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Nacho Molina - Publications

Affiliations: 
2016- Institut de génétique et de biologie moléculaire et cellulaire, France, Illkirch-Graffenstaden, France 
Website:
http://www.igbmc.fr/molina/
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Sexton T, Platania A, Erb C, Barbieri M, Molcrette B, Grandgirard E, de Kort M, Meaburn K, Taylor T, Shchuka V, Kocanova S, Oliveira G, Mitchell J, Soutoglou E, Lenstra T, ... Molina N, et al. Competition between transcription and loop extrusion modulates promoter and enhancer dynamics. Research Square. PMID 37645793 DOI: 10.21203/rs.3.rs-3164817/v1  0.346
2023 Jiménez S, Schreiber V, Mercier R, Gradwohl G, Molina N. Characterization of cell-fate decision landscapes by estimating transcription factor dynamics. Cell Reports Methods. 3: 100512. PMID 37533652 DOI: 10.1016/j.crmeth.2023.100512  0.355
2023 Platania A, Erb C, Barbieri M, Molcrette B, Grandgirard E, de Kort MA, Meaburn K, Taylor T, Shchuka VM, Kocanova S, Monteiro Oliveira G, Mitchell JA, Soutoglou E, Lenstra TL, Molina N, et al. Competition between transcription and loop extrusion modulates promoter and enhancer dynamics. Biorxiv : the Preprint Server For Biology. PMID 37162887 DOI: 10.1101/2023.04.25.538222  0.343
2021 Sarnataro S, Riba A, Molina N. Regulation of transcription reactivation dynamics exiting mitosis. Plos Computational Biology. 17: e1009354. PMID 34606497 DOI: 10.1371/journal.pcbi.1009354  0.377
2020 Cattenoz PB, Sakr R, Pavlidaki A, Delaporte C, Riba A, Molina N, Hariharan N, Mukherjee T, Giangrande A. Temporal specificity and heterogeneity of Drosophila immune cells. The Embo Journal. e104486. PMID 32162708 DOI: 10.15252/Embj.2020104486  0.321
2020 Zambrano S, Loffreda A, Carelli E, Stefanelli G, Colombo F, Bertrand E, Tacchetti C, Agresti A, Bianchi ME, Molina N, Mazza D. First Responders Shape a Prompt and Sharp NF-κB-Mediated Transcriptional Response to TNF-α Iscience. 23: 101529. DOI: 10.1016/J.Isci.2020.101529  0.413
2019 Piccand J, Vagne C, Blot F, Meunier A, Beucher A, Strasser P, Lund ML, Ghimire S, Nivlet L, Lapp C, Petersen N, Engelstoft MS, Thibault-Carpentier C, Keime C, Correa SJ, ... ... Molina N, et al. Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while repressing genetic programs controlling serotonin production. Molecular Metabolism. 29: 24-39. PMID 31668390 DOI: 10.1016/J.Molmet.2019.08.007  0.321
2019 Conic S, Desplancq D, Ferrand A, Molina N, Weiss E, Tora L. Visualization of Endogenous Transcription Factors in Single Cells Using an Antibody Electroporation-Based Imaging Approach. Methods in Molecular Biology (Clifton, N.J.). 2038: 209-221. PMID 31407287 DOI: 10.1007/978-1-4939-9674-2_14  0.324
2018 Garmendia-Torres C, Tassy O, Matifas A, Molina N, Charvin G. Multiple inputs ensure yeast cell size homeostasis during cell cycle progression. Elife. 7. PMID 29972352 DOI: 10.7554/Elife.34025  0.319
2018 Conic S, Desplancq D, Ferrand A, Fischer V, Heyer V, Reina San Martin B, Pontabry J, Oulad-Abdelghani M, Babu N K, Wright GD, Molina N, Weiss E, Tora L. Imaging of native transcription factors and histone phosphorylation at high resolution in live cells. The Journal of Cell Biology. PMID 29440513 DOI: 10.1083/Jcb.201709153  0.353
2018 Wang J, Symul L, Yeung J, Gobet C, Sobel J, Lück S, Westermark PO, Molina N, Naef F. Circadian clock-dependent and -independent posttranscriptional regulation underlies temporal mRNA accumulation in mouse liver. Proceedings of the National Academy of Sciences of the United States of America. PMID 29432155 DOI: 10.1073/Pnas.1715225115  0.584
