Kim Sneppen - Publications

Affiliations: 
Physics Niels Bohr Institute 

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Newman ME, Sneppen K. Avalanches, scaling, and coherent noise. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 54: 6226-6231. PMID 9965842 DOI: 10.1103/Physreve.54.6226  0.305
2019 Jensen GG, Uekermann F, Sneppen K. Multi stability and global bifurcations in epidemic model with distributed delay SIRnS-model European Physical Journal B. 92: 1-6. DOI: 10.1140/Epjb/E2018-90562-1  0.303
2018 Dahl-Jensen SB, Yennek S, Flasse L, Larsen HL, Sever D, Karremore G, Novak I, Sneppen K, Grapin-Botton A. Deconstructing the principles of ductal network formation in the pancreas. Plos Biology. 16: e2002842. PMID 30048442 DOI: 10.1371/Journal.Pbio.2002842  0.304
2017 Nissen SB, Perera M, Gonzalez JM, Morgani SM, Jensen MH, Sneppen K, Brickman JM, Trusina A. Four simple rules that are sufficient to generate the mammalian blastocyst. Plos Biology. 15: e2000737. PMID 28700688 DOI: 10.1371/Journal.Pbio.2000737  0.33
2017 Sneppen K. Models of life: epigenetics, diversity and cycles. Reports On Progress in Physics. Physical Society (Great Britain). 80: 042601. PMID 28106010 DOI: 10.1088/1361-6633/Aa5Aeb  0.312
2016 Mitarai N, Gunnarson I, Pedersen BN, Rosiek CA, Sneppen K. Three is much more than two in coarsening dynamics of cyclic competitions. Physical Review. E. 93: 042408. PMID 27176330 DOI: 10.1103/Physreve.93.042408  0.302
2016 Dahl-Jensen SB, Figueiredo-Larsen M, Grapin-Botton A, Sneppen K. Short-range growth inhibitory signals from the epithelium can drive non-stereotypic branching in the pancreas. Physical Biology. 13: 016007. PMID 26906913 DOI: 10.1088/1478-3975/13/1/016007  0.318
2012 Mitarai N, Mathiesen J, Sneppen K. Emergence of diversity in a model ecosystem. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 011929. PMID 23005473 DOI: 10.1103/Physreve.86.011929  0.311
2012 Cataudella I, Trusina A, Sneppen K, Gerdes K, Mitarai N. Conditional cooperativity in toxin-antitoxin regulation prevents random toxin activation and promotes fast translational recovery. Nucleic Acids Research. 40: 6424-34. PMID 22495927 DOI: 10.1093/Nar/Gks297  0.304
2011 Mathiesen J, Mitarai N, Sneppen K, Trusina A. Ecosystems with mutually exclusive interactions self-organize to a state of high diversity. Physical Review Letters. 107: 188101. PMID 22107676 DOI: 10.1103/Physrevlett.107.188101  0.303
2011 Bendtsen KM, Erdossy J, Csiszovszki Z, Svenningsen SL, Sneppen K, Krishna S, Semsey S. Direct and indirect effects in the regulation of overlapping promoters. Nucleic Acids Research. 39: 6879-85. PMID 21609952 DOI: 10.1093/Nar/Gkr390  0.31
2010 Sneppen K, Krishna S, Semsey S. Simplified models of biological networks. Annual Review of Biophysics. 39: 43-59. PMID 20192769 DOI: 10.1146/Annurev.Biophys.093008.131241  0.331
2009 Avlund M, Dodd IB, Sneppen K, Krishna S. Minimal gene regulatory circuits that can count like bacteriophage lambda. Journal of Molecular Biology. 394: 681-93. PMID 19796646 DOI: 10.1016/J.Jmb.2009.09.053  0.329
2009 Maslov S, Krishna S, Pang TY, Sneppen K. Toolbox model of evolution of prokaryotic metabolic networks and their regulation. Proceedings of the National Academy of Sciences of the United States of America. 106: 9743-8. PMID 19482938 DOI: 10.1073/Pnas.0903206106  0.313
2009 Semsey S, Krishna S, Erdossy J, Horváth P, Orosz L, Sneppen K, Adhya S. Dominant negative autoregulation limits steady-state repression levels in gene networks. Journal of Bacteriology. 191: 4487-91. PMID 19429616 DOI: 10.1128/Jb.00056-09  0.305
