| Year |
Citation |
Score |
| 2023 |
Giambruno R, Zacco E, Ugolini C, Vandelli A, Mulroney L, D'Onghia M, Giuliani B, Criscuolo E, Castelli M, Clementi N, Clementi M, Mancini N, Bonaldi T, Gustincich S, Leonardi T, ... Tartaglia GG, et al. Unveiling the role of PUS7-mediated pseudouridylation in host protein interactions specific for the SARS-CoV-2 RNA genome. Molecular Therapy. Nucleic Acids. 34: 102052. PMID 38028201 DOI: 10.1016/j.omtn.2023.102052 |
0.386 |
|
| 2023 |
Schwarzl T, Sahadevan S, Lang B, Miladi M, Backofen R, Huber W, Hentze MW, Tartaglia GG. Improved discovery of RNA-binding protein binding sites in eCLIP data using DEWSeq. Nucleic Acids Research. PMID 37962298 DOI: 10.1093/nar/gkad998 |
0.308 |
|
| 2023 |
Rupert J, Monti M, Zacco E, Tartaglia GG. RNA sequestration driven by amyloid formation: the alpha synuclein case. Nucleic Acids Research. PMID 37870427 DOI: 10.1093/nar/gkad857 |
0.451 |
|
| 2023 |
Mangoni D, Simi A, Lau P, Armaos A, Ansaloni F, Codino A, Damiani D, Floreani L, Di Carlo V, Vozzi D, Persichetti F, Santoro C, Pandolfini L, Tartaglia GG, Sanges R, et al. LINE-1 regulates cortical development by acting as long non-coding RNAs. Nature Communications. 14: 4974. PMID 37591988 DOI: 10.1038/s41467-023-40743-7 |
0.3 |
|
| 2023 |
Mas AM, Goñi E, Ruiz de Los Mozos I, Arcas A, Statello L, González J, Blázquez L, Lee WTC, Gupta D, Sejas Á, Hoshina S, Armaos A, Tartaglia GG, Waga S, Ule J, et al. ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins. Nature Communications. 14: 4447. PMID 37488096 DOI: 10.1038/s41467-023-40105-3 |
0.35 |
|
| 2023 |
Crua Asensio N, Rizzieri S, Cuomo A, Tartaglia GG, Zacco E. An Optimized Quantitative Pull-Down Analysis of RNA-Binding Proteins Using Short Biotinylated RNA. Journal of Visualized Experiments : Jove. PMID 36876945 DOI: 10.3791/64923 |
0.482 |
|
| 2023 |
Colantoni A, Capauto D, Alfano V, D'Ambra E, D'Uva S, Tartaglia GG, Morlando M. FUS Alters circRNA Metabolism in Human Motor Neurons Carrying the ALS-Linked P525L Mutation. International Journal of Molecular Sciences. 24. PMID 36834591 DOI: 10.3390/ijms24043181 |
0.351 |
|
| 2023 |
Vandelli A, Arnal Segura M, Monti M, Fiorentino J, Broglia L, Colantoni A, Sanchez de Groot N, Torrent Burgas M, Armaos A, Tartaglia GG. The PRALINE database: protein and Rna humAn singLe nucleotIde variaNts in condEnsates. Bioinformatics (Oxford, England). 39. PMID 36592044 DOI: 10.1093/bioinformatics/btac847 |
0.463 |
|
| 2022 |
Delli Ponti R, Broglia L, Vandelli A, Armaos A, Burgas MT, Sanchez de Groot N, Tartaglia GG. A high-throughput approach to predict A-to-I effects on RNA structure indicates a change of double-stranded content in noncoding RNAs. Iubmb Life. PMID 36057100 DOI: 10.1002/iub.2673 |
0.421 |
|
| 2022 |
Vandelli A, Vocino G, Tartaglia GG. Phase Separation Drives SARS-CoV-2 Replication: A Hypothesis. Frontiers in Molecular Biosciences. 9: 893067. PMID 35647024 DOI: 10.3389/fmolb.2022.893067 |
0.438 |
|
| 2021 |
Grassmann G, Miotto M, Di Rienzo L, Salaris F, Silvestri B, Zacco E, Rosa A, Tartaglia GG, Ruocco G, Milanetti E. A Computational Approach to Investigate TDP-43 RNA-Recognition Motif 2 C-Terminal Fragments Aggregation in Amyotrophic Lateral Sclerosis. Biomolecules. 11. PMID 34944548 DOI: 10.3390/biom11121905 |
0.361 |
|
| 2021 |
Louka A, Bagnoli S, Rupert J, Esapa B, Tartaglia GG, Cellerino A, Pastore A, Terzibasi Tozzini E. New lessons on TDP-43 from old N. furzeri killifish. Aging Cell. 21: e13517. PMID 34939315 DOI: 10.1111/acel.13517 |
0.409 |
|
| 2021 |
Delli Ponti R, Tartaglia GG. Predicting RNA Secondary Structure Using In Vitro and In Vivo Data. Methods in Molecular Biology (Clifton, N.J.). 2404: 43-52. PMID 34694602 DOI: 10.1007/978-1-0716-1851-6_2 |
0.358 |
|
| 2021 |
Chatterji P, Williams PA, Whelan KA, Samper FC, Andres SF, Simon LA, Parham LR, Mizuno R, Lundsmith ET, Lee DS, Liang S, Wijeratne HS, Marti S, Chau L, Giroux V, ... ... Tartaglia GG, et al. Posttranscriptional regulation of colonic epithelial repair by RNA binding protein IMP1/IGF2BP1. Embo Reports. e53324. PMID 34231297 DOI: 10.15252/embr.202153324 |
