodge R, Mikes J, Heskol A, Hubschle H, Lin P, Picelli S, La Manno G, Ratz M, Dunne J, Husain S, Lein E, Srinivasan M, Zeisel A, et al. STRT-seq-2i: dual-index 5' single cell and nucleus RNA-seq on an addressable microwell array. Scientific Reports. 7: 16327. PMID 29180631 DOI: 10.1038/S41598-017-16546-4  0.68
2016 Romanov RA, Zeisel A, Bakker J, Girach F, Hellysaz A, Tomer R, Alpár A, Mulder J, Clotman F, Keimpema E, Hsueh B, Crow AK, Martens H, Schwindling C, Calvigioni D, et al. Molecular interrogation of hypothalamic organization reveals distinct dopamine neuronal subtypes. Nature Neuroscience. PMID 27991900 DOI: 10.1038/Nn.4462  0.56
2016 La Manno G, Gyllborg D, Codeluppi S, Nishimura K, Salto C, Zeisel A, Borm LE, Stott SR, Toledo EM, Villaescusa JC, Lönnerberg P, Ryge J, Barker RA, Arenas E, Linnarsson S. Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells. Cell. 167: 566-580.e19. PMID 27716510 DOI: 10.1016/J.Cell.2016.09.027  0.68
2016 Joost S, Zeisel A, Jacob T, Sun X, La Manno G, Lönnerberg P, Linnarsson S, Kasper M. Single-Cell Transcriptomics Reveals that Differentiation and Spatial Signatures Shape Epidermal and Hair Follicle Heterogeneity. Cell Systems. PMID 27641957 DOI: 10.1016/J.Cels.2016.08.010  0.68
2016 Marques S, Zeisel A, Codeluppi S, van Bruggen D, Mendanha Falcão A, Xiao L, Li H, Häring M, Hochgerner H, Romanov RA, Gyllborg D, Muñoz-Manchado AB, La Manno G, Lönnerberg P, Floriddia EM, et al. Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system. Science (New York, N.Y.). 352: 1326-9. PMID 27284195 DOI: 10.1126/Science.Aaf6463  0.68
2015 Fuzik J, Zeisel A, Máté Z, Calvigioni D, Yanagawa Y, Szabó G, Linnarsson S, Harkany T. Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes. Nature Biotechnology. PMID 26689544 DOI: 10.1038/Nbt.3443  0.56
2015 Zeisel A, Muñoz-Manchado AB, Codeluppi S, Lönnerberg P, La Manno G, Juréus A, Marques S, Munguba H, He L, Betsholtz C, Rolny C, Castelo-Branco G, Hjerling-Leffler J, Linnarsson S. Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq. Science (New York, N.Y.). 347: 1138-42. PMID 25700174 DOI: 10.1126/Science.Aaa1934  0.48
2015 Cohen-Dvashi H, Ben-Chetrit N, Russell R, Carvalho S, Lauriola M, Nisani S, Mancini M, Nataraj N, Kedmi M, Roth L, Köstler W, Zeisel A, Yitzhaky A, Zylberg J, Tarcic G, et al. Navigator-3, a modulator of cell migration, may act as a suppressor of breast cancer progression. Embo Molecular Medicine. 7: 299-314. PMID 25678558 DOI: 10.15252/Emmm.201404134  0.48
2015 Romanov RA, Alpár A, Zhang MD, Zeisel A, Calas A, Landry M, Fuszard M, Shirran SL, Schnell R, Dobolyi Á, Oláh M, Spence L, Mulder J, Martens H, Palkovits M, et al. A secretagogin locus of the mammalian hypothalamus controls stress hormone release. The Embo Journal. 34: 36-54. PMID 25430741 DOI: 10.15252/Embj.201488977  0.48
2014 Ziv O, Zeisel A, Mirlas-Neisberg N, Swain U, Nevo R, Ben-Chetrit N, Martelli MP, Rossi R, Schiesser S, Canman CE, Carell T, Geacintov NE, Falini B, Domany E, Livneh Z. Identification of novel DNA-damage tolerance genes reveals regulation of translesion DNA synthesis by nucleophosmin. Nature Communications. 5: 5437. PMID 25421715 DOI: 10.1038/Ncomms6437  0.48
