Marija Kundakovic, Ph.D. - Related publications

Columbia University, New York, NY 
behavioral/psychiatric epigenetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Jiang J, Zhu J, Liu Q, Zhang T, Wen J, Xia J, Deng Y. Role of DNA methylation-related chromatin remodeling in aryl hydrocarbon receptor-dependent regulation of T-2 toxin highly inducible Cytochrome P450 1A4 gene. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 35: e21469. PMID 33788981 DOI: 10.1096/fj.202002570RR   
2021 Li Y, Chen X, Lu C. The interplay between DNA and histone methylation: molecular mechanisms and disease implications. Embo Reports. e51803. PMID 33844406 DOI: 10.15252/embr.202051803   
2021 Li K, Han J, Wang Z. Histone modifications centric-regulation in osteogenic differentiation. Cell Death Discovery. 7: 91. PMID 33941771 DOI: 10.1038/s41420-021-00472-6   
2021 Salim D, Bradford WD, Rubinstein B, Gerton JL. DNA replication, transcription, and H3K56 acetylation regulate copy number and stability at tandem repeats. G3 (Bethesda, Md.). PMID 33729510 DOI: 10.1093/g3journal/jkab082   
2021 Rossmann MP, Zon LI. 'Enhancing' red cell fate through epigenetic mechanisms. Current Opinion in Hematology. PMID 33741760 DOI: 10.1097/MOH.0000000000000654   
2021 Zhou S, Zeng H, Huang J, Lei L, Tong X, Li S, Zhou Y, Guo H, Khan M, Luo L, Xiao R, Chen J, Zeng Q. Epigenetic Regulation of Melanogenesis. Ageing Research Reviews. 101349. PMID 33984527 DOI: 10.1016/j.arr.2021.101349   
2021 Smith AR, Smith RG, Macdonald R, Marzi SJ, Burrage J, Troakes C, Al-Sarraj S, Mill J, Lunnon K. The histone modification H3K4me3 is altered at the locus in Alzheimer's disease brain. Future Science Oa. 7: FSO665. PMID 33815817 DOI: 10.2144/fsoa-2020-0161   
2021 Marchione AD, Thompson Z, Kathrein KL. DNA methylation and histone modifications are essential for regulation of stem cell formation and differentiation in zebrafish development. Briefings in Functional Genomics. PMID 33782688 DOI: 10.1093/bfgp/elab022   
2021 Morita K, Hatanaka Y, Ihashi S, Asano M, Miyamoto K, Matsumoto K. Symmetrically dimethylated histone H3R2 promotes global transcription during minor zygotic genome activation in mouse pronuclei. Scientific Reports. 11: 10146. PMID 33980975 DOI: 10.1038/s41598-021-89334-w   
2021 Lu YX, Regan JC, Eßer J, Drews LF, Weinseis T, Stinn J, Hahn O, Miller RA, Grönke S, Partridge L. A TORC1-histone axis regulates chromatin organisation and non-canonical induction of autophagy to ameliorate ageing. Elife. 10. PMID 33988501 DOI: 10.7554/eLife.62233   
2021 Tomikawa J, Miyamoto K. Structural alteration of the nucleus for the reprogramming of gene expression. The Febs Journal. PMID 33891358 DOI: 10.1111/febs.15894   
2021 Datta M, Staszewski O. Hdac1 and Hdac2 are essential for physiological maturation of a Cx3cr1 expressing subset of T-lymphocytes. Bmc Research Notes. 14: 135. PMID 33849645 DOI: 10.1186/s13104-021-05551-6   
2021 Butel N, Yu A, Le Masson I, Borges F, Elmayan T, Taochy C, Gursanscky NR, Cao J, Bi S, Sawyer A, Carroll BJ, Vaucheret H. Contrasting epigenetic control of transgenes and endogenous genes promotes post-transcriptional transgene silencing in Arabidopsis. Nature Communications. 12: 2787. PMID 33986281 DOI: 10.1038/s41467-021-22995-3   
