Angela Walker - Related publications

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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Zhang T, Gygi SP, Paulo JA. Temporal Proteomic Profiling of SH-SY5Y Differentiation with Retinoic Acid Using FAIMS and Real-Time Searching. Journal of Proteome Research. PMID 33054241 DOI: 10.1021/acs.jproteome.0c00614   
2020 Bosch JA, Chen CL, Perrimon N. Proximity-dependent labeling methods for proteomic profiling in living cells: An update. Wiley Interdisciplinary Reviews. Developmental Biology. e392. PMID 32909689 DOI: 10.1002/wdev.392   
2020 Will JM, Erbacher C, Sperling M, Karst U. A mass spectrometry-based approach gives new insight into organotin-protein interactions. Metallomics : Integrated Biometal Science. PMID 32930317 DOI: 10.1039/d0mt00171f   
2020 Winkler R. ProtyQuant: Comparing label-free shotgun proteomics datasets using accumulated peptide probabilities. Journal of Proteomics. 230: 103985. PMID 32956841 DOI: 10.1016/j.jprot.2020.103985   
2020 Panda A, Rangani J, Parida AK. Comprehensive proteomic analysis revealing multifaceted regulatory network of the xero-halophyte Haloxylon salicornicum involved in salt tolerance. Journal of Biotechnology. 324: 143-161. PMID 33068696 DOI: 10.1016/j.jbiotec.2020.10.011   
2020 Cho KF, Branon TC, Udeshi ND, Myers SA, Carr SA, Ting AY. Proximity labeling in mammalian cells with TurboID and split-TurboID. Nature Protocols. PMID 33139955 DOI: 10.1038/s41596-020-0399-0   
2020 Kraus A, Weskamp M, Zierles J, Balzer M, Busch R, Eisfeld J, Lambertz J, Nowaczyk MM, Narberhaus F. Arginine-Rich Small Proteins with a Domain of Unknown Function, DUF1127, Play a Role in Phosphate and Carbon Metabolism of Agrobacterium tumefaciens. Journal of Bacteriology. 202. PMID 33093235 DOI: 10.1128/JB.00309-20   
2020 Oi C, Mochrie SGJ, Horrocks MH, Regan L. PAINT using proteins: A new brush for super-resolution artists. Protein Science : a Publication of the Protein Society. PMID 32949055 DOI: 10.1002/pro.3953   
2020 Liu YS, Matabaro E, Gao XD, Fujita M. Selecting cells expressing high levels of recombinant proteins using the GPI-anchored protein with selenocysteine system. Journal of Bioscience and Bioengineering. PMID 33158753 DOI: 10.1016/j.jbiosc.2020.10.004   
2020 Umstead A, Soliman AS, Lamp J, Vega IE. Validation of recombinant human protein purified from bacteria: an important step to increase scientific rigor. Analytical Biochemistry. 113999. PMID 33098768 DOI: 10.1016/j.ab.2020.113999   
2020 Pino LK, Rose J, O'Broin A, Shah S, Schilling B. Emerging mass spectrometry-based proteomics methodologies for novel biomedical applications. Biochemical Society Transactions. PMID 33079175 DOI: 10.1042/BST20191091   
2020 Navarrete-Perea J, Gygi SP, Paulo JA. Growth media selection alters the proteome profiles of three model microorganisms. Journal of Proteomics. 231: 104006. PMID 33038513 DOI: 10.1016/j.jprot.2020.104006   
2020 Valdez-Sinon AN, Gokhale A, Faundez V, Bassell GJ. Protocol for Immuno-Enrichment of FLAG-Tagged Protein Complexes. Star Protocols. 1: 100083. PMID 33111116 DOI: 10.1016/j.xpro.2020.100083   
2020 Ferro ES, Gewehr MCF, Navon A. Thimet Oligopeptidase Biochemical and Biological Significances: Past, Present, and Future Directions. Biomolecules. 10. PMID 32847123 DOI: 10.3390/biom10091229   
