| Year |
Citation |
Score |
| 2022 |
Uddin MM, Zhou Y, Bick AG, Burugula BB, Jaiswal S, Desai P, Honigberg MC, Love SA, Barac A, Hayden KM, Manson JE, Whitsel EA, Kooperberg C, Natarajan P, Reiner AP, ... Kitzman JO, et al. Longitudinal profiling of clonal hematopoiesis provides insight into clonal dynamics. Immunity & Ageing : I & A. 19: 23. PMID 35610705 DOI: 10.1186/s12979-022-00278-9 |
0.302 |
|
| 2021 |
Bick AG, Weinstock JS, Nandakumar SK, Fulco CP, Bao EL, Zekavat SM, Szeto MD, Liao X, Leventhal MJ, Nasser J, Chang K, Laurie C, Burugula BB, Gibson CJ, Niroula A, ... ... Kitzman JO, et al. Author Correction: Inherited causes of clonal haematopoiesis in 97,691 whole genomes. Nature. PMID 33707633 DOI: 10.1038/s41586-021-03280-1 |
0.441 |
|
| 2020 |
Bick AG, Weinstock JS, Nandakumar SK, Fulco CP, Bao EL, Zekavat SM, Szeto MD, Liao X, Leventhal MJ, Nasser J, Chang K, Laurie C, Burugula BB, Gibson CJ, Lin AE, ... ... Kitzman JO, et al. Inherited causes of clonal haematopoiesis in 97,691 whole genomes. Nature. PMID 33057201 DOI: 10.1038/s41586-020-2819-2 |
0.395 |
|
| 2020 |
Harrison JJ, Almblad H, Irie Y, Wolter DJ, Eggleston HC, Randall TE, Kitzman JO, Stackhouse B, Emerson JC, Mcnamara S, Larsen TJ, Shendure J, Hoffman LR, Wozniak DJ, Parsek MR. Elevated exopolysaccharide levels in Pseudomonas aeruginosa flagellar mutants have implications for biofilm growth and chronic infections. Plos Genetics. 16: e1008848. PMID 32530919 DOI: 10.1371/Journal.Pgen.1008848 |
0.594 |
|
| 2020 |
Orchard P, Kyono Y, Hensley J, Kitzman JO, Parker SCJ. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv. Cell Systems. 10: 298-306.e4. PMID 32213349 DOI: 10.1016/J.Cels.2020.02.009 |
0.42 |
|
| 2020 |
Harrison JJ, Almblad H, Irie Y, Wolter DJ, Eggleston HC, Randall TE, Kitzman JO, Stackhouse B, Emerson JC, Mcnamara S, Larsen TJ, Shendure J, Hoffman LR, Wozniak DJ, Parsek MR. Supplementary materials and methods and supplementary references. Plos Genetics. DOI: 10.1371/Journal.Pgen.1008848.S001 |
0.555 |
|
| 2020 |
Vishnopolska SA, Braslavsky D, Keselman AC, Bergada I, Marino RM, Ramirez PC, Natalia PG, Ciaccio M, Palma MID, Belgorosky A, Miras M, Nicola JP, Mortensen AH, Martí MA, Camper SA, ... Kitzman J, et al. MON-717 Novel GLI2 Mutations Identified in Pediatric Patients with Combined Pituitary Hormone Deficiency: One Gene, Various Genotypes Journal of the Endocrine Society. 4. DOI: 10.1210/Jendso/Bvaa046.1778 |
0.334 |
|
| 2019 |
Lenk GM, Park YN, Lemons R, Flynn E, Plank M, Frei CM, Davis MJ, Gregorka B, Swanson JA, Meisler MH, Kitzman JO. CRISPR knockout screen implicates three genes in lysosome function. Scientific Reports. 9: 9609. PMID 31270356 DOI: 10.1038/S41598-019-45939-W |
0.36 |
|
| 2019 |
Kyono Y, Kitzman JO, Parker SCJ. Genomic annotation of disease-associated variants reveals shared functional contexts. Diabetologia. PMID 30756131 DOI: 10.1007/S00125-019-4823-3 |
0.493 |
|
| 2019 |
Vishnopolska S, Mortensen A, Braslavsky D, Keselman A, Bergada I, Marino R, Ramirez P, Perez Garrido N, Ciaccio M, Di Palma M, Belgorosky A, Marti M, Kitzman J, Camper S, Perez Millan M. MON-472 Potentially Pathogenic Variants Identified in Patients with Hypopituitarism by Molecular Inversion Probe Sequencing (MIPS), a New Molecular Approach for Low Cost Gene Panel Sequencing Journal of the Endocrine Society. 3. DOI: 10.1210/Js.2019-Mon-472 |
