Daniel Martins-de-Souza - Related publications

Max Planck Institute of Psychiatry 
Proteomics, Psychiatry, Biomarkers, Schizophrenia, Depression, Mass Spectrometry
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Yin B, Caggiano LR, Li RC, McGowan E, Holmes JW, Ewald SE. Automated Spatially Targeted Optical Microproteomics Investigates Inflammatory Lesions . Journal of Proteome Research. PMID 34436902 DOI: 10.1021/acs.jproteome.1c00505   
2021 Wippel HH, Chavez JD, Tang X, Bruce JE. Quantitative interactome analysis with chemical cross-linking and mass spectrometry. Current Opinion in Chemical Biology. PMID 34393043 DOI: 10.1016/j.cbpa.2021.06.011   
2021 Chepyala SR, Liu X, Yang K, Wu Z, Breuer AM, Cho JH, Li Y, Mancieri A, Jiao Y, Zhang H, Peng J. JUMPt: Comprehensive Protein Turnover Modeling of In Vivo Pulse SILAC Data by Ordinary Differential Equations. Analytical Chemistry. PMID 34587451 DOI: 10.1021/acs.analchem.1c02309   
2021 Smythers AL, Iannetta AA, Hicks LM. Crosslinking mass spectrometry unveils novel interactions and structural distinctions in the model green alga . Molecular Omics. PMID 34499065 DOI: 10.1039/d1mo00197c   
2021 Huang J, Khademi M, Lindhe Ö, Jönsson G, Piehl F, Olsson T, Kockum I. Assessing the preanalytical variability of plasma and cerebrospinal fluid processing and its effects on inflammation-related protein biomarkers. Molecular & Cellular Proteomics : McP. 100157. PMID 34597789 DOI: 10.1016/j.mcpro.2021.100157   
2021 Shao D, Huang L, Wang Y, Cui X, Li Y, Wang Y, Ma Q, Du W, Cui J. HBFP: a new repository for human body fluid proteome. Database : the Journal of Biological Databases and Curation. 2021. PMID 34642750 DOI: 10.1093/database/baab065   
2021 Maldonado-Torres DA, Jara-Romero GJ, Rosas-Cárdenas FF, Fernández-Velasco DA, Luna-Suárez S. Engineering Concanavalin B to Release Bioactive Peptides against Metabolic Syndrome. Foods (Basel, Switzerland). 10. PMID 34359424 DOI: 10.3390/foods10071554   
2021 Cui Y, Wang X, Xu J, Liu X, Wang X, Pang J, Song Y, Yu M, Song W, Luo X, Liu M, Sun S. PROTEOMIC ANALYSIS OF TAENIA SOLIUM CYST FLUID BY SHOTGUN LC-MS/MS. The Journal of Parasitology. 107: 799-809. PMID 34648630 DOI: 10.1645/20-65   
2021 Reyes CDG, Jiang P, Atashi M, Bennett A, Yu A, Peng W, Zhong J, Mechref Y. Advances in mass Spectrometry-Based glycoproteomics - An update covering the period 2017-2021. Electrophoresis. PMID 34614238 DOI: 10.1002/elps.202100188   
2021 Ayyadevara S, Ganne A, Balasubramaniam M, Shmookler Reis RJ. Intrinsically disordered proteins identified in the aggregate proteome serve as biomarkers of neurodegeneration. Metabolic Brain Disease. PMID 34347206 DOI: 10.1007/s11011-021-00791-8   
2021 Bennett JL, Nguyen GTH, Donald WA. Protein-Small Molecule Interactions in Native Mass Spectrometry. Chemical Reviews. PMID 34449207 DOI: 10.1021/acs.chemrev.1c00293   
2021 Mao Y, Zheng J, Feng S, Tian R. [Comparison of the performance of secretome analysis based on metabolic labeling by three unnatural sugars]. SE Pu = Chinese Journal of Chromatography. 39: 1086-1093. PMID 34505430 DOI: 10.3724/SP.J.1123.2021.04017   
2021 Weaver JL, Wu W, Hyland PL, Lim R, Smpokou P, Pacanowski M. Expanding Approved Patient Populations for Rare Disease Treatment Using in vitro Data. Clinical Pharmacology and Therapeutics. PMID 34496049 DOI: 10.1002/cpt.2414   