2014 Lauriola M, Enuka Y, Zeisel A, D'Uva G, Roth L, Sharon-Sevilla M, Lindzen M, Sharma K, Nevo N, Feldman M, Carvalho S, Cohen-Dvashi H, Kedmi M, Ben-Chetrit N, Chen A, et al. Diurnal suppression of EGFR signalling by glucocorticoids and implications for tumour progression and treatment. Nature Communications. 5: 5073. PMID 25278152 DOI: 10.1038/Ncomms6073  0.48
2014 Plaks V, Gershon E, Zeisel A, Jacob-Hirsch J, Neeman M, Winterhager E, Rechavi G, Domany E, Dekel N. Blastocyst implantation failure relates to impaired translational machinery gene expression Reproduction. 148: 87-98. PMID 24700326 DOI: 10.1530/Rep-13-0395  0.48
2014 Islam S, Zeisel A, Joost S, La Manno G, Zajac P, Kasper M, Lönnerberg P, Linnarsson S. Quantitative single-cell RNA-seq with unique molecular identifiers. Nature Methods. 11: 163-6. PMID 24363023 DOI: 10.1038/Nmeth.2772  0.48
2013 Amir A, Zeisel A, Zuk O, Elgart M, Stern S, Shamir O, Turnbaugh PJ, Soen Y, Shental N. High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions. Nucleic Acids Research. 41: e205. PMID 24214960 DOI: 10.1093/Nar/Gkt1070  0.48
2013 Zuk O, Amir A, Zeisel A, Shamir O, Shental N. Accurate profiling of microbial communities from massively parallel sequencing using convex optimization Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8214: 279-297. DOI: 10.1007/978-3-319-02432-5_31  0.48
2010 Tirosh-Finkel L, Zeisel A, Brodt-Ivenshitz M, Shamai A, Yao Z, Seger R, Domany E, Tzahor E. BMP-mediated inhibition of FGF signaling promotes cardiomyocyte differentiation of anterior heart field progenitors. Development (Cambridge, England). 137: 2989-3000. PMID 20702560 DOI: 10.1242/Jcs.079764  0.48
2010 Avraham R, Sas-Chen A, Manor O, Steinfeld I, Shalgi R, Tarcic G, Bossel N, Zeisel A, Amit I, Zwang Y, Enerly E, Russnes HG, Biagioni F, Mottolese M, Strano S, et al. EGF decreases the abundance of microRNAs that restrain oncogenic transcription factors. Science Signaling. 3: ra43. PMID 20516477 DOI: 10.1126/Scisignal.2000876  0.48
Low-probability matches
2018 Fuks G, Elgart M, Amir A, Zeisel A, Turnbaugh PJ, Soen Y, Shental N. Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling. Microbiome. 6: 17. PMID 29373999 DOI: 10.1186/S40168-017-0396-X  0.01
2017 Golan-Lavi R, Giacomelli C, Fuks G, Zeisel A, Sonntag J, Sinha S, Köstler W, Wiemann S, Korf U, Yarden Y, Domany E. Coordinated Pulses of mRNA and of Protein Translation or Degradation Produce EGF-Induced Protein Bursts. Cell Reports. 18: 3129-3142. PMID 28355565 DOI: 10.1016/J.Celrep.2017.03.014  0.01
2014 Fridmann-Sirkis Y, Stern S, Elgart M, Galili M, Zeisel A, Shental N, Soen Y. Delayed development induced by toxicity to the host can be inherited by a bacterial-dependent, transgenerational effect. Frontiers in Genetics. 5: 27. PMID 24611070 DOI: 10.3389/Fgene.2014.00027  0.01
2013 Köstler WJ, Zeisel A, Körner C, Tsai JM, Jacob-Hirsch J, Ben-Chetrit N, Sharma K, Cohen-Dvashi H, Yitzhaky A, Lader E, Tschulena U, Rechavi G, Domany E, Wiemann S, Yarden Y. Epidermal growth-factor-induced transcript isoform variation drives mammary cell migration. Plos One. 8: e80566. PMID 24324612 DOI: 10.1371/Journal.Pone.0080566  0.01
