☰

Roberto Marabini - Publications

Affiliations: 
1990-1997 Macromolecular structure Natl. Center of Biotechnology (CSIC) 
 1997-2000 University of Pennsylvania, Philadelphia, PA, United States 
 2000-2001 City University of New York, New York, NY, United States 
 2001- Computer science Univ. Autónoma de Madrid 
Area:
Electron Microscopy; Single Particle Analysis; Image Processing
Website:
http://afrodita.ii.uam.es/esp/personal/ficha.php?empid=103
Tree Info Similar researchers PubMed Report error

88 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Strelak D, Jiménez-Moreno A, Vilas JL, Ramírez-Aportela E, Sánchez-García R, Maluenda D, Vargas J, Herreros D, Fernández-Giménez E, de Isidro-Gómez FP, Horacek J, Myska D, Horacek M, Conesa P, Fonseca-Reyna YC, ... ... Marabini R, et al. Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion. Molecules (Basel, Switzerland). 26. PMID 34684805 DOI: 10.3390/molecules26206224  0.807
2021 Sorzano COS, Jiménez-Moreno A, Maluenda D, Ramírez-Aportela E, Martínez M, Cuervo A, Melero R, Conesa JJ, Sánchez-García R, Strelak D, Filipovic J, Fernández-Giménez E, de Isidro-Gómez F, Herreros D, Conesa P, ... ... Marabini R, et al. Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods. Methods in Molecular Biology (Clifton, N.J.). 2305: 257-289. PMID 33950394 DOI: 10.1007/978-1-0716-1406-8_13  0.841
2021 Marabini R, Condezo GN, Krupovic M, Menéndez-Conejero R, Gómez-Blanco J, San Martín C. Near-atomic structure of an atadenovirus reveals a conserved capsid-binding motif and intergenera variations in cementing proteins. Science Advances. 7. PMID 33789897 DOI: 10.1126/sciadv.abe6008  0.664
2021 Pérez-Illana M, Martínez M, Condezo GN, Hernando-Pérez M, Mangroo C, Brown M, Marabini R, San Martín C. Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses. Science Advances. 7. PMID 33627423 DOI: 10.1126/sciadv.abd9421  0.75
2021 Ramírez-Aportela E, Maluenda D, Fonseca YC, Conesa P, Marabini R, Heymann JB, Carazo JM, Sorzano COS. FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation. Nature Communications. 12: 42. PMID 33397925 DOI: 10.1038/s41467-020-20295-w  0.798
2020 Melero R, Sorzano COS, Foster B, Vilas JL, Martínez M, Marabini R, Ramírez-Aportela E, Sanchez-Garcia R, Herreros D, Del Caño L, Losana P, Fonseca-Reyna YC, Conesa P, Wrapp D, Chacon P, et al. Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures. Iucrj. 7. PMID 33063791 DOI: 10.1107/S2052252520012725  0.773
2020 Melero R, Sorzano COS, Foster B, Vilas JL, Martínez M, Marabini R, Ramírez-Aportela E, Sanchez-Garcia R, Herreros D, Del Caño L, Losana P, Fonseca-Reyna YC, Conesa P, Wrapp D, Chacon P, et al. Continuous flexibility analysis of SARS-CoV-2 Spike prefusion structures. Biorxiv : the Preprint Server For Biology. PMID 32676604 DOI: 10.1101/2020.07.08.191072  0.777
2020 Vilas JL, Oton J, Messaoudi C, Melero R, Conesa P, Ramirez-Aportela E, Mota J, Martinez M, Jimenez A, Marabini R, Carazo JM, Vargas J, Sorzano COS. Measurement of local resolution in electron tomography. Journal of Structural Biology: X. 4: 100016. PMID 32647820 DOI: 10.1016/j.yjsbx.2019.100016  0.81