0.403 |
|
| 2021 |
Monti M, Armaos A, Fantini M, Pastore A, Tartaglia GG. Aggregation is a Context-Dependent Constraint on Protein Evolution. Frontiers in Molecular Biosciences. 8: 678115. PMID 34222334 DOI: 10.3389/fmolb.2021.678115 |
0.367 |
|
| 2021 |
Lang B, Yang JS, Garriga-Canut M, Speroni S, Aschern M, Gili M, Hoffmann T, Tartaglia GG, Maurer SP. Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins. Nucleic Acids Research. PMID 34133714 DOI: 10.1093/nar/gkab490 |
0.423 |
|
| 2021 |
Armaos A, Colantoni A, Proietti G, Rupert J, Tartaglia GG. catRAPID omics v2.0: going deeper and wider in the prediction of protein-RNA interactions. Nucleic Acids Research. 49: W72-W79. PMID 34086933 DOI: 10.1093/nar/gkab393 |
0.46 |
|
| 2021 |
Temussi PA, Tartaglia GG, Pastore A. The seesaw between normal function and protein aggregation: How functional interactions may increase protein solubility. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 43: e2100031. PMID 33783021 DOI: 10.1002/bies.202100031 |
0.38 |
|
| 2020 |
Armaos A, Zacco E, Sanchez de Groot N, Tartaglia GG. RNA-protein interactions: Central players in coordination of regulatory networks. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2000118. PMID 33284474 DOI: 10.1002/bies.202000118 |
0.438 |
|
| 2020 |
Vandelli A, Monti M, Milanetti E, Armaos A, Rupert J, Zacco E, Bechara E, Delli Ponti R, Tartaglia GG. Structural analysis of SARS-CoV-2 genome and predictions of the human interactome. Nucleic Acids Research. PMID 33068416 DOI: 10.1093/nar/gkaa864 |
0.384 |
|
| 2020 |
Louka A, Zacco E, Temussi PA, Tartaglia GG, Pastore A. RNA as the stone guest of protein aggregation. Nucleic Acids Research. 48: 11880-11889. PMID 33068411 DOI: 10.1093/nar/gkaa822 |
0.489 |
|
| 2020 |
Cerase A, Tartaglia GG. Long non-coding RNA-polycomb intimate rendezvous. Open Biology. 10: 200126. PMID 32898472 DOI: 10.1098/Rsob.200126 |
0.447 |
|
| 2020 |
Gotor NL, Armaos A, Calloni G, Torrent Burgas M, Vabulas RM, De Groot NS, Tartaglia GG. RNA-binding and prion domains: the Yin and Yang of phase separation. Nucleic Acids Research. PMID 32857852 DOI: 10.1093/Nar/Gkaa681 |
0.509 |
|
| 2020 |
Colantoni A, Rupert J, Vandelli A, Tartaglia GG, Zacco E. Zooming in on protein-RNA interactions: a multi-level workflow to identify interaction partners. Biochemical Society Transactions. PMID 32820806 DOI: 10.1042/Bst20191059 |
0.529 |
|
| 2020 |
Conrad T, Ntini E, Lang B, Cozzuto L, Andersen JB, Marquardt JU, Ponomarenko J, Tartaglia GG, Vang Orom UA. Determination of primary microRNA processing in clinical samples by targeted pri-miR-sequencing. Rna (New York, N.Y.). PMID 32669295 DOI: 10.1261/Rna.076240.120 |
0.316 |
|
| 2020 |
Rea J, Menci V, Tollis P, Santini T, Armaos A, Garone MG, Iberite F, Cipriano A, Tartaglia GG, Rosa A, Ballarino M, Laneve P, Caffarelli E. HOTAIRM1 regulates neuronal differentiation by modulating NEUROGENIN 2 and the downstream neurogenic cascade Cell Death and Disease. 11: 527. PMID 32661334 DOI: 10.1038/S41419-020-02738-W |
0.379 |
|
| 2020 |
Alriquet M, Calloni G, Martínez-Limón A, Ponti RD, Hanspach G, Hengesbach M, Tartaglia GG, Vabulas RM. The protective role of m1A during stress-induced granulation. Journal of Molecular Cell Biology. PMID 32462207 DOI: 10.1093/Jmcb/Mjaa023 |
0.385 |
|
| 2020 |
Haify SN, Botta-Orfila T, Hukema RK, Tartaglia GG. In silico, in vitro, and in vivo Approaches to Identify Molecular Players in Fragile X Tremor and Ataxia Syndrome. Frontiers in Molecular Biosciences. 7: 31. PMID 32219099 DOI: 10.3389/Fmolb.2020.00031 |
0.314 |
|
| 2020 |
Panatta E, Lena AM, Mancini M, Smirnov A, Marini A, Delli Ponti R, Botta-Orfila T, Tartaglia GG, Mauriello A, Zhang X, Calin GA, Melino G, Candi E. Long non-coding RNA uc.291 controls epithelial differentiation by interfering with the ACTL6A/BAF complex. Embo Reports. e46734. PMID 32017402 DOI: 10.15252/Embr.201846734 |
0.31 |
|
| 2020 |
Dasti A, Cid-Samper F, Bechara E, Tartaglia GG. RNA-centric approaches to study RNA-protein interactions in vitro and in silico Methods. 178: 11-18. PMID 31563541 DOI: 10.1016/J.Ymeth.2019.09.011 |
