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Salvador Dura-Bernal, PhD - Publications

Affiliations: 
Physiology & Pharmacology SUNY Downstate, Brooklyn, NY, United States 
Area:
Computational Neuroscience
Website:
https://downstate.academia.edu/SalvadorDuraBernal
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46/52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Dura-Bernal S, Griffith EY, Barczak A, O'Connell MN, McGinnis T, Moreira JVS, Schroeder CE, Lytton WW, Lakatos P, Neymotin SA. Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics. Cell Reports. 42: 113378. PMID 37925640 DOI: 10.1016/j.celrep.2023.113378  0.758
2023 Dura-Bernal S, Neymotin SA, Suter BA, Dacre J, Moreira JVS, Urdapilleta E, Schiemann J, Duguid I, Shepherd GMG, Lytton WW. Multiscale model of primary motor cortex circuits predicts in vivo cell-type-specific, behavioral state-dependent dynamics. Cell Reports. 42: 112574. PMID 37300831 DOI: 10.1016/j.celrep.2023.112574  0.792
2022 Borges FS, Moreira JVS, Takarabe LM, Lytton WW, Dura-Bernal S. Large-scale biophysically detailed model of somatosensory thalamocortical circuits in NetPyNE. Frontiers in Neuroinformatics. 16: 884245. PMID 36213546 DOI: 10.3389/fninf.2022.884245  0.658
2022 Neymotin SA, Tal I, Barczak A, O'Connell MN, McGinnis T, Markowitz N, Espinal E, Griffith E, Anwar H, Dura-Bernal S, Schroeder CE, Lytton WW, Jones SR, Bickel S, Lakatos P. Detecting spontaneous neural oscillation events in primate auditory cortex. Eneuro. PMID 35906065 DOI: 10.1523/ENEURO.0281-21.2022  0.751
2022 Awile O, Kumbhar P, Cornu N, Dura-Bernal S, King JG, Lupton O, Magkanaris I, McDougal RA, Newton AJH, Pereira F, Săvulescu A, Carnevale NT, Lytton WW, Hines ML, Schürmann F. Modernizing the NEURON Simulator for Sustainability, Portability, and Performance. Frontiers in Neuroinformatics. 16: 884046. PMID 35832575 DOI: 10.3389/fninf.2022.884046  0.59
2022 Anwar H, Caby S, Dura-Bernal S, D'Onofrio D, Hasegan D, Deible M, Grunblatt S, Chadderdon GL, Kerr CC, Lakatos P, Lytton WW, Hazan H, Neymotin SA. Training a spiking neuronal network model of visual-motor cortex to play a virtual racket-ball game using reinforcement learning. Plos One. 17: e0265808. PMID 35544518 DOI: 10.1371/journal.pone.0265808  0.744
2022 Medlock L, Sekiguchi K, Hong S, Dura-Bernal S, Lytton WW, Prescott SA. Multiscale Computer Model of the Spinal Dorsal Horn Reveals Changes in Network Processing Associated with Chronic Pain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 42: 3133-3149. PMID 35232767 DOI: 10.1523/JNEUROSCI.1199-21.2022  0.591
2021 Romaro C, Najman FA, Lytton WW, Roque AC, Dura-Bernal S. NetPyNE Implementation and Scaling of the Potjans-Diesmann Cortical Microcircuit Model. Neural Computation. 33: 1993-2032. PMID 34411272 DOI: 10.1162/neco_a_01400  0.619
2021 Peng GCY, Alber M, Tepole AB, Cannon WR, De S, Dura-Bernal S, Garikipati K, Karniadakis G, Lytton WW, Perdikaris P, Petzold L, Kuhl E. Multiscale modeling meets machine learning: What can we learn? Archives of Computational Methods in Engineering : State of the Art Reviews. 28: 1017-1037. PMID 34093005 DOI: 10.1007/s11831-020-09405-5  0.542
2021 Kelley C, Dura-Bernal S, Neymotin SA, Antic SD, Carnevale NT, Migliore M, Lytton WW. Effects of I and TASK-like shunting current on dendritic impedance in layer 5 pyramidal-tract neurons. Journal of Neurophysiology. PMID 33689489 DOI: 10.1152/jn.00015.2021  0.77
2020 Sivagnanam S, Gorman W, Doherty D, Neymotin SA, Fang S, Hovhannisyan H, Lytton WW, Dura-Bernal S. Simulating Large-scale Models of Brain Neuronal Circuits using Google Cloud Platform. Pearc20 : Practice and Experience in Advanced Research Computing 2020 : Catch the Wave : July 27-31, 2020, Portland, or Virtual Conference. Practice and Experience in Advanced Research Computing (Conference) (2020 : Online). 2020: 505-509. PMID 35098264 DOI: 10.1145/3311790.3399621  0.755