2021 Garmpis N, Damaskos C, Garmpi A, Georgakopoulou VE, Sarantis P, Antoniou EA, Karamouzis MV, Nonni A, Schizas D, Diamantis E, Koustas E, Farmaki P, Syllaios A, Patsouras A, Kontzoglou K, et al. Histone Deacetylase Inhibitors in the Treatment of Hepatocellular Carcinoma: Current Evidence and Future Opportunities. Journal of Personalized Medicine. 11. PMID 33809844 DOI: 10.3390/jpm11030223   
2021 Gan L, Wei Z, Yang Z, Li F, Wang Z. Updated Mechanisms of GCN5-The Monkey King of the Plant Kingdom in Plant Development and Resistance to Abiotic Stresses. Cells. 10. PMID 33922251 DOI: 10.3390/cells10050979   
2021 Xu H, Wu M, Ma X, Huang W, Xu Y. Function and Mechanism of Novel Histone Posttranslational Modifications in Health and Disease. Biomed Research International. 2021: 6635225. PMID 33763479 DOI: 10.1155/2021/6635225   
2021 Cai S, Quan S, Yang G, Chen M, Ye Q, Wang G, Yu H, Wang Y, Qiao S, Zeng X. Nutritional Status Impacts Epigenetic Regulation in Early Embryo Development: A Scoping Review. Advances in Nutrition (Bethesda, Md.). PMID 33873200 DOI: 10.1093/advances/nmab038   
2021 Talbert PB, Henikoff S. The Yin and Yang of Histone Marks in Transcription. Annual Review of Genomics and Human Genetics. PMID 33781079 DOI: 10.1146/annurev-genom-120220-085159   
2021 Li H, Chen JA, Ding QZ, Lu GY, Wu N, Su RB, Li F, Li J. Behavioral sensitization induced by methamphetamine causes differential alterations in gene expression and histone acetylation of the prefrontal cortex in rats. Bmc Neuroscience. 22: 24. PMID 33823794 DOI: 10.1186/s12868-021-00616-5   
2021 Espiritu D, Gribkova AK, Gupta S, Shaytan AK, Panchenko AR. Molecular Mechanisms of Oncogenesis through the Lens of Nucleosomes and Histones. The Journal of Physical Chemistry. B. PMID 33769808 DOI: 10.1021/acs.jpcb.1c00694   
2021 Segert JA, Gisselbrecht SS, Bulyk ML. Transcriptional Silencers: Driving Gene Expression with the Brakes On. Trends in Genetics : Tig. PMID 33712326 DOI: 10.1016/j.tig.2021.02.002   
2021 Meunier L, Hirsch TZ, Caruso S, Imbeaud S, Bayard Q, Roehrig A, Couchy G, Nault JC, Llovet JM, Blanc JF, Calderaro J, Zucman-Rossi J, Letouzé E. DNA Methylation Signatures Reveal the Diversity of Processes Remodeling Hepatocellular Carcinoma Methylomes. Hepatology (Baltimore, Md.). PMID 33713365 DOI: 10.1002/hep.31796   
2021 Gimeno-Valiente F, Riffo-Campos ÁL, Torres L, Tarazona N, Gambardella V, Cervantes A, López-Rodas G, Franco L, Castillo J. Epigenetic Mechanisms Are Involved in the Oncogenic Properties of in Colorectal Cancer. Cancers. 13. PMID 33801071 DOI: 10.3390/cancers13061433   
2021 Yamamoto-Fukuda T, Akiyama N, Kojima H. Super-enhancer Acquisition Drives FOXC2 Expression in Middle Ear Cholesteatoma. Journal of the Association For Research in Otolaryngology : Jaro. PMID 33861394 DOI: 10.1007/s10162-021-00801-7   
2021 Pinter S, Knodel F, Choudalakis M, Schnee P, Kroll C, Fuchs M, Broehm A, Weirich S, Roth M, Eisler SA, Zuber J, Jeltsch A, Rathert P. A functional LSD1 coregulator screen reveals a novel transcriptional regulatory cascade connecting R-loop homeostasis with epigenetic regulation. Nucleic Acids Research. PMID 33823549 DOI: 10.1093/nar/gkab180   
