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Ziad S. Saad - Publications

Affiliations: 
National Institute of Mental Health, Bethesda, MD, United States 
Area:
neuroimaging methods
Website:
http://afni.nimh.nih.gov/sscc/ziad
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56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Selvaganesan K, Whitehead E, DeAlwis PM, Schindler MK, Inati S, Saad ZS, Ohayon JE, Cortese ICM, Smith B, Steven Jacobson, Nath A, Reich DS, Inati S, Nair G. Robust, atlas-free, automatic segmentation of brain MRI in health and disease. Heliyon. 5: e01226. PMID 30828660 DOI: 10.1016/J.Heliyon.2019.E01226  0.336
2017 Branco MP, Gaglianese A, Glen D, Hermes D, Saad ZS, Petridou N, Ramsey NF. ALICE: A tool for automatic localization of intra-cranial electrodes for clinical and high-density grids. Journal of Neuroscience Methods. PMID 29100838 DOI: 10.1016/J.Jneumeth.2017.10.022  0.6
2017 Trotta MS, Cocjin J, Whitehead E, Damera S, Wittig JH, Saad ZS, Inati SK, Zaghloul KA. Surface based electrode localization and standardized regions of interest for intracranial EEG. Human Brain Mapping. PMID 29094783 DOI: 10.1002/Hbm.23876  0.359
2017 Gregory MD, Kippenhan JS, Eisenberg DP, Kohn PD, Dickinson D, Mattay VS, Chen Q, Weinberger DR, Saad ZS, Berman KF. Neanderthal-Derived Genetic Variation Shapes Modern Human Cranium and Brain. Scientific Reports. 7: 6308. PMID 28740249 DOI: 10.1038/S41598-017-06587-0  0.33
2016 Reveley C, Gruslys A, Ye FQ, Glen D, Samaha J, E Russ B, Saad Z, K Seth A, Leopold DA, Saleem KS. Three-Dimensional Digital Template Atlas of the Macaque Brain. Cerebral Cortex (New York, N.Y. : 1991). PMID 27566980 DOI: 10.1093/Cercor/Bhw248  0.382
2015 Steel A, Song S, Bageac D, Knutson KM, Keisler A, Saad ZS, Gotts SJ, Wassermann EM, Wilkinson L. Shifts in connectivity during procedural learning after motor cortex stimulation: A combined transcranial magnetic stimulation/functional magnetic resonance imaging study. Cortex; a Journal Devoted to the Study of the Nervous System and Behavior. 74: 134-148. PMID 26673946 DOI: 10.1016/J.Cortex.2015.10.004  0.321
2015 Chen G, Saad ZS, Adleman NE, Leibenluft E, Cox RW. Detecting the subtle shape differences in hemodynamic responses at the group level. Frontiers in Neuroscience. 9: 375. PMID 26578853 DOI: 10.3389/Fnins.2015.00375  0.379
2015 Lauro PM, Vanegas-Arroyave N, Huang L, Taylor PA, Zaghloul KA, Lungu C, Saad ZS, Horovitz SG. DBSproc: An open source process for DBS electrode localization and tractographic analysis. Human Brain Mapping. PMID 26523416 DOI: 10.1002/Hbm.23039  0.329
2015 Taylor P, Chen G, Cox R, Saad Z. Open Environment for Multimodal Interactive Connectivity Visualization and Analysis. Brain Connectivity. PMID 26447394 DOI: 10.1089/brain.2015.0363  0.38
2015 Gonzalez-Castillo J, Hoy CW, Handwerker DA, Robinson ME, Buchanan LC, Saad ZS, Bandettini PA. Tracking ongoing cognition in individuals using brief, whole-brain functional connectivity patterns. Proceedings of the National Academy of Sciences of the United States of America. PMID 26124112 DOI: 10.1073/Pnas.1501242112  0.761
2014 Gonzalez-Castillo J, Hoy CW, Handwerker DA, Roopchansingh V, Inati SJ, Saad ZS, Cox RW, Bandettini PA. Task Dependence, Tissue Specificity, and Spatial Distribution of Widespread Activations in Large Single-Subject Functional MRI Datasets at 7T. Cerebral Cortex (New York, N.Y. : 1991). PMID 25405938 DOI: 10.1093/Cercor/Bhu148  0.777