2020 Gao PP, Graham JW, Zhou WL, Jang J, Angulo SL, Dura-Bernal S, Hines ML, Lytton W, Antic SD. Local Glutamate-Mediated Dendritic Plateau Potentials Change the State of the Cortical Pyramidal Neuron. Journal of Neurophysiology. PMID 33085562 DOI: 10.1152/jn.00734.2019  0.59
2020 Dai K, Hernando J, Billeh YN, Gratiy SL, Planas J, Davison AP, Dura-Bernal S, Gleeson P, Devresse A, Dichter BK, Gevaert M, King JG, Van Geit WAH, Povolotsky AV, Muller E, et al. The SONATA data format for efficient description of large-scale network models. Plos Computational Biology. 16: e1007696. PMID 32092054 DOI: 10.1371/Journal.Pcbi.1007696  0.418
2020 Peng GCY, Alber M, Tepole AB, Cannon WR, De S, Dura-Bernal S, Garikipati K, Karniadakis G, Lytton WW, Perdikaris P, Petzold L, Kuhl E. Multiscale Modeling Meets Machine Learning: What Can We Learn? Archives of Computational Methods in Engineering. 1-21. DOI: 10.1007/S11831-020-09405-5  0.334
2019 Alber M, Buganza Tepole A, Cannon WR, De S, Dura-Bernal S, Garikipati K, Karniadakis G, Lytton WW, Perdikaris P, Petzold L, Kuhl E. Integrating machine learning and multiscale modeling-perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences. Npj Digital Medicine. 2: 115. PMID 31799423 DOI: 10.1038/S41746-019-0193-Y  0.596
2019 Gleeson P, Cantarelli M, Marin B, Quintana A, Earnshaw M, Sadeh S, Piasini E, Birgiolas J, Cannon RC, Cayco-Gajic NA, Crook S, Davison AP, Dura-Bernal S, Ecker A, Hines ML, et al. Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. Neuron. PMID 31201122 DOI: 10.1016/J.Neuron.2019.05.019  0.653
2019 Dura-Bernal S, Suter BA, Gleeson P, Cantarelli M, Quintana A, Rodriguez F, Kedziora DJ, Chadderdon GL, Kerr CC, Neymotin SA, McDougal RA, Hines M, Shepherd GMG, Lytton WW. NetPyNE, a tool for data-driven multiscale modeling of brain circuits. Elife. 8. PMID 31025934 DOI: 10.7554/Elife.44494  0.795
2019 Dura-Bernal S, Suter BA, Gleeson P, Cantarelli M, Quintana A, Rodriguez F, Kedziora DJ, Chadderdon GL, Kerr CC, Neymotin SA, McDougal RA, Hines M, Shepherd GM, Lytton WW. Author response: NetPyNE, a tool for data-driven multiscale modeling of brain circuits Elife. DOI: 10.7554/Elife.44494.016  0.77
2018 Cantarelli M, Marin B, Quintana A, Earnshaw M, Court R, Gleeson P, Dura-Bernal S, Silver RA, Idili G. Geppetto: a reusable modular open platform for exploring neuroscience data and models. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 30201843 DOI: 10.1098/Rstb.2017.0380  0.458
2017 Dura-Bernal S, Neymotin SA, Kerr CC, Sivagnanam S, Majumdar A, Francis JT, Lytton WW. Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. Ibm Journal of Research and Development. 61: 6.1-6.14. PMID 29200477 DOI: 10.1147/Jrd.2017.2656758  0.763
2017 Neymotin SA, Suter BA, Dura-Bernal S, Shepherd GM, Migliore M, Lytton WW. Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. Journal of Neurophysiology. 117: 148-162. PMID 27760819 DOI: 10.1152/Jn.00570.2016  0.796
2017 Newton AJH, Seidenstein AH, McDougal RA, Pérez-Cervera A, Huguet G, M-Seara T, Haimerl C, Angulo-Garcia D, Torcini A, Cossart R, Malvache A, Skiker K, Maouene M, Ragognetti G, Lorusso L, ... ... Dura-Bernal S, et al. 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 Bmc Neuroscience. 18. DOI: 10.1186/S12868-017-0372-1  0.739
2017 Rubchinsky LL, Ahn S, Klijn W, Cumming B, Yates S, Karakasis V, Peyser A, Woodman M, Diaz-Pier S, Deraeve J, Vassena E, Alexander W, Beeman D, Kudela P, Boatman-Reich D, ... ... Dura-Bernal S, et al. 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2 Bmc Neuroscience. 18. DOI: 10.1186/S12868-017-0371-2  0.701