2020 Martínez M, Jiménez-Moreno A, Maluenda D, Ramírez-Aportela E, Melero R, Cuervo A, Conesa P, Del Caño L, Fonseca YC, Sánchez-García R, Strelak D, Conesa JJ, Fernández-Giménez E, de Isidro F, Sorzano COS, ... ... Marabini R, et al. Integration of Cryo-EM Model Building Software in Scipion. Journal of Chemical Information and Modeling. PMID 31994878 DOI: 10.1021/Acs.Jcim.9B01032  0.827
2020 Vilas JL, Vargas J, Martinez M, Ramirez-Aportela E, Melero R, Jimenez-Moreno A, Garduño E, Conesa P, Marabini R, Maluenda D, Carazo JM, Sorzano COS. Re-examining the spectra of macromolecules. Current practice of spectral quasi B-factor flattening. Journal of Structural Biology. 107447. PMID 31911170 DOI: 10.1016/J.Jsb.2020.107447  0.799
2019 Maluenda D, Majtner T, Horvath P, Vilas JL, Jiménez-Moreno A, Mota J, Ramírez-Aportela E, Sánchez-García R, Conesa P, Del Caño L, Rancel Y, Fonseca Y, Martínez M, Sharov G, García CA, ... ... Marabini R, et al. Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion. Acta Crystallographica. Section D, Structural Biology. 75: 882-894. PMID 31588920 DOI: 10.1107/S2059798319011860  0.838
2019 Ramírez-Aportela E, Vilas JL, Glukhova A, Melero R, Conesa P, Martínez M, Maluenda D, Mota J, Jiménez A, Vargas J, Marabini R, Sexton PM, Carazo JM, Oscar C, Sorzano S. Automatic local resolution-based sharpening of cryo-EM maps. Bioinformatics (Oxford, England). PMID 31504163 DOI: 10.1093/Bioinformatics/Btz671  0.79
2019 Sorzano COS, Jiménez A, Mota J, Vilas JL, Maluenda D, Martínez M, Ramírez-Aportela E, Majtner T, Segura J, Sánchez-García R, Rancel Y, Del Caño L, Conesa P, Melero R, Jonic S, ... ... Marabini R, et al. Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy. Acta Crystallographica. Section F, Structural Biology Communications. 75: 19-32. PMID 30605122 DOI: 10.1107/S2053230X18015108  0.804
2018 Jiménez A, Jonic S, Majtner T, Otón J, Vilas JL, Maluenda D, Mota J, Ramírez-Aportela E, Martínez M, Rancel Y, Segura J, Sánchez-García R, Melero R, Del Cano L, Conesa P, ... ... Marabini R, et al. Validation of Electron Microscopy Initial Models via Small Angle X-Ray Scattering Curves. Bioinformatics (Oxford, England). PMID 30500892 DOI: 10.1093/Bioinformatics/Bty985  0.795
2018 Gómez-Blanco J, de la Rosa-Trevín JM, Marabini R, Del Cano L, Jiménez A, Martínez M, Melero R, Majtner T, Maluenda D, Mota J, Rancel Y, Ramírez-Aportela E, Vilas JL, Carroni M, Fleischmann S, et al. Using Scipion for Stream Image Processing at Cryo-EM Facilities. Journal of Structural Biology. PMID 30296492 DOI: 10.1016/J.Jsb.2018.10.001  0.81
2018 Marabini R, Kazemi M, Sorzano COS, Carazo JM. Map Challenge: Analysis using a Pair Comparison Method based on Fourier Shell Correlation. Journal of Structural Biology. PMID 30273658 DOI: 10.1016/J.Jsb.2018.09.009  0.702
2018 Sorzano COS, Vargas J, de la Rosa-Trevín JM, Jiménez A, Maluenda D, Melero R, Martínez M, Ramírez-Aportela E, Conesa P, Vilas JL, Marabini R, Carazo JM. A new algorithm for high-resolution reconstruction of single particles by electron microscopy. Journal of Structural Biology. PMID 30145327 DOI: 10.1016/J.Jsb.2018.08.002  0.844