0.51 |
|
| 2019 |
Vecchi G, Sormanni P, Mannini B, Vandelli A, Tartaglia GG, Dobson CM, Hartl FU, Vendruscolo M. Proteome-wide observation of the phenomenon of life on the edge of solubility. Proceedings of the National Academy of Sciences of the United States of America. PMID 31892536 DOI: 10.1073/Pnas.1910444117 |
0.457 |
|
| 2019 |
Ciryam P, Antalek M, Cid F, Tartaglia GG, Dobson CM, Guettsches AK, Eggers B, Vorgerd M, Marcus K, Kley RA, Morimoto RI, Vendruscolo M, Weihl CC. A metastable subproteome underlies inclusion formation in muscle proteinopathies. Acta Neuropathologica Communications. 7: 197. PMID 31796104 DOI: 10.1186/S40478-019-0853-9 |
0.438 |
|
| 2019 |
Bolognesi B, Faure AJ, Seuma M, Schmiedel JM, Tartaglia GG, Lehner B. The mutational landscape of a prion-like domain. Nature Communications. 10: 4162. PMID 31519910 DOI: 10.1038/S41467-019-12101-Z |
0.39 |
|
| 2019 |
Delli Ponti R, Armaos A, Vandelli A, Tartaglia GG. CROSSalive: a web server for predicting the in vivo structure of RNA molecules. Bioinformatics (Oxford, England). PMID 31504168 DOI: 10.1093/Bioinformatics/Btz666 |
0.456 |
|
| 2019 |
Groot NSd, Armaos A, Graña-Montes R, Alriquet M, Calloni G, Vabulas RM, Tartaglia GG. RNA structure drives interaction with proteins. Nature Communications. 10: 3246. PMID 31324771 DOI: 10.1038/S41467-019-10923-5 |
0.563 |
|
| 2019 |
Riemschoss K, Arndt V, Bolognesi B, von Eisenhart-Rothe P, Liu S, Buravlova O, Duernberger Y, Paulsen L, Hornberger A, Hossinger A, Lorenzo-Gotor N, Hogl S, Müller SA, Tartaglia G, Lichtenthaler SF, et al. Fibril-induced glutamine-/asparagine-rich prions recruit stress granule proteins in mammalian cells. Life Science Alliance. 2. PMID 31266883 DOI: 10.26508/lsa.201800280 |
0.322 |
|
| 2019 |
Alriquet M, Martínez-Limón A, Hanspach G, Hengesbach M, Tartaglia GG, Calloni G, Vabulas RM. Assembly of Proteins by Free RNA during the Early Phase of Proteostasis Stress. Journal of Proteome Research. PMID 31244213 DOI: 10.1021/Acs.Jproteome.9B00143 |
0.515 |
|
| 2019 |
Cerase A, Armaos A, Neumayer C, Avner P, Guttman M, Tartaglia GG. Phase separation drives X-chromosome inactivation: a hypothesis. Nature Structural & Molecular Biology. 26: 331-334. PMID 31061525 DOI: 10.1038/S41594-019-0223-0 |
0.321 |
|
| 2019 |
Chatterji P, Williams PA, Whelan KA, Samper FC, Andres SF, Simon LA, Parham LR, Mizuno R, Lundsmith ET, Lee DS, Liang S, Wijeratne HS, Marti S, Chau L, Giroux V, ... ... Tartaglia GG, et al. Posttranscriptional regulation of colonic epithelial repair by RNA binding protein IMP1/IGF2BP1. Embo Reports. PMID 31061170 DOI: 10.15252/Embr.201847074 |
0.336 |
|
| 2019 |
Zanzoni A, Spinelli L, Ribeiro DM, Tartaglia GG, Brun C. Post-transcriptional regulatory patterns revealed by protein-RNA interactions. Scientific Reports. 9: 4302. PMID 30867517 DOI: 10.1038/S41598-019-40939-2 |
0.754 |
|
| 2019 |
Guiducci G, Paone A, Tramonti A, Giardina G, Rinaldo S, Bouzidi A, Magnifico MC, Marani M, Menendez JA, Fatica A, Macone A, Armaos A, Tartaglia GG, Contestabile R, Paiardini A, et al. The moonlighting RNA-binding activity of cytosolic serine hydroxymethyltransferase contributes to control compartmentalization of serine metabolism. Nucleic Acids Research. PMID 30809670 DOI: 10.1093/Nar/Gkz129 |
0.417 |
|
| 2019 |
Zacco E, Graña-Montes R, Martin SR, de Groot NS, Alfano C, Tartaglia GG, Pastore A. RNA as a key factor in driving or preventing self-assembly of the TAR DNA-binding protein 43. Journal of Molecular Biology. PMID 30742796 DOI: 10.1016/J.Jmb.2019.01.028 |
0.555 |
|
| 2019 |
Miotto M, Olimpieri PP, Rienzo LD, Ambrosetti F, Corsi P, Lepore R, Tartaglia GG, Milanetti E. Insights on protein thermal stability: a graph representation of molecular interactions Bioinformatics. 35: 2569-2577. PMID 30535291 DOI: 10.1093/Bioinformatics/Bty1011 |
0.405 |
|
| 2019 |
Lang B, Armaos A, Tartaglia GG. RNAct: Protein-RNA interaction predictions for model organisms with supporting experimental data. Nucleic Acids Research. 47: D601-D606. PMID 30445601 DOI: 10.1093/Nar/Gky967 |