2017 Denham S, Poirazi P, De Schutter E, Friston K, Chan HK, Nowotny T, Han D, Hong S, Rosay S, Wernle T, Treves A, Goethals S, Brette R, Van Pottelbergh T, Sepulchre R, ... ... Dura-Bernal S, et al. 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1 Bmc Neuroscience. 18. DOI: 10.1186/S12868-017-0370-3  0.556
2016 Neymotin SA, Dura-Bernal S, Moreno H, Lytton WW. Computer modeling for pharmacological treatments for dystonia. Drug Discovery Today. Disease Models. 19: 51-57. PMID 28983321 DOI: 10.1016/J.Ddmod.2017.02.003  0.726
2016 Lytton WW, Seidenstein AH, Dura-Bernal S, McDougal RA, Schürmann F, Hines ML. Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Computation. 1-28. PMID 27557104 DOI: 10.1162/Neco_A_00876  0.625
2016 Sharpee TO, Destexhe A, Kawato M, Sekulić V, Skinner FK, Wójcik DK, Chintaluri C, Cserpán D, Somogyvári Z, Kim JK, Kilpatrick ZP, Bennett MR, Josić K, Elices I, Arroyo D, ... ... Dura-Bernal S, et al. 25th Annual Computational Neuroscience Meeting: CNS-2016 Bmc Neuroscience. 17: 54. PMID 27534393 DOI: 10.1186/S12868-016-0283-6  0.734
2016 Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW. Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Frontiers in Pharmacology. 7: 157. PMID 27378922 DOI: 10.3389/Fphar.2016.00157  0.761
2016 Dura-Bernal S, Li K, Neymotin SA, Francis JT, Principe JC, Lytton WW. Restoring Behavior via Inverse Neurocontroller in a Lesioned Cortical Spiking Model Driving a Virtual Arm. Frontiers in Neuroscience. 10: 28. PMID 26903796 DOI: 10.3389/Fnins.2016.00028  0.756
2015 Dura-Bernal S, Zhou X, Neymotin SA, Przekwas A, Francis JT, Lytton WW. Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm. Frontiers in Neurorobotics. 9: 13. PMID 26635598 DOI: 10.3389/Fnbot.2015.00013  0.767
2015 Dura-Bernal S, Kerr CC, Neymotin SA, Suter BA, Shepherd GM, Francis JT, Lytton WW. Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-P153  0.784
2015 Neymotin SA, Suter BA, Migliore M, Dura-Bernal S, Shepherd GM, Lytton WW. Motor cortex neurons: from experiment to model via evolutionary algorithms Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-P152  0.788
2015 Choi JS, Menzies RJ, Dura-Bernal S, Francis JT, Lytton WW, Kerr CC. Spiking network modeling of neuronal dynamics in individual rats Bmc Neuroscience. 16: P122. DOI: 10.1186/1471-2202-16-S1-P122  0.641
2015 Li K, Dura-Bernal S, Francis JT, Lytton WW, Principe JC. Repairing lesions via kernel adaptive inverse control in a biomimetic model of sensorimotor cortex International Ieee/Embs Conference On Neural Engineering, Ner. 2015: 478-481. DOI: 10.1109/NER.2015.7146663  0.525
2014 Dura-Bernal S, Chadderdon GL, Neymotin SA, Francis JT, Lytton WW. Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm. Pattern Recognition Letters. 36: 204-212. PMID 26709323 DOI: 10.1016/J.Patrec.2013.05.019  0.747
2014 Lee G, Matsunaga A, Dura-Bernal S, Zhang W, Lytton WW, Francis JT, Fortes JA. Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models. Journal of Computational Surgery. 3: 1-23. PMID 26702394 DOI: 10.1186/S40244-014-0012-3  0.625
2014 Kerr CC, O'Shea DJ, Goo W, Dura-Bernal S, Francis JT, Diester I, Kalanithi P, Deisseroth K, Shenoy KV, Lytton WW. Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-P107  0.641
2014 Dura-Bernal S, Li K, Brockmeier AJ, Kerr CC, Neymotin SA, Principe JC, Francis JT, Lytton WW. Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-P106  0.767
2014 Dura-Bernal S, Chadderdon GL, Neymotin SA, Francis JT, Lytton WW. Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm Pattern Recognition Letters. 36: 204-212. DOI: 10.1016/j.patrec.2013.05.019  0.711