2014 Kadipasaoglu CM, Baboyan VG, Conner CR, Chen G, Saad ZS, Tandon N. Surface-based mixed effects multilevel analysis of grouped human electrocorticography. Neuroimage. 101: 215-24. PMID 25019677 DOI: 10.1016/J.Neuroimage.2014.07.006  0.364
2014 Gonzalez-Castillo J, Handwerker DA, Robinson ME, Hoy CW, Buchanan LC, Saad ZS, Bandettini PA. The spatial structure of resting state connectivity stability on the scale of minutes. Frontiers in Neuroscience. 8: 138. PMID 24999315 DOI: 10.3389/Fnins.2014.00138  0.764
2014 Chen G, Adleman NE, Saad ZS, Leibenluft E, Cox RW. Applications of multivariate modeling to neuroimaging group analysis: a comprehensive alternative to univariate general linear model. Neuroimage. 99: 571-88. PMID 24954281 DOI: 10.1016/J.Neuroimage.2014.06.027  0.338
2013 Jo HJ, Gotts SJ, Reynolds RC, Bandettini PA, Martin A, Cox RW, Saad ZS. Effective Preprocessing Procedures Virtually Eliminate Distance-Dependent Motion Artifacts in Resting State FMRI. Journal of Applied Mathematics. 2013. PMID 24415902 DOI: 10.1155/2013/935154  0.529
2013 Kundu P, Brenowitz ND, Voon V, Worbe Y, Vértes PE, Inati SJ, Saad ZS, Bandettini PA, Bullmore ET. Integrated strategy for improving functional connectivity mapping using multiecho fMRI. Proceedings of the National Academy of Sciences of the United States of America. 110: 16187-92. PMID 24038744 DOI: 10.1073/Pnas.1301725110  0.616
2013 Taylor PA, Saad ZS. FATCAT: (an efficient) Functional and Tractographic Connectivity Analysis Toolbox. Brain Connectivity. 3: 523-35. PMID 23980912 DOI: 10.1089/brain.2013.0154  0.343
2013 Gotts SJ, Jo HJ, Wallace GL, Saad ZS, Cox RW, Martin A. Two distinct forms of functional lateralization in the human brain. Proceedings of the National Academy of Sciences of the United States of America. 110: E3435-44. PMID 23959883 DOI: 10.1073/pnas.1302581110  0.361
2013 Gotts SJ, Saad ZS, Jo HJ, Wallace GL, Cox RW, Martin A. The perils of global signal regression for group comparisons: a case study of Autism Spectrum Disorders. Frontiers in Human Neuroscience. 7: 356. PMID 23874279 DOI: 10.3389/fnhum.2013.00356  0.333
2013 Saad ZS, Reynolds RC, Jo HJ, Gotts SJ, Chen G, Martin A, Cox RW. Correcting brain-wide correlation differences in resting-state FMRI. Brain Connectivity. 3: 339-52. PMID 23705677 DOI: 10.1089/brain.2013.0156  0.424
2013 Chen G, Saad ZS, Britton JC, Pine DS, Cox RW. Linear mixed-effects modeling approach to FMRI group analysis. Neuroimage. 73: 176-90. PMID 23376789 DOI: 10.1016/J.Neuroimage.2013.01.047  0.354
2013 Gonzalez-Castillo J, Duthie KN, Saad ZS, Chu C, Bandettini PA, Luh WM. Effects of image contrast on functional MRI image registration. Neuroimage. 67: 163-74. PMID 23128074 DOI: 10.1016/J.Neuroimage.2012.10.076  0.71
2012 Jo HJ, Saad ZS, Gotts SJ, Martin A, Cox RW. Quantifying agreement between anatomical and functional interhemispheric correspondences in the resting brain. Plos One. 7: e48847. PMID 23144995 DOI: 10.1371/journal.pone.0048847  0.399
2012 Saad ZS, Gotts SJ, Murphy K, Chen G, Jo HJ, Martin A, Cox RW. Trouble at rest: how correlation patterns and group differences become distorted after global signal regression. Brain Connectivity. 2: 25-32. PMID 22432927 DOI: 10.1089/brain.2012.0080  0.592
2012 Gonzalez-Castillo J, Saad ZS, Handwerker DA, Inati SJ, Brenowitz N, Bandettini PA. Whole-brain, time-locked activation with simple tasks revealed using massive averaging and model-free analysis. Proceedings of the National Academy of Sciences of the United States of America. 109: 5487-92. PMID 22431587 DOI: 10.1073/Pnas.1121049109  0.776