0.565 |
|
| 2018 |
Cid-Samper F, Gelabert-Baldrich M, Lang B, Lorenzo-Gotor N, Ponti RD, Severijnen LWFM, Bolognesi B, Gelpi E, Hukema RK, Botta-Orfila T, Tartaglia GG. An Integrative Study of Protein-RNA Condensates Identifies Scaffolding RNAs and Reveals Players in Fragile X-Associated Tremor/Ataxia Syndrome. Cell Reports. 25: 3422-3434.e7. PMID 30566867 DOI: 10.1016/J.Celrep.2018.11.076 |
0.519 |
|
| 2018 |
Ponti RD, Armaos A, Marti S, Tartaglia GG. A Method for RNA Structure Prediction Shows Evidence for Structure in lncRNAs. Frontiers in Molecular Biosciences. 5: 111. PMID 30560136 DOI: 10.3389/Fmolb.2018.00111 |
0.403 |
|
| 2018 |
Vendramin R, Verheyden Y, Ishikawa H, Goedert L, Nicolas E, Saraf K, Armaos A, Delli Ponti R, Izumikawa K, Mestdagh P, Lafontaine DLJ, Tartaglia GG, Takahashi N, Marine JC, Leucci E. SAMMSON fosters cancer cell fitness by concertedly enhancing mitochondrial and cytosolic translation. Nature Structural & Molecular Biology. 25: 1035-1046. PMID 30374086 DOI: 10.1038/S41594-018-0143-4 |
0.485 |
|
| 2018 |
Avolio R, Järvelin AI, Mohammed S, Agliarulo I, Condelli V, Zoppoli P, Calice G, Sarnataro D, Bechara E, Tartaglia GG, Landriscina M, Castello A, Esposito F, Matassa DS. Protein Syndesmos is a novel RNA-binding protein that regulates primary cilia formation. Nucleic Acids Research. PMID 30260431 DOI: 10.1093/Nar/Gky873 |
0.538 |
|
| 2018 |
Qamar S, Wang G, Randle SJ, Ruggeri FS, Varela JA, Lin JQ, Phillips EC, Miyashita A, Williams D, Ströhl F, Meadows W, Ferry R, Dardov VJ, Tartaglia GG, Farrer LA, et al. FUS Phase Separation Is Modulated by a Molecular Chaperone and Methylation of Arginine Cation-π Interactions. Cell. 173: 720-734.e15. PMID 29677515 DOI: 10.1016/J.Cell.2018.03.056 |
0.339 |
|
| 2017 |
Ribeiro DM, Zanzoni A, Cipriano A, Delli Ponti R, Spinelli L, Ballarino M, Bozzoni I, Tartaglia GG, Brun C. Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs. Nucleic Acids Research. PMID 29165713 DOI: 10.1093/Nar/Gkx1169 |
0.752 |
|
| 2017 |
Marchese D, Botta-Orfila T, Cirillo D, Rodriguez JA, Livi CM, Fernández-Santiago R, Ezquerra M, Martí MJ, Bechara E, Tartaglia GG. Discovering the 3' UTR-mediated regulation of alpha-synuclein. Nucleic Acids Research. PMID 29149290 DOI: 10.1093/Nar/Gkx1048 |
0.369 |
|
| 2017 |
Ciryam P, Lambert-Smith IA, Bean DM, Freer R, Cid F, Tartaglia GG, Saunders DN, Wilson MR, Oliver SG, Morimoto RI, Dobson CM, Vendruscolo M, Favrin G, Yerbury JJ. Spinal motor neuron protein supersaturation patterns are associated with inclusion body formation in ALS. Proceedings of the National Academy of Sciences of the United States of America. PMID 28396410 DOI: 10.1073/Pnas.1613854114 |
0.421 |
|
| 2017 |
Ponti RD, Marti S, Armaos A, Tartaglia GG. A high-throughput approach to profile RNA structure. Nucleic Acids Research. 45. PMID 27899588 DOI: 10.1093/Nar/Gkw1094 |
0.4 |
|
| 2016 |
Cirillo D, Blanco M, Armaos A, Buness A, Avner P, Guttman M, Cerase A, Tartaglia GG. Quantitative predictions of protein interactions with long noncoding RNAs. Nature Methods. 14: 5-6. PMID 28032625 DOI: 10.1038/Nmeth.4100 |
0.541 |
|
| 2016 |
Marchese D, de Groot NS, Lorenzo Gotor N, Livi CM, Tartaglia GG. Advances in the characterization of RNA-binding proteins. Wiley Interdisciplinary Reviews. Rna. 7: 793-810. PMID 27503141 DOI: 10.1002/Wrna.1378 |
0.573 |
|
| 2016 |
Tartaglia GG. The Grand Challenge of Characterizing Ribonucleoprotein Networks Frontiers in Molecular Biosciences. 3: 24-24. PMID 27376072 DOI: 10.3389/Fmolb.2016.00024 |
0.521 |
|
| 2016 |
Bolognesi B, Lorenzo Gotor N, Dhar R, Cirillo D, Baldrighi M, Tartaglia GG, Lehner B. A Concentration-Dependent Liquid Phase Separation Can Cause Toxicity upon Increased Protein Expression. Cell Reports. PMID 27320918 DOI: 10.1016/J.Celrep.2016.05.076 |
0.404 |
|
| 2016 |
Botta-Orfila T, Tartaglia GG, Michalon A. Molecular Pathophysiology of Fragile X-Associated Tremor/Ataxia Syndrome and Perspectives for Drug Development. The Cerebellum. 15: 599-610. PMID 27277287 DOI: 10.1007/S12311-016-0800-2 |
0.441 |
|
| 2016 |