2008 Axelsen JB, Krishna S, Sneppen K. The cost and capacity of signaling in theEscherichia coliprotein reaction network Journal of Statistical Mechanics: Theory and Experiment. 2008: P01018. DOI: 10.1088/1742-5468/2008/01/P01018  0.303
2007 Maslov S, Sneppen K, Ispolatov I. Spreading out of perturbations in reversible reaction networks. New Journal of Physics. 9: 273. PMID 18046464 DOI: 10.1088/1367-2630/9/8/273  0.324
2007 Tiana G, Krishna S, Pigolotti S, Jensen MH, Sneppen K. Oscillations and temporal signalling in cells. Physical Biology. 4: R1-17. PMID 17664651 DOI: 10.1088/1478-3975/4/2/R01  0.302
2007 Semsey S, Krishna S, Sneppen K, Adhya S. Signal integration in the galactose network of Escherichia coli. Molecular Microbiology. 65: 465-76. PMID 17630975 DOI: 10.1111/J.1365-2958.2007.05798.X  0.321
2007 Stibius KB, Sneppen K. Modeling the two-hybrid detector: experimental bias on protein interaction networks. Biophysical Journal. 93: 2562-6. PMID 17557786 DOI: 10.1529/Biophysj.106.098236  0.32
2007 Dodd IB, Shearwin KE, Sneppen K. Modelling Transcriptional Interference and DNA Looping in Gene Regulation Journal of Molecular Biology. 369: 1200-1213. PMID 17498740 DOI: 10.1016/J.Jmb.2007.04.041  0.309
2007 Krishna S, Maslov S, Sneppen K. UV-induced mutagenesis in Escherichia coli SOS response: a quantitative model. Plos Computational Biology. 3: e41. PMID 17367202 DOI: 10.1371/Journal.Pcbi.0030041  0.325
2007 Enemark J, Sneppen K. Gene duplication models for directed networks with limits on growth Journal of Statistical Mechanics: Theory and Experiment. 2007: P11007-P11007. DOI: 10.1088/1742-5468/2007/11/P11007  0.338
2006 Rosvall M, Dodd IB, Krishna S, Sneppen K. Network models of phage-bacteria coevolution. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 066105. PMID 17280119 DOI: 10.1103/Physreve.74.066105  0.331
2006 Axelsen JB, Bernhardsson S, Rosvall M, Sneppen K, Trusina A. Degree landscapes in scale-free networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 036119. PMID 17025720 DOI: 10.1103/Physreve.74.036119  0.306
2006 Krishna S, Andersson AM, Semsey S, Sneppen K. Structure and function of negative feedback loops at the interface of genetic and metabolic networks. Nucleic Acids Research. 34: 2455-62. PMID 16684993 DOI: 10.1093/Nar/Gkl140  0.331
2006 Rosvall M, Sneppen K. Self-assembly of information in networks Europhysics Letters. 74: 1109-1115. DOI: 10.1209/Epl/I2006-10064-2  0.308
2005 Trusina A, Sneppen K, Dodd IB, Shearwin KE, Egan JB. Functional alignment of regulatory networks: a study of temperate phages. Plos Computational Biology. 1: e74. PMID 16477325 DOI: 10.1371/Journal.Pcbi.0010074  0.306
2005 Maslov S, Sneppen K. Computational architecture of the yeast regulatory network. Physical Biology. 2: S94-100. PMID 16280626 DOI: 10.1088/1478-3975/2/4/S03  0.326
2005 Sneppen K, Dodd IB, Shearwin KE, Palmer AC, Schubert RA, Callen BP, Egan JB. A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coli Journal of Molecular Biology. 346: 399-409. PMID 15670592 DOI: 10.1016/J.Jmb.2004.11.075  0.303
2005 Kim BJ, Trusina A, Minnhagen P, Sneppen K. Self organized scale-free networks from merging and regeneration European Physical Journal B. 43: 369-372. DOI: 10.1140/Epjb/E2005-00065-Y  0.307
2005 Grönlund A, Sneppen K, Minnhagen P. Correlations in Networks Associated to Preferential Growth Physica Scripta. 71: 680-682. DOI: 10.1088/0031-8949/71/6/018  0.31
2004 Maslov S, Sneppen K. Detection of topological patterns in protein networks. Genetic Engineering. 26: 33-47. PMID 15387292 DOI: 10.1007/978-0-306-48573-2_4  0.332