2018 Heymann JB, Marabini R, Kazemi M, Sorzano COS, Holmdahl M, Mendez JH, Stagg SM, Jonic S, Palovcak E, Armache JP, Zhao J, Cheng Y, Pintilie G, Chiu W, Patwardhan A, et al. The First Single Particle Analysis Map Challenge: A Summary of the Assessments. Journal of Structural Biology. PMID 30114512 DOI: 10.1016/J.Jsb.2018.08.010  0.702
2018 Sorzano COS, Fernández-Giménez E, Peredo-Robinson V, Vargas J, Majtner T, Caffarena G, Otón J, Vilas JL, de la Rosa-Trevín JM, Melero R, Gómez-Blanco J, Cuenca J, Del Cano L, Conesa P, Marabini R, et al. Blind estimation of DED camera gain in Electron Microscopy. Journal of Structural Biology. PMID 29551714 DOI: 10.1016/J.Jsb.2018.03.007  0.832
2018 Vilas JL, Gómez-Blanco J, Conesa P, Melero R, Miguel de la Rosa-Trevín J, Otón J, Cuenca J, Marabini R, Carazo JM, Vargas J, Sorzano COS. MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps. Structure (London, England : 1993). 26: 337-344.e4. PMID 29395788 DOI: 10.1016/J.Str.2017.12.018  0.811
2018 de la Rosa-Trevín JM, Gómez-Blanco J, Conesa P, Rancel Y, del Cano L, Arranz R, Chichón FJ, Martín-Benito J, Carroni M, Fleichman S, Lindahl E, Basham M, Clare DK, Savage K, Siebert CA, ... ... Marabini R, et al. Using Scipion for stream image processing at cryo-EM facilities Acta Crystallographica Section a Foundations and Advances. 74: a161-a161. DOI: 10.1107/S0108767318098380  0.706
2017 Sorzano COS, Vargas J, Otón J, de la Rosa-Trevín JM, Vilas JL, Kazemi M, Melero R, Del Caño L, Cuenca J, Conesa P, Gómez-Blanco J, Marabini R, Carazo JM. A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy. Biomed Research International. 2017: 6482567. PMID 29312997 DOI: 10.1155/2017/6482567  0.824
2017 Cuenca-Alba J, Del Cano L, Gómez Blanco J, de la Rosa Trevín JM, Conesa Mingo P, Marabini R, S Sorzano CO, Carazo JM. ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds. Journal of Structural Biology. 200: 20-27. PMID 28658599 DOI: 10.1016/J.Jsb.2017.06.004  0.794
2017 Otón J, Pereiro E, Conesa JJ, Chichón FJ, Luque D, Rodríguez JM, Pérez-Berná AJ, Sorzano CO, Klukowska J, Herman GT, Vargas J, Marabini R, Carrascosa JL, Carazo JM. XTEND: Extending the depth of field in cryo soft X-ray tomography. Scientific Reports. 7: 45808. PMID 28374769 DOI: 10.1038/Srep45808  0.804
2017 Sorzano CO, Vargas J, Otón J, Abrishami V, de la Rosa-Trevín JM, Gómez-Blanco J, Vilas JL, Marabini R, Carazo JM. A review of resolution measures and related aspects in 3D Electron Microscopy. Progress in Biophysics and Molecular Biology. 124: 1-30. PMID 27666962 DOI: 10.1016/J.Pbiomolbio.2016.09.005  0.809
2016 Otón J, Pereiro E, Pérez-Berná AJ, Millach L, Sorzano CO, Marabini R, Carazo JM. Characterization of transfer function, resolution and depth of field of a soft X-ray microscope applied to tomography enhancement by Wiener deconvolution. Biomedical Optics Express. 7: 5092-5103. PMID 28018727 DOI: 10.1364/Boe.7.005092  0.819
2016 Vilas JL, Navas J, Gómez-Blanco J, de la Rosa-Trevín JM, Melero R, Peschiera I, Ferlenghi I, Cuenca J, Marabini R, Carazo JM, Vargas J, Sorzano COS. Fast and automatic identification of particle tilt pairs based on Delaunay triangulation. Journal of Structural Biology. 196: 525-533. PMID 27769763 DOI: 10.1016/J.Jsb.2016.10.007  0.826