2013 Zeisel A, Yitzhaky A, Bossel Ben-Moshe N, Domany E. An accessible database for mouse and human whole transcriptome qPCR primers. Bioinformatics (Oxford, England). 29: 1355-6. PMID 23539303 DOI: 10.1093/Bioinformatics/Btt145  0.01
2013 Zeisel A, Yitzhaky A, Koerner C, Lauriola M, Cohen-Dvashi H, Köstler WJ, Yarden Y, Wiemann S, Domany E. qCMA: a desktop application for quantitative collective cell migration analysis. Journal of Biomolecular Screening. 18: 356-60. PMID 23042078 DOI: 10.1177/1087057112461940  0.01
2012 Bossel Ben-Moshe N, Avraham R, Kedmi M, Zeisel A, Yitzhaky A, Yarden Y, Domany E. Context-specific microRNA analysis: identification of functional microRNAs and their mRNA targets. Nucleic Acids Research. 40: 10614-27. PMID 22977182 DOI: 10.1093/Nar/Gks841  0.01
2011 Zeisel A, Köstler WJ, Molotski N, Tsai JM, Krauthgamer R, Jacob-Hirsch J, Rechavi G, Soen Y, Jung S, Yarden Y, Domany E. Coupled pre-mRNA and mRNA dynamics unveil operational strategies underlying transcriptional responses to stimuli. Molecular Systems Biology. 7: 529. PMID 21915116 DOI: 10.1038/Msb.2011.62  0.01
2011 Zeisel A, Zuk O, Domany E. FDR control with adaptive procedures and FDR monotonicity The Annals of Applied Statistics. 5: 943-968. DOI: 10.1214/10-Aoas399  0.01
2010 Zeisel A, Amir A, Köstler WJ, Domany E. Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes. Bmc Bioinformatics. 11: 400. PMID 20663218 DOI: 10.1186/1471-2105-11-400  0.01
2009 Zeisel A, Plaks V, Gershon E, Winterhager E, Neeman M, Domany E, Dekel N. Implantation disorder related to impaired translation in the oocyte and in the resulting embryo Developmental Biology. 331: 419. DOI: 10.1016/J.Ydbio.2009.05.114  0.01
2017 Morarach K, Memic F, Zeisel A, Hochgerner H, Marklund U, Linnarsson S. Single-cell molecular interrogation of enteric nervous system development Mechanisms of Development. 145: S67. DOI: 10.1016/J.Mod.2017.04.151  0
2015 Lauriola M, Enuka Y, Zeisel A, D'Uva G, Roth L, Carvalho S, Solmi R, Domany E, Yarden Y. Abstract 3475: Diurnal suppression of EGFR signaling by glucocorticoids: implications for tumor progression and treatment Cancer Research. 75: 3475-3475. DOI: 10.1158/1538-7445.Am2015-3475  0
2012 Pradeep CR, Zeisel A, Köstler WJ, Lauriola M, Jacob-Hirsch J, Haibe-Kains B, Amariglio N, Ben-Chetrit N, Emde A, Solomonov I, Neufeld G, Piccart M, Sagi I, Sotiriou C, Rechavi G, et al. Modeling invasive breast cancer: Growth factors propel progression of HER2-positive premalignant lesions Oncogene. 31: 3569-3583. PMID 22139081 DOI: 10.1038/Onc.2011.547  0
2009 Chaluvally-Raghavan P, Zeisel A, Koestler W, Jacob-Hirsch J, Rechavi G, Domany E, Yarden Y. HER2-Associated Breast Cancer Signature Using a 3D Culture Model. Cancer Research. 69: 4146-4146. DOI: 10.1158/0008-5472.Sabcs-09-4146  0
2008 Zeisel A, Stiassnie M, Agnon Y. Viscous effects on wave generation by strong winds Journal of Fluid Mechanics. 597: 343-369. DOI: 10.1017/S0022112007009858  0
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