| Year |
Citation |
Score |
| 2013 |
Tilgner H, Raha D, Habegger L, Mohiuddin M, Gerstein M, Snyder M. Accurate identification and analysis of human mRNA isoforms using deep long read sequencing. G3 (Bethesda, Md.). 3: 387-97. PMID 23450794 DOI: 10.1534/G3.112.004812 |
0.405 |
|
| 2013 |
Huang XA, Yin H, Sweeney S, Raha D, Snyder M, Lin H. A major epigenetic programming mechanism guided by piRNAs. Developmental Cell. 24: 502-16. PMID 23434410 DOI: 10.1016/J.Devcel.2013.01.023 |
0.402 |
|
| 2012 |
Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, ... ... Raha D, et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Research. 22: 1813-31. PMID 22955991 DOI: 10.1101/Gr.136184.111 |
0.349 |
|
| 2012 |
Kundaje A, Kyriazopoulou-Panagiotopoulou S, Libbrecht M, Smith CL, Raha D, Winters EE, Johnson SM, Snyder M, Batzoglou S, Sidow A. Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements. Genome Research. 22: 1735-47. PMID 22955985 DOI: 10.1101/Gr.136366.111 |
0.41 |
|
| 2012 |
Charos AE, Reed BD, Raha D, Szekely AM, Weissman SM, Snyder M. A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells. Genome Research. 22: 1668-79. PMID 22955979 DOI: 10.1101/Gr.127761.111 |
0.486 |
|
| 2012 |
Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, Alexander R, Min R, Alves P, Abyzov A, Addleman N, Bhardwaj N, ... ... Raha D, et al. Architecture of the human regulatory network derived from ENCODE data. Nature. 489: 91-100. PMID 22955619 DOI: 10.1038/Nature11245 |
0.444 |
|
| 2012 |
Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, ... ... Raha D, et al. Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell. 148: 84-98. PMID 22265404 DOI: 10.1016/J.Cell.2011.12.014 |
0.432 |
|
| 2011 |
Yin H, Sweeney S, Raha D, Snyder M, Lin H. A high-resolution whole-genome map of key chromatin modifications in the adult Drosophila melanogaster. Plos Genetics. 7: e1002380. PMID 22194694 DOI: 10.1371/Journal.Pgen.1002380 |
0.465 |
|
| 2011 |
Rozowsky J, Abyzov A, Wang J, Alves P, Raha D, Harmanci A, Leng J, Bjornson R, Kong Y, Kitabayashi N, Bhardwaj N, Rubin M, Snyder M, Gerstein M. AlleleSeq: analysis of allele-specific expression and binding in a network framework. Molecular Systems Biology. 7: 522. PMID 21811232 DOI: 10.1038/Msb.2011.54 |
0.398 |
|
| 2011 |
Wontakal SN, Guo X, Will B, Shi M, Raha D, Mahajan MC, Weissman S, Snyder M, Steidl U, Zheng D, Skoultchi AI. A large gene network in immature erythroid cells is controlled by the myeloid and B cell transcriptional regulator PU.1. Plos Genetics. 7: e1001392. PMID 21695229 DOI: 10.1371/Journal.Pgen.1001392 |
0.413 |
|
| 2011 |
Pérez-Lluch S, Blanco E, Carbonell A, Raha D, Snyder M, Serras F, Corominas M. Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing. Nucleic Acids Research. 39: 4628-39. PMID 21310711 DOI: 10.1093/Nar/Gkq1322 |
0.379 |
|
| 2010 |
Raha D, Hong M, Snyder M. ChIP-Seq: a method for global identification of regulatory elements in the genome. Current Protocols in Molecular Biology. Unit 21.19.1-14. PMID 20583098 DOI: 10.1002/0471142727.Mb2119S91 |
0.39 |
|
| 2010 |
Moqtaderi Z, Wang J, Raha D, White RJ, Snyder M, Weng Z, Struhl K. Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells. Nature Structural & Molecular Biology. 17: 635-40. PMID 20418883 DOI: 10.1038/Nsmb.1794 |
0.44 |
|
| 2010 |
Wu JQ, Habegger L, Noisa P, Szekely A, Qiu C, Hutchison S, Raha D, Egholm M, Lin H, Weissman S, Cui W, Gerstein M, Snyder M. Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing. Proceedings of the National Academy of Sciences of the United States of America. 107: 5254-9. PMID 20194744 DOI: 10.1073/Pnas.0914114107 |
0.345 |
|
| 2010 |
Zhong M, Niu W, Lu ZJ, Sarov M, Murray JI, Janette J, Raha D, Sheaffer KL, Lam HY, Preston E, Slightham C, Hillier LW, Brock T, Agarwal A, Auerbach R, et al. Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response. Plos Genetics. 6: e1000848. PMID 20174564 DOI: 10.1371/Journal.Pgen.1000848 |
0.45 |
|
| 2010 |
Raha D, Wang Z, Moqtaderi Z, Wu L, Zhong G, Gerstein M, Struhl K, Snyder M. Close association of RNA polymerase II and many transcription factors with Pol III genes. Proceedings of the National Academy of Sciences of the United States of America. 107: 3639-44. PMID 20139302 DOI: 10.1073/Pnas.0911315106 |
0.423 |
|
| 2009 |
Steiner LA, Maksimova Y, Schulz V, Wong C, Raha D, Mahajan MC, Weissman SM, Gallagher PG. Chromatin architecture and transcription factor binding regulate expression of erythrocyte membrane protein genes. Molecular and Cellular Biology. 29: 5399-412. PMID 19687298 DOI: 10.1128/Mcb.00777-09 |
0.446 |
|
| 2008 |
Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science (New York, N.Y.). 320: 1344-9. PMID 18451266 DOI: 10.1126/Science.1158441 |
0.418 |
|
| 1995 |
Riesgo-Escovar J, Raha D, Carlson JR. Requirement for a phospholipase C in odor response: Overlap between olfaction and vision in Drosophila Proceedings of the National Academy of Sciences of the United States of America. 92: 2864-2868. PMID 7708738 DOI: 10.1073/Pnas.92.7.2864 |
0.452 |
|
| 1994 |
Raha D, Carlson J. OS9: A novel olfactory gene of Drosophila expressed in two olfactory organs Journal of Neurobiology. 25: 169-184. PMID 8021646 DOI: 10.1002/Neu.480250208 |
0.498 |
|
| 1990 |
Raha D, Nguyen QD, Garen A. Molecular and developmental analyses of the protein encoded by the Drosophila gene ectodermal. Developmental Genetics. 11: 310-7. PMID 2090376 DOI: 10.1002/Dvg.1020110410 |
0.384 |
|
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