2012 Chen G, Saad ZS, Nath AR, Beauchamp MS, Cox RW. FMRI group analysis combining effect estimates and their variances. Neuroimage. 60: 747-65. PMID 22245637 DOI: 10.1016/j.neuroimage.2011.12.060  0.614
2012 Yu X, Glen D, Wang S, Dodd S, Hirano Y, Saad Z, Reynolds R, Silva AC, Koretsky AP. Direct imaging of macrovascular and microvascular contributions to BOLD fMRI in layers IV-V of the rat whisker-barrel cortex. Neuroimage. 59: 1451-60. PMID 21851857 DOI: 10.1016/J.Neuroimage.2011.08.001  0.364
2011 Chen G, Glen DR, Saad ZS, Paul Hamilton J, Thomason ME, Gotlib IH, Cox RW. Vector autoregression, structural equation modeling, and their synthesis in neuroimaging data analysis. Computers in Biology and Medicine. 41: 1142-55. PMID 21975109 DOI: 10.1016/J.Compbiomed.2011.09.004  0.313
2011 Beauchamp MS, Beurlot MR, Fava E, Nath AR, Parikh NA, Saad ZS, Bortfeld H, Oghalai JS. The developmental trajectory of brain-scalp distance from birth through childhood: implications for functional neuroimaging. Plos One. 6: e24981. PMID 21957470 DOI: 10.1371/Journal.Pone.0024981  0.63
2011 Vovk A, Cox RW, Stare J, Suput D, Saad ZS. Segmentation priors from local image properties: without using bias field correction, location-based templates, or registration. Neuroimage. 55: 142-52. PMID 21146620 DOI: 10.1016/j.neuroimage.2010.11.082  0.316
2011 Vovk A, Cox RW, Šuput D, Stare J, Saad ZS. Use of signatures to create probability maps of brain tissues in health and disease - a new diagnostic tool? Slovenian Medical Journal. 80: 476-482. DOI: 10.6016/113  0.354
2010 Jo HJ, Saad ZS, Simmons WK, Milbury LA, Cox RW. Mapping sources of correlation in resting state FMRI, with artifact detection and removal. Neuroimage. 52: 571-82. PMID 20420926 DOI: 10.1016/j.neuroimage.2010.04.246  0.419
2010 Kim JH, Lee JM, Jo HJ, Kim SH, Lee JH, Kim ST, Seo SW, Cox RW, Na DL, Kim SI, Saad ZS. Defining functional SMA and pre-SMA subregions in human MFC using resting state fMRI: functional connectivity-based parcellation method. Neuroimage. 49: 2375-86. PMID 19837176 DOI: 10.1016/J.Neuroimage.2009.10.016  0.404
2009 Thomas AG, Marrett S, Saad ZS, Ruff DA, Martin A, Bandettini PA. Functional but not structural changes associated with learning: an exploration of longitudinal voxel-based morphometry (VBM). Neuroimage. 48: 117-25. PMID 19520171 DOI: 10.1016/J.Neuroimage.2009.05.097  0.546
2009 Olsen RK, Kippenhan JS, Japee S, Kohn P, Mervis CB, Saad ZS, Morris CA, Meyer-Lindenberg A, Berman KF. Retinotopically defined primary visual cortex in Williams syndrome. Brain : a Journal of Neurology. 132: 635-44. PMID 19255058 DOI: 10.1093/brain/awn362  0.315
2009 Saad ZS, Glen DR, Chen G, Beauchamp MS, Desai R, Cox RW. A new method for improving functional-to-structural MRI alignment using local Pearson correlation. Neuroimage. 44: 839-48. PMID 18976717 DOI: 10.1016/J.Neuroimage.2008.09.037  0.616
2009 Nahab FB, Hattori N, Saad ZS, Hallett M. Contagious yawning and the frontal lobe: an fMRI study. Human Brain Mapping. 30: 1744-51. PMID 18937281 DOI: 10.1002/Hbm.20638  0.327
2008 Simmons JM, Saad ZS, Lizak MJ, Ortiz M, Koretsky AP, Richmond BJ. Mapping prefrontal circuits in vivo with manganese-enhanced magnetic resonance imaging in monkeys. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 7637-47. PMID 18650340 DOI: 10.1523/JNEUROSCI.1488-08.2008  0.362