2016 de la Rosa-Trevín JM, Quintana A, Del Cano L, Zaldívar A, Foche I, Gutiérrez J, Gómez-Blanco J, Burguet-Castell J, Cuenca-Alba J, Abrishami V, Vargas J, Otón J, Sharov G, Vilas JL, Navas J, ... ... Marabini R, et al. Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy. Journal of Structural Biology. 195: 93-9. PMID 27108186 DOI: 10.1016/J.Jsb.2016.04.010  0.815
2016 Sorzano CO, Martín-Ramos A, Prieto F, Melero R, Martín-Benito J, Jonic S, Navas-Calvente J, Vargas J, Otón J, Abrishami V, de la Rosa-Trevín JM, Gómez-Blanco J, Vilas JL, Marabini R, Carazo JM. Local analysis of strains and rotations for macromolecular electron microscopy maps. Journal of Structural Biology. 195: 123-8. PMID 27102900 DOI: 10.1016/J.Jsb.2016.04.001  0.797
2016 Vargas J, Otón J, Marabini R, Carazo JM, Sorzano CO. Particle alignment reliability in single particle electron cryomicroscopy: a general approach. Scientific Reports. 6: 21626. PMID 26899789 DOI: 10.1038/Srep21626  0.847
2016 Marabini R, Ludtke SJ, Murray SC, Chiu W, de la Rosa-Trevín JM, Patwardhan A, Heymann JB, Carazo JM. The Electron Microscopy eXchange (EMX) initiative. Journal of Structural Biology. 194: 156-63. PMID 26873784 DOI: 10.1016/J.Jsb.2016.02.008  0.843
2016 Iriarte A, Marabini R, Matej S, Sorzano CO, Lewitt RM. System models for PET statistical iterative reconstruction: A review. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 48: 30-48. PMID 26748039 DOI: 10.1016/J.Compmedimag.2015.12.003  0.447
2015 Sorzano CO, Alcorlo M, de la Rosa-Trevín JM, Melero R, Foche I, Zaldívar-Peraza A, del Cano L, Vargas J, Abrishami V, Otón J, Marabini R, Carazo JM. Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited. Scientific Reports. 5: 14290. PMID 26390853 DOI: 10.1038/Srep14290  0.827
2015 Condezo GN, Marabini R, Ayora S, Carazo JM, Alba R, Chillón M, San Martín C. Structures of Adenovirus Incomplete Particles Clarify Capsid Architecture and Show Maturation Changes of Packaging Protein L1 52/55k. Journal of Virology. 89: 9653-64. PMID 26178997 DOI: 10.1128/Jvi.01453-15  0.795
2015 Abrishami V, Bilbao-Castro JR, Vargas J, Marabini R, Carazo JM, Sorzano CO. A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function. Ultramicroscopy. 157: 79-87. PMID 26094203 DOI: 10.1016/J.Ultramic.2015.05.018  0.814
2015 Carazo JM, Sorzano CO, Otón J, Marabini R, Vargas J. Three-dimensional reconstruction methods in Single Particle Analysis from transmission electron microscopy data. Archives of Biochemistry and Biophysics. 581: 39-48. PMID 26008761 DOI: 10.1016/J.Abb.2015.05.003  0.814
2015 Otón J, Sorzano CO, Marabini R, Pereiro E, Carazo JM. Measurement of the modulation transfer function of an X-ray microscope based on multiple Fourier orders analysis of a Siemens star. Optics Express. 23: 9567-72. PMID 25968993 DOI: 10.1364/Oe.23.009567  0.807
2015 Marabini R, Carragher B, Chen S, Chen J, Cheng A, Downing KH, Frank J, Grassucci RA, Bernard Heymann J, Jiang W, Jonic S, Liao HY, Ludtke SJ, Patwari S, Piotrowski AL, et al. CTF Challenge: Result summary. Journal of Structural Biology. 190: 348-59. PMID 25913484 DOI: 10.1016/J.Jsb.2015.04.003  0.78