0.409 |
|
| 2018 |
Nielsen JB, Thorolfsdottir RB, Fritsche LG, Zhou W, Skov MW, Graham SE, Herron TJ, McCarthy S, Schmidt EM, Sveinbjornsson G, Surakka I, Mathis MR, Yamazaki M, Crawford RD, Gabrielsen ME, ... ... Kitzman J, et al. Biobank-driven genomic discovery yields new insight into atrial fibrillation biology. Nature Genetics. PMID 30061737 DOI: 10.1038/S41588-018-0171-3 |
0.354 |
|
| 2018 |
Pérez Millán MI, Vishnopolska SA, Daly AZ, Bustamante JP, Seilicovich A, Bergadá I, Braslavsky D, Keselman AC, Lemons RM, Mortensen AH, Marti MA, Camper SA, Kitzman JO. Next generation sequencing panel based on single molecule molecular inversion probes for detecting genetic variants in children with hypopituitarism. Molecular Genetics & Genomic Medicine. PMID 29739035 DOI: 10.1002/Mgg3.395 |
0.372 |
|
| 2018 |
Hosoya T, D'Oliveira Albanus R, Hensley J, Myers G, Kyono Y, Kitzman J, Parker SCJ, Engel JD. Global dynamics of stage-specific transcription factor binding during thymocyte development. Scientific Reports. 8: 5605. PMID 29618724 DOI: 10.1038/S41598-018-23774-9 |
0.32 |
|
| 2017 |
Nielsen JB, Fritsche LG, Zhou W, Teslovich TM, Holmen OL, Gustafsson S, Gabrielsen ME, Schmidt EM, Beaumont R, Wolford BN, Lin M, Brummett CM, Preuss MH, Refsgaard L, Bottinger EP, ... ... Kitzman J, et al. Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development. American Journal of Human Genetics. PMID 29290336 DOI: 10.1016/J.Ajhg.2017.12.003 |
0.423 |
|
| 2017 |
Starita LM, Ahituv N, Dunham MJ, Kitzman JO, Roth FP, Seelig G, Shendure J, Fowler DM. Variant Interpretation: Functional Assays to the Rescue. American Journal of Human Genetics. 101: 315-325. PMID 28886340 DOI: 10.1016/J.Ajhg.2017.07.014 |
0.637 |
|
| 2017 |
Yang B, Zhou W, Jiao J, Nielsen JB, Mathis MR, Heydarpour M, Lettre G, Folkersen L, Prakash S, Schurmann C, Fritsche L, Farnum GA, Lin M, Othman M, Hornsby W, ... ... Kitzman J, et al. Protein-altering and regulatory genetic variants near GATA4 implicated in bicuspid aortic valve. Nature Communications. 8: 15481. PMID 28541271 DOI: 10.1038/Ncomms15481 |
0.312 |
|
| 2017 |
Kitzman JO, Starita LM, Lo RS, Fields S, Shendure J. Erratum: Corrigendum: Massively parallel single-amino-acid mutagenesis Nature Methods. 14: 540-540. DOI: 10.1038/Nmeth0517-540B |
0.573 |
|
| 2016 |
Fang Q, George AS, Brinkmeier ML, Mortensen AH, Gergics P, Cheung LY, Daly AZ, Ajmal A, Millán MI, Ozel AB, Kitzman JO, Mills RE, Li JZ, Camper SA. Genetics of Combined Pituitary Hormone Deficiency: Roadmap into the Genome Era. Endocrine Reviews. er20161101. PMID 27828722 DOI: 10.1210/Er.2016-1101 |
0.395 |
|
| 2016 |
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, ... ... Kitzman J, et al. Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 538: 336-343. PMID 27762356 DOI: 10.1038/Nature19840 |
0.724 |
|
| 2016 |
Underhill HR, Kitzman JO, Hellwig S, Welker NC, Daza R, Baker DN, Gligorich KM, Rostomily RC, Bronner MP, Shendure J. Fragment Length of Circulating Tumor DNA. Plos Genetics. 12: e1006162. PMID 27428049 DOI: 10.1371/Journal.Pgen.1006162 |
0.606 |
|
| 2016 |
Kitzman JO. Haplotypes drop by drop. Nature Biotechnology. 34: 296-8. PMID 26963554 DOI: 10.1038/Nbt.3500 |
0.395 |
|
| 2015 |