Lobanov MY, Klus P, Sokolovsky IV, Tartaglia GG, Galzitskaya OV. Non-random distribution of homo-repeats: links with biological functions and human diseases. Scientific Reports. 6: 26941-26941. PMID 27256590 DOI: 10.1038/Srep26941 |
0.416 |
|
| 2016 |
Livi CM, Klus P, Ponti RD, Tartaglia GG. catRAPID signature: identification of ribonucleoproteins and RNA-binding regions Bioinformatics. 32: 773-775. PMID 26520853 DOI: 10.1093/Bioinformatics/Btv629 |
0.503 |
|
| 2016 |
Marchese D, Livi CM, Tartaglia GG. A Computational Approach for the Discovery of Protein–RNA Networks Methods of Molecular Biology. 1358: 29-39. PMID 26463375 DOI: 10.1007/978-1-4939-3067-8_2 |
0.497 |
|
| 2015 |
Klus P, Ponti RD, Livi CM, Tartaglia GG. Protein aggregation, structural disorder and RNA-binding ability: a new approach for physico-chemical and gene ontology classification of multiple datasets Bmc Genomics. 16: 1071-1071. PMID 26673865 DOI: 10.1186/S12864-015-2280-Z |
0.515 |
|
| 2015 |
Murakami T, Qamar S, Lin JQ, Schierle GS, Rees E, Miyashita A, Costa AR, Dodd RB, Chan FT, Michel CH, Kronenberg-Versteeg D, Li Y, Yang SP, Wakutani Y, Meadows W, ... ... Tartaglia GG, et al. ALS/FTD Mutation-Induced Phase Transition of FUS Liquid Droplets and Reversible Hydrogels into Irreversible Hydrogels Impairs RNP Granule Function. Neuron. PMID 26526393 DOI: 10.1016/J.Neuron.2015.10.030 |
0.387 |
|
| 2015 |
Cirillo D, Botta-Orfila T, Tartaglia GG. By the company they keep: interaction networks define the binding ability of transcription factors. Nucleic Acids Research. PMID 26089389 DOI: 10.1093/Nar/Gkv607 |
0.424 |
|
| 2015 |
Porcari R, Proukakis C, Waudby CA, Bolognesi B, Mangione PP, Paton JF, Mullin S, Cabrita LD, Penco A, Relini A, Verona G, Vendruscolo M, Stoppini M, Tartaglia GG, Camilloni C, et al. The H50Q mutation induces a 10-fold decrease in the solubility of α-synuclein. The Journal of Biological Chemistry. 290: 2395-404. PMID 25505181 DOI: 10.1074/Jbc.M114.610527 |
0.31 |
|
| 2014 |
Agostini F, Cirillo D, Ponti RD, Tartaglia GG. SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences. Bmc Genomics. 15: 925. PMID 25341390 DOI: 10.1186/1471-2164-15-925 |
0.327 |
|
| 2014 |
Agostini F, Cirillo D, Livi CM, Delli Ponti R, Tartaglia GG. ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli. Bioinformatics (Oxford, England). 30: 2975-7. PMID 24990610 DOI: 10.1093/Bioinformatics/Btu420 |
0.383 |
|
| 2014 |
Cirillo D, Livi CM, Agostini F, Tartaglia GG. Discovery of protein-RNA networks. Molecular Biosystems. 10: 1632-42. PMID 24756571 DOI: 10.1039/C4Mb00099D |
0.573 |
|
| 2014 |
Fu B, Sahakyan AB, Camilloni C, Tartaglia GG, Paci E, Caflisch A, Vendruscolo M, Cavalli A. ALMOST: an all atom molecular simulation toolkit for protein structure determination. Journal of Computational Chemistry. 35: 1101-5. PMID 24676684 DOI: 10.1002/Jcc.23588 |
0.338 |
|
| 2014 |
Klus P, Bolognesi B, Agostini F, Marchese D, Zanzoni A, Tartaglia GG. The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities. Bioinformatics (Oxford, England). 30: 1601-8. PMID 24493033 DOI: 10.1093/Bioinformatics/Btu074 |
0.741 |
|
| 2014 |
Cirillo D, Marchese D, Agostini F, Livi CM, Botta-Orfila T, Tartaglia GG. Constitutive patterns of gene expression regulated by RNA-binding proteins. Genome Biology. 15: R13. PMID 24401680 DOI: 10.1186/Gb-2014-15-1-R13 |
0.546 |
|
| 2014 |
Ciryam P, Tartaglia GG, Morimoto RI, Dobson CM, O'Brien EP, Vendruscolo M. Proteome Metastability in Health, Aging, and Disease Biophysical Journal. 106: 59a. DOI: 10.1016/J.Bpj.2013.11.405 |
0.469 |
|
| 2013 |
Ciryam P, Tartaglia GG, Morimoto RI, Dobson CM, Vendruscolo M. Widespread aggregation and neurodegenerative diseases are associated with supersaturated proteins. Cell Reports. 5: 781-90. PMID 24183671 DOI: 10.1016/J.Celrep.2013.09.043 |
0.473 |
|
| 2013 |
Zanzoni A, Marchese D, Agostini F, Bolognesi B, Cirillo D, Botta-Orfila M, Livi CM, Rodriguez-Mulero S, Tartaglia GG. Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein. Nucleic Acids Research. 41: 9987-98. PMID 24003031 DOI: 10.1093/Nar/Gkt794 |
0.773 |
|
| 2013 |