2015 Cheng A, Henderson R, Mastronarde D, Ludtke SJ, Schoenmakers RH, Short J, Marabini R, Dallakyan S, Agard D, Winn M. MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography. Journal of Structural Biology. PMID 25882513 DOI: 10.1016/J.Jsb.2015.04.002  0.455
2015 Abrishami V, Vargas J, Li X, Cheng Y, Marabini R, Sorzano CÓ, Carazo JM. Alignment of direct detection device micrographs using a robust Optical Flow approach. Journal of Structural Biology. 189: 163-76. PMID 25681631 DOI: 10.1016/J.Jsb.2015.02.001  0.796
2015 Sorzano CO, Vargas J, de la Rosa-Trevín JM, Otón J, Álvarez-Cabrera AL, Abrishami V, Sesmero E, Marabini R, Carazo JM. A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy. Journal of Structural Biology. 189: 213-9. PMID 25637660 DOI: 10.1016/J.Jsb.2015.01.009  0.814
2014 Vargas J, Álvarez-Cabrera AL, Marabini R, Carazo JM, Sorzano CO. Efficient initial volume determination from electron microscopy images of single particles. Bioinformatics (Oxford, England). 30: 2891-8. PMID 24974203 DOI: 10.1093/Bioinformatics/Btu404  0.836
2014 Fribourg PF, Chami M, Sorzano CO, Gubellini F, Marabini R, Marco S, Jault JM, Lévy D. 3D cryo-electron reconstruction of BmrA, a bacterial multidrug ABC transporter in an inward-facing conformation and in a lipidic environment. Journal of Molecular Biology. 426: 2059-69. PMID 24630999 DOI: 10.1016/J.Jmb.2014.03.002  0.316
2014 Klukowska J, Herman GT, Otón J, Marabini R, Carazo J. The soft x-ray transform Inverse Problems. 30: 125015. DOI: 10.1088/0266-5611/30/12/125015  0.784
2013 de la Rosa-Trevín JM, Otón J, Marabini R, Zaldívar A, Vargas J, Carazo JM, Sorzano CO. Xmipp 3.0: an improved software suite for image processing in electron microscopy. Journal of Structural Biology. 184: 321-8. PMID 24075951 DOI: 10.1016/J.Jsb.2013.09.015  0.834
2013 Abrishami V, Zaldívar-Peraza A, de la Rosa-Trevín JM, Vargas J, Otón J, Marabini R, Shkolnisky Y, Carazo JM, Sorzano CO. A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs. Bioinformatics (Oxford, England). 29: 2460-8. PMID 23958728 DOI: 10.1093/Bioinformatics/Btt429  0.821
2013 Vargas J, Abrishami V, Marabini R, de la Rosa-Trevín JM, Zaldivar A, Carazo JM, Sorzano COS. Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques. Journal of Structural Biology. 183: 342-353. PMID 23933392 DOI: 10.1016/J.Jsb.2013.07.015  0.808
2013 Marabini R, Macias JR, Vargas J, Quintana A, Sorzano CO, Carazo JM. On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy. Acta Crystallographica. Section D, Biological Crystallography. 69: 695-700. PMID 23633578 DOI: 10.1107/S0907444913007038  0.723
2013 Vargas J, Otón J, Marabini R, Jonic S, de la Rosa-Trevín JM, Carazo JM, Sorzano CO. FASTDEF: fast defocus and astigmatism estimation for high-throughput transmission electron microscopy. Journal of Structural Biology. 181: 136-48. PMID 23261401 DOI: 10.1016/J.Jsb.2012.12.006  0.82
2013 Sorzano CO, de la Rosa Trevín JM, Otón J, Vega JJ, Cuenca J, Zaldívar-Peraza A, Gómez-Blanco J, Vargas J, Quintana A, Marabini R, Carazo JM. Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy. Methods in Molecular Biology (Clifton, N.J.). 950: 171-93. PMID 23086876 DOI: 10.1007/978-1-62703-137-0_11  0.853