Phadnis N, Baker EP, Cooper JC, Frizzell KA, Hsieh E, de la Cruz AF, Shendure J, Kitzman JO, Malik HS. An essential cell cycle regulation gene causes hybrid inviability in Drosophila. Science (New York, N.Y.). 350: 1552-5. PMID 26680200 DOI: 10.1126/Science.Aac7504 |
0.639 |
|
| 2015 |
Jorth P, Staudinger BJ, Wu X, Hisert KB, Hayden H, Garudathri J, Harding CL, Radey MC, Rezayat A, Bautista G, Berrington WR, Goddard AF, Zheng C, Angermeyer A, Brittnacher MJ, ... Kitzman J, et al. Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis Lungs. Cell Host & Microbe. 18: 307-19. PMID 26299432 DOI: 10.1016/J.Chom.2015.07.006 |
0.601 |
|
| 2015 |
Brennan G, Kitzman JO, Shendure J, Geballe AP. Experimental Evolution Identifies Vaccinia Virus Mutations in A24R and A35R That Antagonize the Protein Kinase R Pathway and Accompany Collapse of an Extragenic Gene Amplification. Journal of Virology. 89: 9986-97. PMID 26202237 DOI: 10.1128/Jvi.01233-15 |
0.612 |
|
| 2015 |
Kumar A, Ryan A, Kitzman JO, Wemmer N, Snyder MW, Sigurjonsson S, Lee C, Banjevic M, Zarutskie PW, Lewis AP, Shendure J, Rabinowitz M. Whole genome prediction for preimplantation genetic diagnosis. Genome Medicine. 7: 35. PMID 26019723 DOI: 10.1186/S13073-015-0160-4 |
0.8 |
|
| 2015 |
Snyder MW, Adey A, Kitzman JO, Shendure J. Haplotype-resolved genome sequencing: experimental methods and applications. Nature Reviews. Genetics. 16: 344-58. PMID 25948246 DOI: 10.1038/Nrg3903 |
0.838 |
|
| 2015 |
Snyder MW, Simmons LE, Kitzman JO, Coe BP, Henson JM, Daza RM, Eichler EE, Shendure J, Gammill HS. Copy-number variation and false positive prenatal aneuploidy screening results. The New England Journal of Medicine. 372: 1639-45. PMID 25830323 DOI: 10.1056/Nejmoa1408408 |
0.688 |
|
| 2015 |
Starita LM, Young DL, Islam M, Kitzman JO, Gullingsrud J, Hause RJ, Fowler DM, Parvin JD, Shendure J, Fields S. Massively Parallel Functional Analysis of BRCA1 RING Domain Variants. Genetics. 200: 413-22. PMID 25823446 DOI: 10.1534/Genetics.115.175802 |
0.628 |
|
| 2015 |
Kitzman JO, Starita LM, Lo RS, Fields S, Shendure J. Massively parallel single-amino-acid mutagenesis. Nature Methods. 12: 203-6, 4 p following. PMID 25559584 DOI: 10.1038/Nmeth.3223 |
0.636 |
|
| 2015 |
Salipante SJ, Roach DJ, Kitzman JO, Snyder MW, Stackhouse B, Butler-Wu SM, Lee C, Cookson BT, Shendure J. Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains. Genome Research. 25: 119-28. PMID 25373147 DOI: 10.1101/Gr.180190.114 |
0.809 |
|
| 2015 |
Kitzman JO, Starita LM, Lo RS, Fields S, Shendure J. Massively parallel single-amino-acid mutagenesis Nature Methods. 12: 203-206. DOI: 10.1038/nmeth.3223 |
0.51 |
|
| 2014 |
Kumar A, Boyle EA, Tokita M, Mikheev AM, Sanger MC, Girard E, Silber JR, Gonzalez-Cuyar LF, Hiatt JB, Adey A, Lee C, Kitzman JO, Born DE, Silbergeld DL, Olson JM, et al. Deep sequencing of multiple regions of glial tumors reveals spatial heterogeneity for mutations in clinically relevant genes. Genome Biology. 15: 530. PMID 25608559 DOI: 10.1186/S13059-014-0530-Z |
0.748 |
|
| 2014 |
Adey A, Kitzman JO, Burton JN, Daza R, Kumar A, Christiansen L, Ronaghi M, Amini S, Gunderson KL, Steemers FJ, Shendure J. In vitro, long-range sequence information for de novo genome assembly via transposase contiguity. Genome Research. 24: 2041-9. PMID 25327137 DOI: 10.1101/Gr.178319.114 |