2013 Dura-Bernal S, Garreau G, Georgiou J, Andreou AG, Denham SL, Wennekers T. Multimodal integration of micro-Doppler sonar and auditory signals for behavior classification with convolutional networks. International Journal of Neural Systems. 23: 1350021. PMID 23924412 DOI: 10.1142/S0129065713500214  0.608
2013 Dura-Bernal S, Chadderdon GL, Neymotin SA, Zhou X, Przekwas A, Francis JT, Lytton WW. Virtual musculoskeletal arm and robotic arm driven by a biomimetic model of sensorimotor cortex with reinforcement learning 2013 Ieee Signal Processing in Medicine and Biology Symposium, Spmb 2013. DOI: 10.1109/SPMB.2013.6736768  0.711
2012 Dura-Bernal S, Wennekers T, Denham SL. Top-down feedback in an HMAX-like cortical model of object perception based on hierarchical Bayesian networks and belief propagation. Plos One. 7: e48216. PMID 23139765 DOI: 10.1371/Journal.Pone.0048216  0.663
2011 Dura-Bernal S, Wennekers T, Denham SL. The role of feedback in a hierarchical model of object perception. Advances in Experimental Medicine and Biology. 718: 165-79. PMID 21744218 DOI: 10.1007/978-1-4614-0164-3_14  0.637
2011 Dura-Bernal S, Wennekers T, Denham SL. Modelling object perception in cortex: Hierarchical Bayesian networks and belief propagation 2011 45th Annual Conference On Information Sciences and Systems, Ciss 2011. DOI: 10.1109/CISS.2011.5766096  0.591
2011 Garreau G, Andreou CM, Andreou AG, Georgiou J, Dura-Bernal S, Wennekers T, Denham S. Gait-based person and gender recognition using micro-doppler signatures 2011 Ieee Biomedical Circuits and Systems Conference, Biocas 2011. 444-447. DOI: 10.1109/BioCAS.2011.6107823  0.508
2011 Dura-Bernal S, Garreau G, Andreou C, Andreou A, Georgiou J, Wennekers T, Denham S. Human action categorization using ultrasound micro-Doppler signatures Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7065: 18-28. DOI: 10.1007/978-3-642-25446-8_3  0.518
Low-probability matches (unlikely to be authored by this person)
2023 Borges FS, Protachevicz PR, Souza DLM, Bittencourt CF, Gabrick EC, Bentivoglio LE, Szezech JD, Batista AM, Caldas IL, Dura-Bernal S, Pena RFO. The Role of Potassium and Calcium Currents in the Bistable Firing Transition. Biorxiv : the Preprint Server For Biology. PMID 37645875 DOI: 10.1101/2023.08.16.553625  0.275
2023 Borges FS, Protachevicz PR, Souza DLM, Bittencourt CF, Gabrick EC, Bentivoglio LE, Szezech JD, Batista AM, Caldas IL, Dura-Bernal S, Pena RFO. The Roles of Potassium and Calcium Currents in the Bistable Firing Transition. Brain Sciences. 13. PMID 37759949 DOI: 10.3390/brainsci13091347  0.272
2023 Ponzi A, Dura-Bernal S, Migliore M. Theta-gamma phase amplitude coupling in a hippocampal CA1 microcircuit. Plos Computational Biology. 19: e1010942. PMID 36952558 DOI: 10.1371/journal.pcbi.1010942  0.27
2018 Kerr CC, Dura-Bernal S, Smolinski TG, Chadderdon GL, Wilson DP. Optimization by Adaptive Stochastic Descent. Plos One. 13: e0192944. PMID 29547665 DOI: 10.1371/Journal.Pone.0192944  0.261
2024 Varela C, Moreira JVS, Kocaoglu B, Dura-Bernal S, Ahmad S. A mechanism for deviance detection and contextual routing in the thalamus: a review and theoretical proposal. Frontiers in Neuroscience. 18: 1359180. PMID 38486972 DOI: 10.3389/fnins.2024.1359180  0.186
2013 Ramenahalli S, Mendat DR, Dura-Bernal S, Culurciello E, Niebur E, Andreou A. Audio-visual saliency map: Overview, basic models and hardware implementation 2013 47th Annual Conference On Information Sciences and Systems, Ciss 2013. DOI: 10.1109/CISS.2013.6552285  0.139
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