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Slavica Jonic - Publications

Affiliations: 
CNRS (France) 
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Hamitouche I, Jonic S. DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images. Frontiers in Molecular Biosciences. 9: 965645. PMID 36158571 DOI: 10.3389/fmolb.2022.965645  0.327
2019 Harastani M, Sorzano COS, Jonić S. Hybrid Electron Microscopy Normal Mode Analysis with Scipion. Protein Science : a Publication of the Protein Society. PMID 31693263 DOI: 10.1002/Pro.3772  0.429
2019 Sorzano COS, Jiménez A, Mota J, Vilas JL, Maluenda D, Martínez M, Ramírez-Aportela E, Majtner T, Segura J, Sánchez-García R, Rancel Y, Del Caño L, Conesa P, Melero R, Jonic S, et al. Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy. Acta Crystallographica. Section F, Structural Biology Communications. 75: 19-32. PMID 30605122 DOI: 10.1107/S2053230X18015108  0.452
2018 Jiménez A, Jonic S, Majtner T, Otón J, Vilas JL, Maluenda D, Mota J, Ramírez-Aportela E, Martínez M, Rancel Y, Segura J, Sánchez-García R, Melero R, Del Cano L, Conesa P, et al. Validation of Electron Microscopy Initial Models via Small Angle X-Ray Scattering Curves. Bioinformatics (Oxford, England). PMID 30500892 DOI: 10.1093/Bioinformatics/Bty985  0.429
2018 Heymann JB, Marabini R, Kazemi M, Sorzano COS, Holmdahl M, Mendez JH, Stagg SM, Jonic S, Palovcak E, Armache JP, Zhao J, Cheng Y, Pintilie G, Chiu W, Patwardhan A, et al. The First Single Particle Analysis Map Challenge: A Summary of the Assessments. Journal of Structural Biology. PMID 30114512 DOI: 10.1016/J.Jsb.2018.08.010  0.346
2018 Jonić S. A methodology using Gaussian-based density map approximation to assess sets of cryo-electron microscopy density maps. Journal of Structural Biology. PMID 30036578 DOI: 10.1016/J.Jsb.2018.07.014  0.32
2018 Nakano M, Miyashita O, Jonic S, Tokuhisa A, Tama F. Single-particle XFEL 3D reconstruction of ribosome-size particles based on Fourier slice matching: requirements to reach subnanometer resolution. Journal of Synchrotron Radiation. 25: 1010-1021. PMID 29979162 DOI: 10.1107/S1600577518005568  0.406
2018 Jin Q, Miyashita O, Tama F, Yang J, Jonic S. Poisson image denoising by piecewise principal component analysis and its application in single-particle X-ray diffraction imaging Iet Image Processing. 12: 2264-2274. DOI: 10.1049/Iet-Ipr.2018.5145  0.405
2017 Nakano M, Miyashita O, Jonic S, Song C, Nam D, Joti Y, Tama F. Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL. Journal of Synchrotron Radiation. 24: 727-737. PMID 28664878 DOI: 10.1107/S1600577517007767  0.45
2017 Jonić S. Computational methods for analyzing conformational variability of macromolecular complexes from cryo-electron microscopy images. Current Opinion in Structural Biology. 43: 114-121. PMID 28088125 DOI: 10.1016/J.Sbi.2016.12.011  0.406
2016 Jonić S, Sorzano CO. Versatility of Approximating Single-Particle Electron Microscopy Density Maps Using Pseudoatoms and Approximation-Accuracy Control. Biomed Research International. 2016: 7060348. PMID 28097146 DOI: 10.1155/2016/7060348  0.358
2016 Jonić S. Cryo-electron Microscopy Analysis of Structurally Heterogeneous Macromolecular Complexes. Computational and Structural Biotechnology Journal. 14: 385-390. PMID 27800126 DOI: 10.1016/J.Csbj.2016.10.002  0.458
2016 Sanchez Sorzano CO, Alvarez-Cabrera AL, Kazemi M, Carazo JM, Jonić S. StructMap: Elastic Distance Analysis of Electron Microscopy Maps for Studying Conformational Changes. Biophysical Journal. 110: 1753-65. PMID 27119636 DOI: 10.1016/J.Bpj.2016.03.019  0.374