0.838 |
|
| 2014 |
Amini S, Pushkarev D, Christiansen L, Kostem E, Royce T, Turk C, Pignatelli N, Adey A, Kitzman JO, Vijayan K, Ronaghi M, Shendure J, Gunderson KL, Steemers FJ. Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing. Nature Genetics. 46: 1343-9. PMID 25326703 DOI: 10.1038/Ng.3119 |
0.847 |
|
| 2014 |
Brennan G, Kitzman JO, Rothenburg S, Shendure J, Geballe AP. Adaptive Gene Amplification As an Intermediate Step in the Expansion of Virus Host Range Plos Pathogens. 10. PMID 24626510 DOI: 10.1371/Journal.Ppat.1004002 |
0.609 |
|
| 2014 |
Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, ... ... Kitzman JO, et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature. 505: 43-9. PMID 24352235 DOI: 10.1038/Nature12886 |
0.804 |
|
| 2014 |
Adey A, Kitzman JO, Burton JN, Daza R, Kumar A, Christiansen L, Ronaghi M, Amini S, Gunderson KL, Steemers FJ, Shendure J. In vitro, long-range sequence information for de novo genome assembly via transposase contiguity Genome Research. 24: 2041-2049. DOI: 10.1101/gr.178319.114 |
0.824 |
|
| 2013 |
Burton JN, Adey A, Patwardhan RP, Qiu R, Kitzman JO, Shendure J. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions Nature Biotechnology. 31: 1119-1125. PMID 24185095 DOI: 10.1038/Nbt.2727 |
0.806 |
|
| 2013 |
Adey A, Burton JN, Kitzman JO, Hiatt JB, Lewis AP, Martin BK, Qiu R, Lee C, Shendure J. The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line. Nature. 500: 207-11. PMID 23925245 DOI: 10.1038/Nature12064 |
0.794 |
|
| 2013 |
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Kitzman JO, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10 |
0.827 |
|
| 2013 |
Snyder MW, Simmons LE, Kitzman JO, Santillan DA, Santillan MK, Gammill HS, Shendure J. Noninvasive fetal genome sequencing: A primer Prenatal Diagnosis. 33: 547-554. PMID 23553552 DOI: 10.1002/Pd.4097 |
0.798 |
|
| 2012 |
Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, ... ... Kitzman J, et al. A high-coverage genome sequence from an archaic Denisovan individual. Science (New York, N.Y.). 338: 222-6. PMID 22936568 DOI: 10.1126/Science.1224344 |
0.807 |
|
| 2012 |
Elde NC, Child SJ, Eickbush MT, Kitzman JO, Rogers KS, Shendure J, Geballe AP, Malik HS. Poxviruses deploy genomic accordions to adapt rapidly against host antiviral defenses. Cell. 150: 831-41. PMID 22901812 DOI: 10.1016/J.Cell.2012.05.049 |
0.675 |
|
| 2012 |
Tabor HK, Murray JC, Gammill HS, Kitzman JO, Snyder MW, Ventura M, Lewis AP, Qiu R, Simmons LE, Rubens CE, Santillan MK, Eichler EE, Cheng EY, Bamshad MJ, Shendure J. Non-invasive fetal genome sequencing: opportunities and challenges. American Journal of Medical Genetics. Part A. 158: 2382-4. PMID 22887792 DOI: 10.1002/Ajmg.A.35545 |
0.729 |
|
| 2012 |
Kitzman JO, Snyder MW, Ventura M, Lewis AP, Qiu R, Simmons LE, Gammill HS, Rubens CE, Santillan DA, Murray JC, Tabor HK, Bamshad MJ, Eichler EE, Shendure J. Noninvasive whole-genome sequencing of a human fetus. Science Translational Medicine. 4: 137ra76. PMID 22674554 DOI: 10.1126/Scitranslmed.3004323 |
0.791 |
|
| 2011 |
Kitzman JO, Mackenzie AP, Adey A, Hiatt JB, Patwardhan RP, Sudmant PH, Ng SB, Alkan C, Qiu R, Eichler EE, Shendure J. Haplotype-resolved genome sequencing of a Gujarati Indian individual. Nature Biotechnology. 29: 59-63. PMID 21170042 DOI: 10.1038/Nbt.1740 |