2016 Gotic I, Omidi S, Fleury-Olela F, Molina N, Naef F, Schibler U. Temperature regulates splicing efficiency of the cold-inducible RNA-binding protein gene Cirbp. Genes & Development. PMID 27633015 DOI: 10.1101/Gad.287094.116  0.598
2016 Bischofberger M, Iacovache I, Boss D, Naef F, van der Goot FG, Molina N. Revealing Assembly of a Pore-Forming Complex Using Single-Cell Kinetic Analysis and Modeling. Biophysical Journal. 110: 1574-81. PMID 27074682 DOI: 10.1016/J.Bpj.2016.02.035  0.546
2015 Zambrano S, Bianchi ME, Agresti A, Molina N. Interplay between stochasticity and negative feedback leads to pulsed dynamics and distinct gene activity patterns. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 022711. PMID 26382436 DOI: 10.1103/Physreve.92.022711  0.371
2015 Zoller B, Nicolas D, Molina N, Naef F. Structure of silent transcription intervals and noise characteristics of mammalian genes. Molecular Systems Biology. 11: 823. PMID 26215071 DOI: 10.15252/Msb.20156257  0.667
2014 Bonhoure N, Bounova G, Bernasconi D, Praz V, Lammers F, Canella D, Willis IM, Herr W, Hernandez N, Delorenzi M, Deplancke B, Desvergne B, Guex N, Naef F, Rougemont J, ... ... Molina N, et al. Quantifying ChIP-seq data: A spiking method providing an internal reference for sample-to-sample normalization Genome Research. 24: 1157-1168. PMID 24709819 DOI: 10.1101/Gr.168260.113  0.614
2014 Gilardi F, Migliavacca E, Naldi A, Baruchet M, Canella D, Le Martelot G, Guex N, Desvergne B, Delorenzi M, Deplancke B, Herr W, Naef F, Rougemont J, Schibler U, Andersin T, ... ... Molina N, et al. Genome-Wide Analysis of SREBP1 Activity around the Clock Reveals Its Combined Dependency on Nutrient and Circadian Signals Plos Genetics. 10. PMID 24603613 DOI: 10.1371/journal.pgen.1004155  0.609
2013 Molina N, Suter DM, Cannavo R, Zoller B, Gotic I, Naef F. Stimulus-induced modulation of transcriptional bursting in a single mammalian gene. Proceedings of the National Academy of Sciences of the United States of America. 110: 20563-8. PMID 24297917 DOI: 10.1073/Pnas.1312310110  0.639
2012 Stratmann M, Suter DM, Molina N, Naef F, Schibler U. Circadian Dbp transcription relies on highly dynamic BMAL1-CLOCK interaction with E boxes and requires the proteasome. Molecular Cell. 48: 277-87. PMID 22981862 DOI: 10.1016/J.Molcel.2012.08.012  0.649
2012 Arnold P, Erb I, Pachkov M, Molina N, Van Nimwegen E. MotEvo: Integrated bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences Bioinformatics. 28: 487-494. PMID 22334039 DOI: 10.1093/Bioinformatics/Btr695  0.629
2011 Suter DM, Molina N, Naef F, Schibler U. Origins and consequences of transcriptional discontinuity. Current Opinion in Cell Biology. 23: 657-62. PMID 21963300 DOI: 10.1016/J.Ceb.2011.09.004  0.653
2011 Suter DM, Molina N, Gatfield D, Schneider K, Schibler U, Naef F. Mammalian genes are transcribed with widely different bursting kinetics. Science (New York, N.Y.). 332: 472-4. PMID 21415320 DOI: 10.1126/Science.1198817  0.654
2009 Molina N, van Nimwegen E. Scaling laws in functional genome content across prokaryotic clades and lifestyles Trends in Genetics. 25: 243-247. PMID 19457568 DOI: 10.1016/J.Tig.2009.04.004  0.622
2008 Molina N, van Nimwegen E. The evolution of domain-content in bacterial genomes Biology Direct. 3. PMID 19077245 DOI: 10.1186/1745-6150-3-51  0.603
2008 Molina N, Van Nimwegen E. Universal patterns of purifying selection at noncoding positions in bacteria Genome Research. 18: 148-160. PMID 18032729 DOI: 10.1101/Gr.6759507  0.664
2007 Pachkov M, Erb I, Molina N, van Nimwegen E. SwissRegulon: A database of genome-wide annotations of regulatory sites Nucleic Acids Research. 35. PMID 17130146 DOI: 10.1093/Nar/Gkl857  0.624
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