2007 Simonyan K, Saad ZS, Loucks TM, Poletto CJ, Ludlow CL. Functional neuroanatomy of human voluntary cough and sniff production. Neuroimage. 37: 401-9. PMID 17574873 DOI: 10.1016/j.neuroimage.2007.05.021  0.349
2006 Saad ZS, Chen G, Reynolds RC, Christidis PP, Hammett KR, Bellgowan PS, Cox RW. Functional imaging analysis contest (FIAC) analysis according to AFNI and SUMA. Human Brain Mapping. 27: 417-24. PMID 16568421 DOI: 10.1002/hbm.20247  0.409
2006 Kosson DS, Budhani S, Nakic M, Chen G, Saad ZS, Vythilingam M, Pine DS, Blair RJ. The role of the amygdala and rostral anterior cingulate in encoding expected outcomes during learning. Neuroimage. 29: 1161-72. PMID 16387514 DOI: 10.1016/j.neuroimage.2005.07.060  0.302
2006 Argall BD, Saad ZS, Beauchamp MS. Simplified intersubject averaging on the cortical surface using SUMA. Human Brain Mapping. 27: 14-27. PMID 16035046 DOI: 10.1002/Hbm.20158  0.624
2003 Saad ZS, Ropella KM, DeYoe EA, Bandettini PA. The spatial extent of the BOLD response. Neuroimage. 19: 132-44. PMID 12781733 DOI: 10.1016/S1053-8119(03)00016-8  0.736
2003 Saad ZS, DeYoe EA, Ropella KM. Estimation of FMRI response delays. Neuroimage. 18: 494-504. PMID 12595202 DOI: 10.1016/S1053-8119(02)00024-1  0.637
2003 Bellgowan PS, Saad ZS, Bandettini PA. Understanding neural system dynamics through task modulation and measurement of functional MRI amplitude, latency, and width. Proceedings of the National Academy of Sciences of the United States of America. 100: 1415-9. PMID 12552093 DOI: 10.1073/pnas.0337747100  0.599
2002 Bandettini PA, Birn RM, Kelley D, Saad ZS. Dynamic nonlinearities in BOLD contrast: neuronal or hemodynamic? International Congress Series. 1235: 73-85. DOI: 10.1016/S0531-5131(02)00174-7  0.621
2001 Birn RM, Saad ZS, Bandettini PA. Spatial heterogeneity of the nonlinear dynamics in the FMRI BOLD response. Neuroimage. 14: 817-26. PMID 11554800 DOI: 10.1006/nimg.2001.0873  0.688
2001 Saad ZS, Ropella KM, Cox RW, DeYoe EA. Analysis and use of FMRI response delays. Human Brain Mapping. 13: 74-93. PMID 11346887 DOI: 10.1002/hbm.1026  0.666
2001 Kelley D, Birn R, Saad Z, Bandettini P. Voxel — Wise balloon model parameter estimation from BOLD time series Neuroimage. 13: 990. DOI: 10.1016/S1053-8119(01)92327-4  0.668
2001 Bellgowan PS, Saad Z, Bandettini P. Voxel-wise estimation of hemodynamic onset delays during a lexical decision task Neuroimage. 13: 503. DOI: 10.1016/S1053-8119(01)91846-4  0.533
2001 Cox R, Saad ZS. Direct estimation of DOF in FMRI regression analyses Neuroimage. 13: 101. DOI: 10.1016/S1053-8119(01)91444-2  0.32
2001 Saad ZS, Ropella KM, DeYoe EA, Bandettini PA. Extensive expansion of FMRI activation volume with scan averaging Neuroimage. 13: 1002. DOI: 10.1016/S1053-8119(01)90006-0  0.7
2000 Birn RM, Saad Z, Bandettini PA. Spatial distribution of the nonlinearity of the BOLD response Neuroimage. 11: S764. DOI: 10.1016/S1053-8119(00)91693-8  0.662
2000 Saad Z, Deyoe E, Ropella K. Estimation of FMRI response delays: impact of spectral leakage and time delay bias Annals of Biomedical Engineering. 28: S-43.  0.603
1999 Saad ZS, DeYoe EA, Ropella KM. In the variance of activation delays: Methodological or physiological? Neuroimage. 9: S89.  0.579
1997 Saad ZS, DeYoe EA, Ropella KM. Time delay estimates of FMRI signals: Efficient algorithm & estimate variance Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 1: 460-463.  0.586
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