2021 Morrison EA, Baweja L, Poirier MG, Wereszczynski J, Musselman CA. Nucleosome composition regulates the histone H3 tail conformational ensemble and accessibility. Nucleic Acids Research. PMID 33856458 DOI: 10.1093/nar/gkab246   
2021 Tran TQ, MacAlpine HK, Tripuraneni V, Mitra S, MacAlpine DM, Hartemink AJ. Linking the dynamics of chromatin occupancy and transcription with predictive models. Genome Research. PMID 33893157 DOI: 10.1101/gr.267237.120   
2021 Singh DD, Verma R, Parimoo P, Sahu A, Kumar V, Upadhyay E, Yadav DK. Potential therapeutic relevance of CRISPR/Cas9 guided Epigenetic Regulations for Neuropsychiatric Disorders. Current Topics in Medicinal Chemistry. PMID 33739246 DOI: 10.2174/1568026621666210317154502   
2021 Shi J, Ma Y, Hua H, Liu Y, Li W, Yu H, Liu C. Dynamic Histone H3 Modifications Regulate Meiosis Initiation via Respiration. Frontiers in Cell and Developmental Biology. 9: 646214. PMID 33869198 DOI: 10.3389/fcell.2021.646214   
2021 Zhang B, Kim MY, Elliot G, Zhou Y, Zhao G, Li D, Lowdon RF, Gormley M, Kapidzic M, Robinson JF, McMaster MT, Hong C, Mazor T, Hamilton E, Sears RL, et al. Human placental cytotrophoblast epigenome dynamics over gestation and alterations in placental disease. Developmental Cell. PMID 33891899 DOI: 10.1016/j.devcel.2021.04.001   
2021 Cruz-Becerra G, Kadonaga JT. Reconstitution of Chromatin by Stepwise Salt Dialysis. Bio-Protocol. 11: e3977. PMID 33889671 DOI: 10.21769/BioProtoc.3977   
2021 Prado G, Kaestner CL, Licht JD, Bennett RL. Targeting epigenetic mechanisms to overcome venetoclax resistance. Biochimica Et Biophysica Acta. Molecular Cell Research. 1868: 119047. PMID 33945824 DOI: 10.1016/j.bbamcr.2021.119047   
2021 Zappacosta F, Wagner CD, Della Pietra A, Gerhart SV, Keenan K, Korenchuck S, Quinn CJ, Barbash O, McCabe MT, Annan RS. A Chemical Acetylation based Mass Spectrometry Platform for Histone Methylation Profiling. Molecular & Cellular Proteomics : McP. 100067. PMID 33775892 DOI: 10.1016/j.mcpro.2021.100067   
2021 de Almeida RF, Fernandes M, de Godoy LMF. An updated map of Trypanosoma cruzi histone post-translational modifications. Scientific Data. 8: 93. PMID 33767201 DOI: 10.1038/s41597-021-00818-w   
2021 Cole L, Kurscheid S, Nekrasov M, Domaschenz R, Vera DL, Dennis JH, Tremethick DJ. Multiple roles of H2A.Z in regulating promoter chromatin architecture in human cells. Nature Communications. 12: 2524. PMID 33953180 DOI: 10.1038/s41467-021-22688-x   
2021 Chen P, Li W, Li G. Structures and Functions of Chromatin Fibers. Annual Review of Biophysics. 50: 95-116. PMID 33957053 DOI: 10.1146/annurev-biophys-062920-063639   
2021 Jarome TJ, Perez GA, Webb WM, Hatch KM, Navabpour S, Musaus M, Farrell K, Hauser RM, McFadden T, Martin K, Butler AA, Wang J, Lubin FD. Ubiquitination of Histone H2B by Proteasome Subunit RPT6 Controls Histone Methylation Chromatin Dynamics During Memory Formation. Biological Psychiatry. PMID 33934885 DOI: 10.1016/j.biopsych.2020.12.029   
2021 Ren W, Fan H, Grimm SA, Kim JJ, Li L, Guo Y, Petell CJ, Tan XF, Zhang ZM, Coan JP, Yin J, Kim DI, Gao L, Cai L, Khudaverdyan N, et al. DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation. Nature Communications. 12: 2490. PMID 33941775 DOI: 10.1038/s41467-021-22665-4   