0.811 |
|
| 2011 |
Kitzman JO, MacKenzie AP, Adey A, Hiatt JB, Patwardhan RP, Sudmant PH, Ng SB, Alkan C, Qiu R, Eichler EE, Shendure J. Erratum: Haplotype-resolved genome sequencing of a Gujarati Indian individual Nature Biotechnology. 29: 459-459. DOI: 10.1038/Nbt0511-459C |
0.774 |
|
| 2010 |
Adey A, Morrison HG, Asan, Xun X, Kitzman JO, Turner EH, Stackhouse B, MacKenzie AP, Caruccio NC, Zhang X, Shendure J. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition Genome Biology. 11. PMID 21143862 DOI: 10.1186/Gb-2010-11-12-R119 |
0.8 |
|
| 2010 |
Sudmant PH, Kitzman JO, Antonacci F, Alkan C, Malig M, Tsalenko A, Sampas N, Bruhn L, Shendure J, Eichler EE. Diversity of human copy number variation and multicopy genes. Science (New York, N.Y.). 330: 641-6. PMID 21030649 DOI: 10.1126/Science.1197005 |
0.694 |
|
| 2010 |
Bainbridge MN, Wang M, Burgess DL, Kovar C, Rodesch MJ, D'Ascenzo M, Kitzman J, Wu YQ, Newsham I, Richmond TA, Jeddeloh JA, Muzny D, Albert TJ, Gibbs RA. Whole exome capture in solution with 3 Gbp of data. Genome Biology. 11: R62. PMID 20565776 DOI: 10.1186/Gb-2010-11-6-R62 |
0.5 |
|
| 2010 |
Fu Y, Springer NM, Gerhardt DJ, Ying K, Yeh CT, Wu W, Swanson-Wagner R, D'Ascenzo M, Millard T, Freeberg L, Aoyama N, Kitzman J, Burgess D, Richmond T, Albert TJ, et al. Repeat subtraction-mediated sequence capture from a complex genome. The Plant Journal : For Cell and Molecular Biology. 62: 898-909. PMID 20230488 DOI: 10.1111/J.1365-313X.2010.04196.X |
0.552 |
|
| 2009 |
Springer NM, Ying K, Fu Y, Ji T, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, Iniguez AL, Barbazuk WB, Jeddeloh JA, Nettleton D, Schnable PS. Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. Plos Genetics. 5: e1000734. PMID 19956538 DOI: 10.1371/Journal.Pgen.1000734 |
0.547 |
|
| 2009 |
Alkan C, Kidd JM, Marques-Bonet T, Aksay G, Antonacci F, Hormozdiari F, Kitzman JO, Baker C, Malig M, Mutlu O, Sahinalp SC, Gibbs RA, Eichler EE. Personalized copy number and segmental duplication maps using next-generation sequencing. Nature Genetics. 41: 1061-7. PMID 19718026 DOI: 10.1038/Ng.437 |
0.503 |
|
| 2009 |
Walter MJ, Payton JE, Ries RE, Shannon WD, Deshmukh H, Zhao Y, Baty J, Heath S, Westervelt P, Watson MA, Tomasson MH, Nagarajan R, O'Gara BP, Bloomfield CD, Mrózek K, ... ... Kitzman J, et al. Acquired copy number alterations in adult acute myeloid leukemia genomes. Proceedings of the National Academy of Sciences of the United States of America. 106: 12950-5. PMID 19651600 DOI: 10.1073/Pnas.0903091106 |
0.555 |
|
| 2009 |
D'Ascenzo M, Meacham C, Kitzman J, Middle C, Knight J, Winer R, Kukricar M, Richmond T, Albert TJ, Czechanski A, Donahue LR, Affourtit J, Jeddeloh JA, Reinholdt L. Mutation discovery in the mouse using genetically guided array capture and resequencing Mammalian Genome. 20: 424-436. PMID 19629596 DOI: 10.1007/S00335-009-9200-Y |
0.453 |
|
| 2007 |
Walter MJ, Ries R, Li X, Shannon W, Payton J, Books J, Bloomfield C, Mrozek K, Ruppert A, DiPersio J, Link D, Tomasson M, Graubert T, Westervelt P, Watson M, ... ... Kitzman J, et al. High Resolution Array-Based CGH and SNP Studies of AML Genomes. Blood. 110: 107-107. DOI: 10.1182/Blood.V110.11.107.107 |
0.427 |
|
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