2020 Siau JW, Nonis S, Chee S, Koh LQ, Ferrer FJ, Brown CJ, Ghadessy FJ. Directed co-evolution of interacting protein-peptide pairs by compartmentalized two-hybrid replication (C2HR). Nucleic Acids Research. PMID 33104786 DOI: 10.1093/nar/gkaa933   
2020 Zhang X, Liu X, Li F, Yue X. The Differential Composition of Whey Proteomes in Hu Sheep Colostrum and Milk during Different Lactation Periods. Animals : An Open Access Journal From Mdpi. 10. PMID 33019658 DOI: 10.3390/ani10101784   
2020 Li J, Gao M, Gabriel DW, Liang W, Song L. Secretome-Wide Analysis of Lysine Acetylation in f. sp. Provides Novel Insights Into Infection-Related Proteins. Frontiers in Microbiology. 11: 559440. PMID 33013791 DOI: 10.3389/fmicb.2020.559440   
2020 Hegazy M, Cohen-Barak E, Koetsier JL, Najor NA, Arvanitis C, Sprecher E, Green KJ, Godsel LM. Proximity Ligation Assay for Detecting Protein-Protein Interactions and Protein Modifications in Cells and Tissues in Situ. Current Protocols in Cell Biology. 89: e115. PMID 33044803 DOI: 10.1002/cpcb.115   
2020 Park S, Jang J, Choi MD, Shin YA, Schutzler S, Azhar G, Ferrando AA, Wolfe RR, Kim IY. The Anabolic Response to Dietary Protein Is Not Limited by the Maximal Stimulation of Protein Synthesis in Healthy Older Adults: A Randomized Crossover Trial. Nutrients. 12. PMID 33114585 DOI: 10.3390/nu12113276   
2020 Liu S, Kang Y, Zhang C, Lou Y, Li X, Lu L, Qi Z, Jian H, Zhou H. Isobaric Tagging for Relative and Absolute Protein Quantification (iTRAQ)-Based Quantitative Proteomics Analysis of Differentially Expressed Proteins 1 Week After Spinal Cord Injury in a Rat Model. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 26: e924266. PMID 33144554 DOI: 10.12659/MSM.924266   
2020 Vinod V, Pushkaran AC, Anil Kumar V, Mohan CG, Biswas R. Interaction mechanism of Mycobacterium tuberculosis GroEL2 protein with macrophage Lectin-like, oxidized low-density lipoprotein Receptor-1: An integrated computational and experimental study. Biochimica Et Biophysica Acta. General Subjects. 129758. PMID 33031906 DOI: 10.1016/j.bbagen.2020.129758   
2020 Cao X, Wang Y, Rogers J, Hartson S, Kanost MR, Jiang H. Changes in composition and levels of hemolymph proteins during metamorphosis of Manduca sexta. Insect Biochemistry and Molecular Biology. 103489. PMID 33096211 DOI: 10.1016/j.ibmb.2020.103489   
2020 Masuda T, Mori A, Ito S, Ohtsuki S. Quantitative and targeted proteomics-based identification and validation of drug efficacy biomarkers. Drug Metabolism and Pharmacokinetics. PMID 33097418 DOI: 10.1016/j.dmpk.2020.09.006   
2020 Ngcala MG, Goche T, Brown AP, Chivasa S, Ngara R. Heat Stress Triggers Differential Protein Accumulation in the Extracellular Matrix of Sorghum Cell Suspension Cultures. Proteomes. 8. PMID 33105781 DOI: 10.3390/proteomes8040029   
2020 Trueba-Santiso A, Wasmund K, Soder-Walz JM, Marco-Urrea E, Adrian L. Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in Strain BRE15M. Journal of Proteome Research. PMID 32975419 DOI: 10.1021/acs.jproteome.0c00569   
2020 Bai S, Chaurasiya AH, Banarjee R, Walke PB, Rashid F, Unnikrishnan AG, Kulkarni MJ. CD44, a Predominant Protein in Methylglyoxal-Induced Secretome of Muscle Cells, is Elevated in Diabetic Plasma. Acs Omega. 5: 25016-25028. PMID 33043179 DOI: 10.1021/acsomega.0c01318   