Agostini F, Zanzoni A, Klus P, Marchese D, Cirillo D, Tartaglia GG. catRAPID omics: a web server for large-scale prediction of protein-RNA interactions. Bioinformatics (Oxford, England). 29: 2928-30. PMID 23975767 DOI: 10.1093/Bioinformatics/Btt495 |
0.761 |
|
| 2013 |
Bolognesi B, Tartaglia GG. Physicochemical principles of protein aggregation. Progress in Molecular Biology and Translational Science. 117: 53-72. PMID 23663965 DOI: 10.1016/B978-0-12-386931-9.00003-9 |
0.445 |
|
| 2013 |
Cirillo D, Agostini F, Klus P, Marchese D, Rodriguez S, Bolognesi B, Tartaglia GG. Neurodegenerative diseases: quantitative predictions of protein-RNA interactions. Rna (New York, N.Y.). 19: 129-40. PMID 23264567 DOI: 10.1261/Rna.034777.112 |
0.575 |
|
| 2013 |
Agostini F, Cirillo D, Bolognesi B, Tartaglia GG. X-inactivation: quantitative predictions of protein interactions in the Xist network. Nucleic Acids Research. 41: e31. PMID 23093590 DOI: 10.1093/Nar/Gks968 |
0.442 |
|
| 2012 |
Johnson R, Noble W, Tartaglia GG, Buckley NJ. Neurodegeneration as an RNA disorder. Progress in Neurobiology. 99: 293-315. PMID 23063563 DOI: 10.1016/J.Pneurobio.2012.09.006 |
0.409 |
|
| 2012 |
Roodveldt C, Andersson A, De Genst EJ, Labrador-Garrido A, Buell AK, Dobson CM, Tartaglia GG, Vendruscolo M. A rationally designed six-residue swap generates comparability in the aggregation behavior of α-synuclein and β-synuclein. Biochemistry. 51: 8771-8. PMID 23003198 DOI: 10.1021/Bi300558Q |
0.316 |
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| 2012 |
Calloni G, Chen T, Schermann SM, Chang HC, Genevaux P, Agostini F, Tartaglia GG, Hayer-Hartl M, Hartl FU. DnaK functions as a central hub in the E. coli chaperone network. Cell Reports. 1: 251-64. PMID 22832197 DOI: 10.1016/J.Celrep.2011.12.007 |
0.487 |
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| 2012 |
Iglesias-Platas I, Martin-Trujillo A, Cirillo D, Court F, Guillaumet-Adkins A, Camprubi C, Bourc'his D, Hata K, Feil R, Tartaglia G, Arnaud P, Monk D. Characterization of novel paternal ncRNAs at the Plagl1 locus, including Hymai, predicted to interact with regulators of active chromatin. Plos One. 7: e38907. PMID 22723905 DOI: 10.1371/Journal.Pone.0038907 |
0.407 |
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| 2012 |
Agostini F, Vendruscolo M, Tartaglia GG. Sequence-based prediction of protein solubility. Journal of Molecular Biology. 421: 237-41. PMID 22172487 DOI: 10.1016/J.Jmb.2011.12.005 |
0.493 |
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| 2012 |
Cirillo D, Agostini F, Tartaglia GG. Predictions of protein-RNA interactions Wiley Interdisciplinary Reviews: Computational Molecular Science. 3: 161-175. DOI: 10.1002/Wcms.1119 |
0.49 |
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| 2011 |
Mossuto MF, Bolognesi B, Guixer B, Dhulesia A, Agostini F, Kumita JR, Tartaglia GG, Dumoulin M, Dobson CM, Salvatella X. Disulfide bonds reduce the toxicity of the amyloid fibrils formed by an extracellular protein. Angewandte Chemie (International Ed. in English). 50: 7048-51. PMID 21671315 DOI: 10.1002/Anie.201100986 |
0.384 |
|
| 2011 |
Baldwin AJ, Knowles TP, Tartaglia GG, Fitzpatrick AW, Devlin GL, Shammas SL, Waudby CA, Mossuto MF, Meehan S, Gras SL, Christodoulou J, Anthony-Cahill SJ, Barker PD, Vendruscolo M, Dobson CM. Metastability of native proteins and the phenomenon of amyloid formation. Journal of the American Chemical Society. 133: 14160-3. PMID 21650202 DOI: 10.1021/Ja2017703 |
0.438 |
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| 2011 |
Bellucci M, Agostini F, Masin M, Tartaglia GG. Predicting protein associations with long noncoding RNAs Nature Methods. 8: 444-445. PMID 21623348 DOI: 10.1038/Nmeth.1611 |
0.559 |
|
| 2011 |
Raimondi S, Guglielmi F, Giorgetti S, Di Gaetano S, Arciello A, Monti DM, Relini A, Nichino D, Doglia SM, Natalello A, Pucci P, Mangione P, Obici L, Merlini G, Stoppini M, ... ... Tartaglia GG, et al. Effects of the known pathogenic mutations on the aggregation pathway of the amyloidogenic peptide of apolipoprotein A-I. Journal of Molecular Biology. 407: 465-76. PMID 21296086 DOI: 10.1016/J.Jmb.2011.01.044 |