2016 Sorzano CO, Martín-Ramos A, Prieto F, Melero R, Martín-Benito J, Jonic S, Navas-Calvente J, Vargas J, Otón J, Abrishami V, de la Rosa-Trevín JM, Gómez-Blanco J, Vilas JL, Marabini R, Carazo JM. Local analysis of strains and rotations for macromolecular electron microscopy maps. Journal of Structural Biology. 195: 123-8. PMID 27102900 DOI: 10.1016/J.Jsb.2016.04.001  0.364
2016 Jonić S, Vargas J, Melero R, Gómez-Blanco J, Carazo JM, Sorzano CO. Denoising of high-resolution single-particle electron-microscopy density maps by their approximation using three-dimensional Gaussian functions. Journal of Structural Biology. 194: 423-33. PMID 27085420 DOI: 10.1016/J.Jsb.2016.04.007  0.416
2016 Tokuhisa A, Jonic S, Tama F, Miyashita O. Hybrid approach for structural modeling of biological systems from X-ray free electron laser diffraction patterns. Journal of Structural Biology. PMID 26972893 DOI: 10.1016/J.Jsb.2016.03.009  0.413
2016 Golic I, Aleksic M, Lazarevic A, Bogdanovic M, Jonic S, Korac A. Methods for studying the localization of mitochondrial complexes III and IV by immunofluorescent and immunogold microscopy Archives of Biological Sciences. 68: 767-772. DOI: 10.2298/Abs150618061G  0.319
2016 Jonic S, Sanchez Sorzano CO. Coarse-Graining of Volumes for Modeling of Structure and Dynamics in Electron Microscopy: Algorithm to Automatically Control Accuracy of Approximation Ieee Journal of Selected Topics in Signal Processing. 10: 161-173. DOI: 10.1109/Jstsp.2015.2489186  0.432
2015 Marabini R, Carragher B, Chen S, Chen J, Cheng A, Downing KH, Frank J, Grassucci RA, Bernard Heymann J, Jiang W, Jonic S, Liao HY, Ludtke SJ, Patwari S, Piotrowski AL, et al. CTF Challenge: Result summary. Journal of Structural Biology. 190: 348-59. PMID 25913484 DOI: 10.1016/J.Jsb.2015.04.003  0.541
2015 Mornon JP, Hoffmann B, Jonic S, Lehn P, Callebaut I. Full-open and closed CFTR channels, with lateral tunnels from the cytoplasm and an alternative position of the F508 region, as revealed by molecular dynamics. Cellular and Molecular Life Sciences : Cmls. 72: 1377-403. PMID 25287046 DOI: 10.1007/S00018-014-1749-2  0.31
2014 Sorzano CO, de la Rosa-Trevín JM, Tama F, Jonić S. Hybrid Electron Microscopy Normal Mode Analysis graphical interface and protocol. Journal of Structural Biology. 188: 134-41. PMID 25268657 DOI: 10.1016/J.Jsb.2014.09.005  0.382
2014 Jin Q, Sorzano CO, de la Rosa-Trevín JM, Bilbao-Castro JR, Núñez-Ramírez R, Llorca O, Tama F, Jonić S. Iterative elastic 3D-to-2D alignment method using normal modes for studying structural dynamics of large macromolecular complexes. Structure (London, England : 1993). 22: 496-506. PMID 24508340 DOI: 10.1016/J.Str.2014.01.004  0.452
2014 Jin Q, Carlos Oscar SS, de la Rosa-Trevín JM, Tama F, Jonić S. Macromolecular Dynamics by Hybrid Electron Microscopy Normal Mode Analysis Microscopy and Microanalysis. 20: 1218-1219. DOI: 10.1017/S143192761400782X  0.396
2013 Nogales-Cadenas R, Jonic S, Tama F, Arteni AA, Tabas-Madrid D, Vázquez M, Pascual-Montano A, Sorzano CO. 3DEM Loupe: Analysis of macromolecular dynamics using structures from electron microscopy. Nucleic Acids Research. 41: W363-7. PMID 23671335 DOI: 10.1093/Nar/Gkt385  0.404
2013 Vargas J, Otón J, Marabini R, Jonic S, de la Rosa-Trevín JM, Carazo JM, Sorzano CO. FASTDEF: fast defocus and astigmatism estimation for high-throughput transmission electron microscopy. Journal of Structural Biology. 181: 136-48. PMID 23261401 DOI: 10.1016/J.Jsb.2012.12.006  0.4
2012 Sorzano C, Jonic S, Núñez-Ramírez R, Boisset N, Carazo J. Corrigendum to “Fast, robust and accurate determination of transmission electron microscopy contrast transfer function” [J. Struct. Biol. 160 (2007) 249–262] Journal of Structural Biology. 180: 387. DOI: 10.1016/J.Jsb.2012.05.022  0.6