2020 Stadmiller SS, Aguilar JS, Parnham S, Pielak GJ. Protein-Peptide Binding Energetics under Crowded Conditions. The Journal of Physical Chemistry. B. PMID 32936642 DOI: 10.1021/acs.jpcb.0c05578   
2020 Aponte-Ubillus JJ, Barajas D, Sterling H, Aghajanirefah A, Bardliving C, Peltier J, Shamlou P, Roy M, Gold D. Proteome profiling and vector yield optimization in a recombinant adeno-associated virus-producing yeast model. Microbiologyopen. e1136. PMID 33166081 DOI: 10.1002/mbo3.1136   
2020 Liu SY, Yuan D, Sun RJ, Zhu JJ, Shan NN. Significant reductions in apoptosis-related proteins (HSPA6, HSPA8, ITGB3, YWHAH, and PRDX6) are involved in immune thrombocytopenia. Journal of Thrombosis and Thrombolysis. PMID 33047245 DOI: 10.1007/s11239-020-02310-5   
2020 Saylor K, Waldman A, Gillam F, Zhang C. Multi-epitope insert modulates solubility-based and chromatographic purification of human papilloma virus 16 L1-based vaccine without inhibiting virus-like particle assembly. Journal of Chromatography. A. 1631: 461567. PMID 32980800 DOI: 10.1016/j.chroma.2020.461567   
2020 Sigdel TK, Piehowski PD, Roy S, Liberto J, Hansen JR, Swensen AC, Zhao R, Zhu Y, Rashmi P, Schroeder A, Damm I, Sur S, Luo J, Yang Y, Qian WJ, ... , et al. Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney. Frontiers in Medicine. 7: 499. PMID 33072769 DOI: 10.3389/fmed.2020.00499   
2020 Pu L, Shahzad Q, Chen F, Yao S, Tang Y, Chen D, Yu K, Xie L, Xu H, Zhang M, Lu Y. Proteomic analysis demonstrates that parthenogenetically activated swamp buffalo embryos have dysregulated energy metabolism. Reproduction in Domestic Animals = Zuchthygiene. PMID 33031588 DOI: 10.1111/rda.13838   
2020 Chauhan V, Vuong NQ, Bahia S, Nazemof N, Kumarathasan P. In vitro Exposure of Human Lens Epithelial Cells to X-rays at Varied Dose-Rates Initiates Protein Level Changes Relevant to Cataractogenesis. International Journal of Radiation Biology. 1-28. PMID 33164603 DOI: 10.1080/09553002.2020.1846819   
2020 Mirela-Bota P, Aguirre-Plans J, Meseguer A, Galletti C, Segura J, Planas-Iglesias J, Garcia-Garcia J, Guney E, Oliva B, Fernandez-Fuentes N. Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data. Journal of Molecular Biology. PMID 32976910 DOI: 10.1016/j.jmb.2020.09.015   
2020 Klimpel A, Stillger K, Wiederstein JL, Krüger M, Neundorf I. Cell-permeable CaaX-peptides affect K-Ras downstream signaling and promote cell death in cancer cells. The Febs Journal. PMID 33112492 DOI: 10.1111/febs.15612   
2020 Wang J, Zhao X, Hong R, Wang J. USP26 deubiquitinates androgen receptor (AR) in the maintenance of sperm maturation and spermatogenesis through the androgen receptor signaling pathway. Advances in Clinical and Experimental Medicine : Official Organ Wroclaw Medical University. PMID 33064378 DOI: 10.17219/acem/123355   
2020 David S, Magram Klaiman M, Shpigelman A, Lesmes U. Addition of Anionic Polysaccharide Stabilizers Modulates In Vitro Digestive Proteolysis of a Chocolate Milk Drink in Adults and Children. Foods (Basel, Switzerland). 9. PMID 32906813 DOI: 10.3390/foods9091253   
2020 Gaynor AS, Chen W. Conditional Protein Rescue by Binding-Induced Protective Shielding. Acs Synthetic Biology. PMID 33025786 DOI: 10.1021/acssynbio.0c00367   