0.343 |
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| 2011 |
Olzscha H, Schermann SM, Woerner AC, Pinkert S, Hecht MH, Tartaglia GG, Vendruscolo M, Hayer-Hartl M, Hartl FU, Vabulas RM. Amyloid-like aggregates sequester numerous metastable proteins with essential cellular functions. Cell. 144: 67-78. PMID 21215370 DOI: 10.1016/J.Cell.2010.11.050 |
0.522 |
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| 2011 |
Bellucci M, Agostini F, Masin M, Tartaglia GG. Predicting protein associations with long noncoding RNAs F1000research. 2. DOI: 10.7490/F1000Research.2007.1 |
0.51 |
|
| 2010 |
Szczepankiewicz O, Cabaleiro-Lago C, Tartaglia GG, Vendruscolo M, Hunter T, Hunter GJ, Nilsson H, Thulin E, Linse S. Interactions in the native state of monellin, which play a protective role against aggregation. Molecular Biosystems. 7: 521-32. PMID 21076757 DOI: 10.1039/C0Mb00155D |
0.431 |
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| 2010 |
Lee Y, Zhou T, Tartaglia GG, Vendruscolo M, Wilke CO. Translationally optimal codons associate with aggregation-prone sites in proteins. Proteomics. 10: 4163-71. PMID 21046618 DOI: 10.1002/Pmic.201000229 |
0.351 |
|
| 2010 |
Tartaglia GG, Vendruscolo M. Proteome-level interplay between folding and aggregation propensities of proteins. Journal of Molecular Biology. 402: 919-28. PMID 20709078 DOI: 10.1016/J.Jmb.2010.08.013 |
0.485 |
|
| 2010 |
Tartaglia GG, Dobson CM, Hartl FU, Vendruscolo M. Physicochemical determinants of chaperone requirements. Journal of Molecular Biology. 400: 579-88. PMID 20416322 DOI: 10.1016/J.Jmb.2010.03.066 |
0.428 |
|
| 2010 |
Brorsson AC, Bolognesi B, Tartaglia GG, Shammas SL, Favrin G, Watson I, Lomas DA, Chiti F, Vendruscolo M, Dobson CM, Crowther DC, Luheshi LM. Intrinsic determinants of neurotoxic aggregate formation by the amyloid beta peptide. Biophysical Journal. 98: 1677-84. PMID 20409489 DOI: 10.1016/J.Bpj.2009.12.4320 |
0.325 |
|
| 2009 |
Tartaglia GG, Vendruscolo M. Correlation between mRNA expression levels and protein aggregation propensities in subcellular localisations. Molecular Biosystems. 5: 1873-6. PMID 19763336 DOI: 10.1039/B913099N |
0.454 |
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| 2009 |
Pechmann S, Levy ED, Tartaglia GG, Vendruscolo M. Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins. Proceedings of the National Academy of Sciences of the United States of America. 106: 10159-64. PMID 19502422 DOI: 10.1073/Pnas.0812414106 |
0.495 |
|
| 2009 |
Yanamandra K, Alexeyev O, Zamotin V, Srivastava V, Shchukarev A, Brorsson AC, Tartaglia GG, Vogl T, Kayed R, Wingsle G, Olsson J, Dobson CM, Bergh A, Elgh F, Morozova-Roche LA. Amyloid formation by the pro-inflammatory S100A8/A9 proteins in the ageing prostate. Plos One. 4: e5562. PMID 19440546 DOI: 10.1371/Journal.Pone.0005562 |
0.306 |
|
| 2009 |
Buell AK, Tartaglia GG, Birkett NR, Waudby CA, Vendruscolo M, Salvatella X, Welland ME, Dobson CM, Knowles TP. Position-dependent electrostatic protection against protein aggregation. Chembiochem : a European Journal of Chemical Biology. 10: 1309-12. PMID 19415709 DOI: 10.1002/Cbic.200900144 |
0.395 |
|
| 2009 |
Routledge KE, Tartaglia GG, Platt GW, Vendruscolo M, Radford SE. Competition between intramolecular and intermolecular interactions in an amyloid-forming protein. Journal of Molecular Biology. 389: 776-86. PMID 19393661 DOI: 10.1016/J.Jmb.2009.04.042 |
0.431 |
|
| 2009 |
Tartaglia GG, Pechmann S, Dobson CM, Vendruscolo M. A relationship between mRNA expression levels and protein solubility in E. coli. Journal of Molecular Biology. 388: 381-9. PMID 19281824 DOI: 10.1016/J.Jmb.2009.03.002 |
0.429 |
|
| 2009 |
Hamada D, Tanaka T, Tartaglia GG, Pawar A, Vendruscolo M, Kawamura M, Tamura A, Tanaka N, Dobson CM. Competition between folding, native-state dimerisation and amyloid aggregation in beta-lactoglobulin. Journal of Molecular Biology. 386: 878-90. PMID 19133274 DOI: 10.1016/J.Jmb.2008.12.038 |
0.32 |
|
| 2008 |