2021 Liscovitch-Brauer N, Montalbano A, Deng J, Méndez-Mancilla A, Wessels HH, Moss NG, Kung CY, Sookdeo A, Guo X, Geller E, Jaini S, Smibert P, Sanjana NE. Profiling the genetic determinants of chromatin accessibility with scalable single-cell CRISPR screens. Nature Biotechnology. PMID 33927415 DOI: 10.1038/s41587-021-00902-x   
2021 Min J, Liu K. Structures of chromatin modulators in complex with nucleosome. Current Opinion in Chemical Biology. 63: 105-114. PMID 33823458 DOI: 10.1016/j.cbpa.2021.02.018   
2021 Yi JZ, McGee JS. Epigenetic-modifying therapies: an emerging avenue for the treatment of inflammatory skin diseases. Experimental Dermatology. PMID 33752257 DOI: 10.1111/exd.14334   
2021 Sternbach S, West N, Singhal NK, Clements R, Basu S, Tripathi A, Dutta R, Freeman EJ, McDonough J. The BHMT-betaine methylation pathway epigenetically modulates oligodendrocyte maturation. Plos One. 16: e0250486. PMID 33975330 DOI: 10.1371/journal.pone.0250486   
2021 Angulo JC, Manini C, López JI, Pueyo A, Colás B, Ropero S. The Role of Epigenetics in the Progression of Clear Cell Renal Cell Carcinoma and the Basis for Future Epigenetic Treatments. Cancers. 13. PMID 33922974 DOI: 10.3390/cancers13092071   
2021 Shin HS, Lee Y, Shin MH, Cho SI, Zouboulis CC, Kim MK, Lee DH, Chung JH. Histone Deacetylase 1 Reduces Lipogenesis by Suppressing SREBP1 Transcription in Human Sebocyte Cell Line SZ95. International Journal of Molecular Sciences. 22. PMID 33922983 DOI: 10.3390/ijms22094477   
2021 Oki M, Masai H. Regulation of HP1 protein by phosphorylation during transcriptional repression and cell cycle. Journal of Biochemistry. PMID 33772590 DOI: 10.1093/jb/mvab040   
2021 Song Z, Yang L, Hu W, Yi J, Feng F, Zhu L. Effects of histone H4 hyperacetylation on inhibiting MMP2 and MMP9 in human amniotic epithelial cells and in premature rupture of fetal membranes. Experimental and Therapeutic Medicine. 21: 515. PMID 33815588 DOI: 10.3892/etm.2021.9946   
2021 Zhang L, Pilarowski G, Pich EM, Nakatani A, Dunlop J, Baba R, Matsuda S, Daini M, Hattori Y, Matsumoto S, Ito M, Kimura H, Bjornsson HT. Inhibition of KDM1A activity restores adult neurogenesis and improves hippocampal memory in a mouse model of Kabuki syndrome. Molecular Therapy. Methods & Clinical Development. 20: 779-791. PMID 33738331 DOI: 10.1016/j.omtm.2021.02.011   
2021 Zhou M, Abdali SH, Dilworth D, Liu L, Cole B, Malhan N, Ahkami AH, Winkler TE, Hollingsworth J, Sievert J, Dahlberg J, Hutmacher R, Madera M, Owiti JA, Hixson KK, et al. Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers. Journal of Visualized Experiments : Jove. PMID 33749685 DOI: 10.3791/61707   
2021 Zhou M, Abdali SH, Dilworth D, Liu L, Cole B, Malhan N, Ahkami AH, Winkler TE, Hollingsworth J, Sievert J, Dahlberg J, Hutmacher R, Madera M, Owiti JA, Hixson KK, et al. Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers. Journal of Visualized Experiments : Jove. PMID 33749685 DOI: 10.3791/61707   
2021 Fesquet D, Llères D, Grimaud C, Viganò C, Méchali F, Boulon S, Coux O, Bonne-Andrea C, Baldin V. The 20S proteasome activator PA28γ controls the compaction of chromatin. Journal of Cell Science. 134. PMID 33526472 DOI: 10.1242/jcs.257717