2012 Luque D, González JM, Gómez-Blanco J, Marabini R, Chichón J, Mena I, Angulo I, Carrascosa JL, Verdaguer N, Trus BL, Bárcena J, Castón JR. Epitope insertion at the N-terminal molecular switch of the rabbit hemorrhagic disease virus T = 3 capsid protein leads to larger T = 4 capsids. Journal of Virology. 86: 6470-80. PMID 22491457 DOI: 10.1128/Jvi.07050-11  0.535
2012 Oton J, Sorzano CO, Pereiro E, Cuenca-Alba J, Navarro R, Carazo JM, Marabini R. Image formation in cellular X-ray microscopy. Journal of Structural Biology. 178: 29-37. PMID 22343468 DOI: 10.1016/J.Jsb.2012.01.006  0.826
2010 Arganda-Carreras I, Sorzano CO, Thévenaz P, Muñoz-Barrutia A, Kybic J, Marabini R, Carazo JM, Ortiz-de Solorzano C. Non-rigid consistent registration of 2D image sequences. Physics in Medicine and Biology. 55: 6215-42. PMID 20885021 DOI: 10.1088/0031-9155/55/20/012  0.71
2010 Sorzano CO, Bilbao-Castro JR, Shkolnisky Y, Alcorlo M, Melero R, Caffarena-Fernández G, Li M, Xu G, Marabini R, Carazo JM. A clustering approach to multireference alignment of single-particle projections in electron microscopy. Journal of Structural Biology. 171: 197-206. PMID 20362059 DOI: 10.1016/J.Jsb.2010.03.011  0.807
2009 Pérez-Berná AJ, Marabini R, Scheres SH, Menéndez-Conejero R, Dmitriev IP, Curiel DT, Mangel WF, Flint SJ, San Martín C. Structure and uncoating of immature adenovirus. Journal of Molecular Biology. 392: 547-57. PMID 19563809 DOI: 10.1016/J.Jmb.2009.06.057  0.797
2009 Sorzano CO, Recarte E, Alcorlo M, Bilbao-Castro JR, San-Martín C, Marabini R, Carazo JM. Automatic particle selection from electron micrographs using machine learning techniques. Journal of Structural Biology. 167: 252-60. PMID 19555764 DOI: 10.1016/J.Jsb.2009.06.011  0.714
2009 Iriarte A, Sorzano CO, Carazo JM, Rubio JL, Marabini R. A theoretical model for EM-ML reconstruction algorithms applied to rotating PET scanners. Physics in Medicine and Biology. 54: 1909-34. PMID 19265206 DOI: 10.1088/0031-9155/54/7/004  0.677
2009 Bilbao-Castro JR, Marabini R, Sorzano CO, García I, Carazo JM, Fernández JJ. Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs. Journal of Structural Biology. 165: 19-26. PMID 18940260 DOI: 10.1016/J.Jsb.2008.09.009  0.762
2008 Sorzano CO, Velázquez-Muriel JA, Marabini R, Herman GT, Carazo JM. Volumetric restrictions in single particle 3DEM reconstruction. Pattern Recognition. 41: 616. PMID 20119498 DOI: 10.1016/J.Patcog.2007.06.010  0.768
2008 Scheres SH, Núñez-Ramírez R, Sorzano CO, Carazo JM, Marabini R. Image processing for electron microscopy single-particle analysis using XMIPP. Nature Protocols. 3: 977-90. PMID 18536645 DOI: 10.1038/Nprot.2008.62  0.817
2007 Fernández J, García I, Carazo J, Marabini R. Electron tomography of complex biological specimens on the Grid Future Generation Computer Systems. 23: 435-446. DOI: 10.1016/J.Future.2006.07.010  0.734
2006 Gil D, Carazo JM, Marabini R. On the nature of 2D crystal unbending. Journal of Structural Biology. 156: 546-55. PMID 16997575 DOI: 10.1016/J.Jsb.2006.07.012  0.703