Vendruscolo M, Tartaglia GG. Towards quantitative predictions in cell biology using chemical properties of proteins. Molecular Biosystems. 4: 1170-5. PMID 19396379 DOI: 10.1039/B805710A |
0.421 |
|
| 2008 |
Calamai M, Tartaglia GG, Vendruscolo M, Chiti F, Dobson CM. Mutational analysis of the aggregation-prone and disaggregation-prone regions of acylphosphatase. Journal of Molecular Biology. 387: 965-74. PMID 18809411 DOI: 10.1016/J.Jmb.2008.09.003 |
0.331 |
|
| 2008 |
Tartaglia GG, Vendruscolo M. The Zyggregator method for predicting protein aggregation propensities. Chemical Society Reviews. 37: 1395-401. PMID 18568165 DOI: 10.1039/B706784B |
0.46 |
|
| 2008 |
Tartaglia GG, Pawar AP, Campioni S, Dobson CM, Chiti F, Vendruscolo M. Prediction of aggregation-prone regions in structured proteins. Journal of Molecular Biology. 380: 425-36. PMID 18514226 DOI: 10.1016/J.Jmb.2008.05.013 |
0.456 |
|
| 2008 |
Rivers RC, Kumita JR, Tartaglia GG, Dedmon MM, Pawar A, Vendruscolo M, Dobson CM, Christodoulou J. Molecular determinants of the aggregation behavior of alpha- and beta-synuclein. Protein Science : a Publication of the Protein Society. 17: 887-98. PMID 18436957 DOI: 10.1110/Ps.073181508 |
0.352 |
|
| 2008 |
Pechmann S, Levy ED, Tartaglia GG, Vendruscolo M. Competition between protein aggregation and protein complex formation Bmc Bioinformatics. 9. DOI: 10.1186/1471-2105-9-S10-O2 |
0.48 |
|
| 2008 |
Tartaglia GG, Vendruscolo M. ChemInform Abstract: The Zyggregator Method for Predicting Protein Aggregation Propensities Cheminform. 39. DOI: 10.1002/CHIN.200839274 |
0.325 |
|
| 2007 |
Luheshi LM, Tartaglia GG, Brorsson AC, Pawar AP, Watson IE, Chiti F, Vendruscolo M, Lomas DA, Dobson CM, Crowther DC. Systematic in vivo analysis of the intrinsic determinants of amyloid Beta pathogenicity. Plos Biology. 5: e290. PMID 17973577 DOI: 10.1371/Journal.Pbio.0050290 |
0.404 |
|
| 2007 |
Meehan S, Knowles TP, Baldwin AJ, Smith JF, Squires AM, Clements P, Treweek TM, Ecroyd H, Tartaglia GG, Vendruscolo M, Macphee CE, Dobson CM, Carver JA. Characterisation of amyloid fibril formation by small heat-shock chaperone proteins human alphaA-, alphaB- and R120G alphaB-crystallins. Journal of Molecular Biology. 372: 470-84. PMID 17662998 DOI: 10.1016/J.Jmb.2007.06.060 |
0.428 |
|
| 2007 |
Meinhardt J, Tartaglia GG, Pawar A, Christopeit T, Hortschansky P, Schroeckh V, Dobson CM, Vendruscolo M, Fändrich M. Similarities in the thermodynamics and kinetics of aggregation of disease-related Abeta(1-40) peptides. Protein Science : a Publication of the Protein Society. 16: 1214-22. PMID 17525469 DOI: 10.1110/Ps.062734207 |
0.311 |
|
| 2007 |
Tartaglia GG, Pechmann S, Dobson CM, Vendruscolo M. Life on the edge: a link between gene expression levels and aggregation rates of human proteins. Trends in Biochemical Sciences. 32: 204-6. PMID 17419062 DOI: 10.1016/J.Tibs.2007.03.005 |
0.415 |
|
| 2007 |
Tartaglia GG, Caflisch A. Computational analysis of the S. cerevisiae proteome reveals the function and cellular localization of the least and most amyloidogenic proteins. Proteins. 68: 273-8. PMID 17407164 DOI: 10.1002/Prot.21427 |
0.463 |
|
| 2007 |
Tartaglia GG, Cavalli A, Vendruscolo M. Prediction of local structural stabilities of proteins from their amino acid sequences. Structure (London, England : 1993). 15: 139-43. PMID 17292832 DOI: 10.1016/J.Str.2006.12.007 |
0.417 |
|
| 2005 |
Tartaglia GG, Cavalli A, Pellarin R, Caflisch A. Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences. Protein Science : a Publication of the Protein Society. 14: 2723-34. PMID 16195556 DOI: 10.1110/Ps.051471205 |
0.409 |
|
| 2005 |
Tartaglia GG, Pellarin R, Cavalli A, Caflisch A. Organism complexity anti-correlates with proteomic beta-aggregation propensity. Protein Science : a Publication of the Protein Society. 14: 2735-40. PMID 16155201 DOI: 10.1110/Ps.051473805 |
0.354 |
|
| 2004 |
Tartaglia GG, Cavalli A, Pellarin R, Caflisch A. The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates. Protein Science : a Publication of the Protein Society. 13: 1939-41. PMID 15169952 DOI: 10.1110/Ps.04663504 |
0.376 |
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