2012 Devaux Z, Sorzano COS, Jonic S. Processing of Transmission Electron Microscopy Images for Single-Particle Analysis of Macromolecular Complexes Methods in Cell Biology. 112: 295-310. DOI: 10.1016/B978-0-12-405914-6.00016-0  0.506
2009 Jonic S, Vénien-Bryan C. Protein structure determination by electron cryo-microscopy. Current Opinion in Pharmacology. 9: 636-42. PMID 19464952 DOI: 10.1016/J.Coph.2009.04.006  0.449
2009 Vénien-Bryan C, Jonic S, Skamnaki V, Brown N, Bischler N, Oikonomakos NG, Boisset N, Johnson LN. The structure of phosphorylase kinase holoenzyme at 9.9 angstroms resolution and location of the catalytic subunit and the substrate glycogen phosphorylase. Structure (London, England : 1993). 17: 117-27. PMID 19141288 DOI: 10.1016/J.Str.2008.10.013  0.635
2008 Jonić S, Sorzano CO, Boisset N. Comparison of single-particle analysis and electron tomography approaches: an overview. Journal of Microscopy. 232: 562-79. PMID 19094041 DOI: 10.1111/J.1365-2818.2008.02119.X  0.687
2008 Cottevieille M, Larquet E, Jonic S, Petoukhov MV, Caprini G, Paravisi S, Svergun DI, Vanoni MA, Boisset N. The subnanometer resolution structure of the glutamate synthase 1.2-MDa hexamer by cryoelectron microscopy and its oligomerization behavior in solution: functional implications. The Journal of Biological Chemistry. 283: 8237-49. PMID 18199747 DOI: 10.1074/Jbc.M708529200  0.613
2007 Sorzano CO, Jonic S, Núñez-Ramírez R, Boisset N, Carazo JM. Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function. Journal of Structural Biology. 160: 249-62. PMID 17911028 DOI: 10.1016/J.Jsb.2007.08.013  0.67
2007 Attia J, Rémita S, Jonic S, Lacaze E, Fauré MC, Larquet E, Goldmann M. Radiation-induced synthesis and cryo-TEM characterization of silver nanoshells on linoleate spherical micelles. Langmuir : the Acs Journal of Surfaces and Colloids. 23: 9523-6. PMID 17696459 DOI: 10.1021/La701366F  0.326
2007 Sorzano CO, Jonic S, Cottevieille M, Larquet E, Boisset N, Marco S. 3D electron microscopy of biological nanomachines: principles and applications. European Biophysics Journal : Ebj. 36: 995-1013. PMID 17611751 DOI: 10.1007/S00249-007-0203-X  0.675
2007 Jonić S, Sorzano CO, Cottevieille M, Larquet E, Boisset N. A novel method for improvement of visualization of power spectra for sorting cryo-electron micrographs and their local areas. Journal of Structural Biology. 157: 156-67. PMID 16987671 DOI: 10.1016/J.Jsb.2006.06.014  0.653
2006 Jonic S, Thévenaz P, Zheng G, Nolte L, Unser M. An Optimized Spline-Based Registration of a 3D CT to a Set of C-Arm Images International Journal of Biomedical Imaging. 2006: 47197-47197. PMID 23165033 DOI: 10.1155/Ijbi/2006/47197  0.508
2005 Jonić S, Sorzano CO, Thévenaz P, El-Bez C, De Carlo S, Unser M. Spline-based image-to-volume registration for three-dimensional electron microscopy. Ultramicroscopy. 103: 303-17. PMID 15885434 DOI: 10.1016/J.Ultramic.2005.02.002  0.564
2005 Unser M, Sorzano CO, Thévenaz P, Jonić S, El-Bez C, De Carlo S, Conway JF, Trus BL. Spectral signal-to-noise ratio and resolution assessment of 3D reconstructions. Journal of Structural Biology. 149: 243-55. PMID 15721578 DOI: 10.1016/J.Jsb.2004.10.011  0.525
2004 Sorzano CO, Jonić S, El-Bez C, Carazo JM, De Carlo S, Thévenaz P, Unser M. A multiresolution approach to orientation assignment in 3D electron microscopy of single particles. Journal of Structural Biology. 146: 381-92. PMID 15099579 DOI: 10.1016/J.Jsb.2004.01.006  0.567
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