2004 Trusina A, Maslov S, Minnhagen P, Sneppen K. Hierarchy measures in complex networks. Physical Review Letters. 92: 178702. PMID 15169201 DOI: 10.1103/Physrevlett.92.178702  0.322
2004 Maslov S, Sneppen K, Eriksen KA, Yan KK. Upstream plasticity and downstream robustness in evolution of molecular networks. Bmc Evolutionary Biology. 4: 9. PMID 15070432 DOI: 10.1186/1471-2148-4-9  0.327
2004 Sneppen K, Rosvall M, Trusina A, Minnhagen P. A simple model for self-organization of bipartite networks Europhysics Letters. 67: 349-354. DOI: 10.1209/Epl/I2004-10074-0  0.304
2004 Minnhagen P, Rosvall M, Sneppen K, Trusina A. Self-organization of structures and networks from merging and small-scale fluctuations Physica a: Statistical Mechanics and Its Applications. 340: 725-732. DOI: 10.1016/J.Physa.2004.05.019  0.312
2004 Simonsen I, Eriksen KA, Maslov S, Sneppen K. Diffusion on complex networks: A way to probe their large-scale topological structures Physica a: Statistical Mechanics and Its Applications. 336: 163-173. DOI: 10.1016/J.Physa.2004.01.021  0.306
2004 Maslov S, Sneppen K, Zaliznyak A. Detection of topological patterns in complex networks: correlation profile of the internet Physica a-Statistical Mechanics and Its Applications. 333: 529-540. DOI: 10.1016/J.Physa.2003.06.002  0.318
2003 Rosvall M, Sneppen K. Modeling dynamics of information networks. Physical Review Letters. 91: 178701. PMID 14611380 DOI: 10.1103/Physrevlett.91.178701  0.326
2002 Maslov S, Sneppen K. Protein interaction networks beyond artifacts. Febs Letters. 530: 255-6. PMID 12387903 DOI: 10.1016/S0014-5793(02)03428-2  0.314
2002 Aurell E, Brown S, Johanson J, Sneppen K. Stability puzzles in phage lambda. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 051914. PMID 12059600 DOI: 10.1103/Physreve.65.051914  0.301
2002 Maslov S, Sneppen K. Specificity and stability in topology of protein networks. Science (New York, N.Y.). 296: 910-3. PMID 11988575 DOI: 10.1126/Science.1065103  0.326
2001 Bornholdt S, Sneppen K. Robustness as an evolutionary principle. Proceedings. Biological Sciences. 267: 2281-6. PMID 11413644 DOI: 10.1098/Rspb.2000.1280  0.338
1999 Hansen A, Jensen MH, Sneppen K, Zocchi G. A model for the thermodynamics of globular proteins Physica a: Statistical Mechanics and Its Applications. 270: 278-287. DOI: 10.1016/S0378-4371(99)00131-4  0.3
1998 Christensen K, Donangelo R, Koiller B, Sneppen K. Evolution of Random Networks Physical Review Letters. 81: 2380-2383. DOI: 10.1103/Physrevlett.81.2380  0.32
1995 Sneppen K, Bak P, Flyvbjerg H, Jensen MH. Evolution as a self-organized critical phenomenon Proceedings of the National Academy of Sciences of the United States of America. 92: 5209-5213. PMID 7761475 DOI: 10.1073/Pnas.92.11.5209  0.304
1995 HUBER G, JENSEN MH, SNEPPEN K. A DIMENSION FORMULA FOR SELF-SIMILAR AND SELF-AFFINE FRACTALS Fractals. 3: 525-531. DOI: 10.1142/S0218348X9500045X  0.475
1995 Huber G, Jensen MH, Sneppen K. Distributions of self-interactions and voids in (1+1)-dimensional directed percolation Physical Review E. 52. DOI: 10.1103/Physreve.52.R2133  0.485
1994 Falk J, Jensen MH, Sneppen K. Intermittent dynamics and self-organized depinning in propagating fronts Physical Review E. 49: 2804-2808. DOI: 10.1103/Physreve.49.2804  0.301
1993 Flyvbjerg H, Sneppen K, Bak P. Mean field theory for a simple model of evolution. Physical Review Letters. 71: 4087-4090. PMID 10055150 DOI: 10.1103/Physrevlett.71.4087  0.3
1993 Bak P, Sneppen K. Punctuated equilibrium and criticality in a simple model of evolution. Physical Review Letters. 71: 4083-4086. PMID 10055149 DOI: 10.1103/Physrevlett.71.4083  0.321
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