2006 Fernandez J, Sorzano C, Marabini R, Carazo J. Image processing and 3-D reconstruction in electron microscopy Ieee Signal Processing Magazine. 23: 84-94. DOI: 10.1109/Msp.2006.1628881  0.456
2006 Sorzano COS, Marabini R, Pascual-Montano A, Scheres SHW, Carazo JM. Optimization problems in electron microscopy of single particles Annals of Operations Research. 148: 133-165. DOI: 10.1007/S10479-006-0078-8  0.828
2006 Carazo JM, Herman GT, Sorzano COS, Marabini R. Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy Electron Tomography: Methods For Three-Dimensional Visualization of Structures in the Cell. 217-243. DOI: 10.1007/978-0-387-69008-7_8  0.608
2005 Scheres SH, Marabini R, Lanzavecchia S, Cantele F, Rutten T, Fuller SD, Carazo JM, Burnett RM, San Martín C. Classification of single-projection reconstructions for cryo-electron microscopy data of icosahedral viruses. Journal of Structural Biology. 151: 79-91. PMID 15923127 DOI: 10.1016/J.Jsb.2005.04.003  0.822
2005 Scheres SH, Valle M, Nuñez R, Sorzano CO, Marabini R, Herman GT, Carazo JM. Maximum-likelihood multi-reference refinement for electron microscopy images. Journal of Molecular Biology. 348: 139-49. PMID 15808859 DOI: 10.1016/J.Jmb.2005.02.031  0.81
2005 Sorzano C, Marabini R, Herman G, Carazo J. Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction Pattern Recognition. 38: 2587-2601. DOI: 10.1016/J.Patcog.2005.03.013  0.799
2005 Fernandez J, Bilbao-Castro J, Marabini R, Carazo J, Garcia I. On the suitability of Biological structure determination by electron microscopy to Grid Computing New Generation Computing. 23: 101-112. DOI: 10.1007/Bf03037653  0.698
2004 Sorzano CO, Marabini R, Velázquez-Muriel J, Bilbao-Castro JR, Scheres SH, Carazo JM, Pascual-Montano A. XMIPP: a new generation of an open-source image processing package for electron microscopy. Journal of Structural Biology. 148: 194-204. PMID 15477099 DOI: 10.1016/J.Jsb.2004.06.006  0.854
2004 Marabini R, Sorzano CO, Matej S, Fernández JJ, Carazo JM, Herman GT. 3-d reconstruction of 2-D crystals in real space. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 13: 549-61. PMID 15376589 DOI: 10.1109/Tip.2003.822620  0.823
2004 Sorzano CO, Marabini R, Herman GT, Censor Y, Carazo JM. Transfer function restoration in 3D electron microscopy via iterative data refinement. Physics in Medicine and Biology. 49: 509-22. PMID 15005161 DOI: 10.1088/0031-9155/49/4/003  0.792
2004 Bilbao-Castro JR, Marabini R, Carazo JM, Garcia I, Fernandez JJ. THE POTENTIAL OF GRID COMPUTING IN THREE-DIMENSIONAL ELECTRON MICROSCOPY Parallel Processing Letters. 14: 151-162. DOI: 10.1142/S0129626404001805  0.716
2004 Fernandez J, Bilbao-Castro J, Marabini R, Carazo J, Garcia I. Biological structure determination by EM is well suited to grid computing New Generation Computing. 22: 187-188. DOI: 10.1007/Bf03040957  0.699
2003 Zubelli JP, Marabini R, Sorzano COS, Herman GT. Three-dimensional reconstruction by Chahine s method from electron microscopic projections corrupted by instrumental aberrations Inverse Problems. 19: 933-949. DOI: 10.1088/0266-5611/19/4/310  0.637