2020 Wang Y, Tibbetts SM, Berrue F, McGinn PJ, MacQuarrie SP, Puttaswamy A, Patelakis S, Schmidt D, Melanson R, MacKenzie SE. A Rat Study to Evaluate the Protein Quality of Three Green Microalgal Species and the Impact of Mechanical Cell Wall Disruption. Foods (Basel, Switzerland). 9. PMID 33114413 DOI: 10.3390/foods9111531   
2020 Pritišanac I, Zarin T, Forman-Kay JD, Moses AM. Whence Blobs? Phylogenetics of functional protein condensates. Biochemical Society Transactions. PMID 32985656 DOI: 10.1042/BST20200355   
2020 Deighan WI, Winton VJ, Melani RD, Anderson LC, McGee JP, Schachner LF, Barnidge D, Murray D, Alexander HD, Gibson DS, Deery MJ, McNicholl FP, McLaughlin J, Kelleher NL, Thomas PM. Development of novel methods for non-canonical myeloma protein analysis with an innovative adaptation of immunofixation electrophoresis, native top-down mass spectrometry, and middle-down de novo sequencing. Clinical Chemistry and Laboratory Medicine. PMID 33079696 DOI: 10.1515/cclm-2020-1072   
2020 Ham YH, Chan KKJ, Madej D, Lam H, Chan W. Proteomics Study of DNA-Protein Crosslinks in Methylmethanesulfonate and Fe-EDTA-Exposed Human Cells. Chemical Research in Toxicology. PMID 33104331 DOI: 10.1021/acs.chemrestox.0c00289   
2020 Attermann AS, Barra C, Reynisson B, Schultz HS, Leurs U, Lamberth K, Nielsen M. Improved prediction of HLA antigen presentation hotspots: Applications for immunogenicity risk assessment of therapeutic proteins. Immunology. PMID 33010039 DOI: 10.1111/imm.13274   
2020 Samodova D, Hosfield CM, Cramer CN, Giuli MV, Cappellini E, Franciosa G, Rosenblatt M, Kelstrup CD, Olsen JV. ProAlanase is an effective alternative to trypsin for proteomics applications and disulfide bond mapping. Molecular & Cellular Proteomics : McP. PMID 33020190 DOI: 10.1074/mcp.TIR120.002129   
2020 Xu F, Earp JE, Vadiveloo M, Adami A, Delmonico MJ, Lofgren IE, Greaney ML. The Relationships between Total Protein Intake, Protein Sources, Physical Activity, and Lean Mass in a Representative Sample of the US Adults. Nutrients. 12. PMID 33076369 DOI: 10.3390/nu12103151   
2020 Liu XR, Rempel DL, Gross ML. Protein higher-order-structure determination by fast photochemical oxidation of proteins and mass spectrometry analysis. Nature Protocols. PMID 33169002 DOI: 10.1038/s41596-020-0396-3   
2020 Li N, Li J, Desiderio DM, Zhan X. SILAC quantitative proteomics analysis of ivermectin-related proteomic profiling and molecular network alterations in human ovarian cancer cells. Journal of Mass Spectrometry : Jms. e4659. PMID 33047383 DOI: 10.1002/jms.4659   
2020 Pavlikova N, Sramek J, Jelinek M, Halada P, Kovar J. Markers of acute toxicity of DDT exposure in pancreatic beta-cells determined by a proteomic approach. Plos One. 15: e0229430. PMID 33104727 DOI: 10.1371/journal.pone.0229430   
2020 Tan F, Sun N, Zhang L, Wu J, Xiao S, Tan Q, Uversky VN, Liu Y. Functional characterization of an unknown soybean intrinsically disordered protein in vitro and in Escherichia coli. International Journal of Biological Macromolecules. PMID 33137381 DOI: 10.1016/j.ijbiomac.2020.10.211   
2020 Yang K, Zeng L, Ge A, Pan X, Bao T, Long Z, Tong Q, Yuan M, Zhu X, Ge J, Huang Z. Integrating systematic biological and proteomics strategies to explore the pharmacological mechanism of danshen yin modified on atherosclerosis. Journal of Cellular and Molecular Medicine. PMID 33140562 DOI: 10.1111/jcmm.15979