2003 Fernández J, Bilbao-Castro J, Marabini R, Carazo JM, García I. Grid Computing in structure determination of biological specimens by electron microscope tomography Lecture Notes in Computer Science. 171-181. DOI: 10.1007/978-3-540-24689-3_22  0.689
2002 Dimmeler E, Marabini R, Tittmann P, Gross H. Correlation of topographic surface and volume data from three-dimensional electron microscopy. Journal of Structural Biology. 136: 20-9. PMID 11858704 DOI: 10.1006/Jsbi.2001.4422  0.391
2002 Marabini R, Herman GT, Sorzano COS, Carazo JM. Volumetric constraints in 3D tomography applied to electron microscopy Proceedings - International Symposium On Biomedical Imaging. 2002: 641-644. DOI: 10.1109/ISBI.2002.1029339  0.777
2001 Sorzano CO, Marabini R, Boisset N, Rietzel E, Schröder R, Herman GT, Carazo JM. The effect of overabundant projection directions on 3D reconstruction algorithms. Journal of Structural Biology. 133: 108-18. PMID 11472083 DOI: 10.1006/Jsbi.2001.4338  0.772
2000 Herman GT, Marabini R, Carazo J, Gardu�o E, Lewitt RM, Matej S. Image processing approaches to biological three-dimensional electron microscopy International Journal of Imaging Systems and Technology. 11: 12-29. DOI: 10.1002/(Sici)1098-1098(2000)11:1<12::Aid-Ima3>3.0.Co;2-N  0.814
1998 Marabini R, Herman GT, Carazo JM. 3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs) Ultramicroscopy. 72: 53-65. PMID 9561797 DOI: 10.1016/S0304-3991(97)00127-7  0.783
1998 Marabini R, Rietzel E, Schroeder R, Herman GT, Carazo JM. Three-dimensional reconstruction from reduced sets of very noisy images acquired following a single-axis tilt schema: application of a new three-dimensional reconstruction algorithm and objective comparison with weighted backprojection. Journal of Structural Biology. 120: 363-71. PMID 9441939 DOI: 10.1006/Jsbi.1997.3923  0.796
1998 Merelo JJ, Prieto A, Morán F, Marabini R, Carazo JM. Neural Processing Letters. 8: 55-65. DOI: 10.1023/A:1009617113191  0.695
1996 Marabini R, Masegosa IM, Martı́n MCS, Marco S, Fernández JJ, Fraga LGdl, Vaquerizo C, Carazo JM. Xmipp: An Image Processing Package for Electron Microscopy Journal of Structural Biology. 116: 237-240. PMID 8812978 DOI: 10.1006/Jsbi.1996.0036  0.739
1996 Marabini R, Vaquerizo C, Fernández JJ, Carazo JM, Engel A, Frank J. Proposal for a new distributed database of macromolecular and subcellular structures from different areas of microscopy. Journal of Structural Biology. 116: 161-5. PMID 8742739 DOI: 10.1006/Jsbi.1996.0026  0.739
1996 Marabini R, Carazo J. On a new computationally fast image invariant based on bispectral projections Pattern Recognition Letters. 17: 959-967. DOI: 10.1016/0167-8655(96)00053-0  0.702
1994 Marabini R, Carazo JM. Pattern recognition and classification of images of biological macromolecules using artificial neural networks. Biophysical Journal. 66: 1804-14. PMID 7915552 DOI: 10.1016/S0006-3495(94)80974-9  0.726
1994 Marabini R, Carazo J. Practical issues on invariant image averaging using the Bispectrum Signal Processing. 40: 119-128. DOI: 10.1016/0165-1684(94)90063-9  0.713
Show low-probability matches.