2021 Park SY, Egan S, Cura AJ, Aron KL, Xu X, Zheng M, Borys M, Ghose S, Li Z, Lee K. Untargeted proteomics reveals upregulation of stress response pathways during CHO-based monoclonal antibody manufacturing process leading to disulfide bond reduction. Mabs. 13: 1963094. PMID 34424810 DOI: 10.1080/19420862.2021.1963094   
2021 Emenecker RJ, Griffith D, Holehouse AS. Metapredict: a fast, accurate, and easy-to-use predictor of consensus disorder and structure. Biophysical Journal. PMID 34480923 DOI: 10.1016/j.bpj.2021.08.039   
2021 Duś-Szachniewicz K, Gdesz-Birula K, Zduniak K, Wiśniewski JR. Proteomic-Based Analysis of Hypoxia- and Physioxia-Responsive Proteins and Pathways in Diffuse Large B-Cell Lymphoma. Cells. 10. PMID 34440794 DOI: 10.3390/cells10082025   
2021 Gaspar VP, Ramos AC, Cloutier P, Pattaro Junior JR, Duarte Junior FF, Bouchard A, Seixas FAV, Coulombe B, Fernandez MA. Interactome Analysis of KIN (Kin17) Shows New Functions of This Protein. Current Issues in Molecular Biology. 43: 767-781. PMID 34449532 DOI: 10.3390/cimb43020056   
2021 Yugandhar K, Zhao Q, Gupta S, Xiong D, Yu H. Progress in methodologies and quality-control strategies in protein cross-linking mass spectrometry. Proteomics. e2100145. PMID 34647422 DOI: 10.1002/pmic.202100145   
2021 Li S, Zhang Z, Li X, Tan Y, Wang L, Chen Z. An iteration model for identifying essential proteins by combining comprehensive PPI network with biological information. Bmc Bioinformatics. 22: 430. PMID 34496745 DOI: 10.1186/s12859-021-04300-7   
2021 McKenzie-Coe A, Montes NS, Jones LM. Hydroxyl Radical Protein Footprinting: A Mass Spectrometry-Based Structural Method for Studying the Higher Order Structure of Proteins. Chemical Reviews. PMID 34633178 DOI: 10.1021/acs.chemrev.1c00432   
2021 Xu M, Zhang X, Yu J, Guo Z, Li Y, Song X, He K, Li G, Chi Y. Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in in Peanuts. Frontiers in Microbiology. 12: 719337. PMID 34489910 DOI: 10.3389/fmicb.2021.719337   
2021 Balboa E, Marín T, Oyarzún JE, Contreras PS, Hardt R, van den Bosch T, Alvarez AR, Rebolledo-Jaramillo B, Klein AD, Winter D, Zanlungo S. Proteomic Analysis of Niemann-Pick Type C Hepatocytes Reveals Potential Therapeutic Targets for Liver Damage. Cells. 10. PMID 34440927 DOI: 10.3390/cells10082159   
2021 Velasquez EF, Garcia YA, Ramirez I, Gholkar AA, Torres JZ. CANVS: an easy-to-use application for the analysis and visualization of mass spectrometry-based protein-protein interaction/association data. Molecular Biology of the Cell. mbcE21050257. PMID 34432510 DOI: 10.1091/mbc.E21-05-0257   
2021 Noor Z, Paramasivan S, Ghodasara P, Chemonges S, Gupta R, Kopp S, Mills PC, Ranganathan S, Satake N, Sadowski P. Leveraging homologies for cross species plasma proteomics in ungulates using data-independent acquisition. Journal of Proteomics. 104384. PMID 34601153 DOI: 10.1016/j.jprot.2021.104384   
2021 Ma X, Zhang Q, La Y, Fu D, Jiang H, Bao P, Wu X, Chu M, Guo X, Yan P, Liang C. Differential Abundance of Brain Mitochondrial Proteins in Yak and Cattle: A Proteomics-Based Study. Frontiers in Veterinary Science. 8: 663031. PMID 34532350 DOI: 10.3389/fvets.2021.663031   
2021 Fatica EM, Martinez M, Ladwig PM, Murray JD, Kohlhagen MC, Kyle RA, Kourelis T, Lust JA, Snyder MR, Dispenzieri A, Murray DL, Willrich MAV. MALDI-TOF mass spectrometry can distinguish immunofixation bands of the same isotype as monoclonal or biclonal proteins. Clinical Biochemistry. PMID 34384797 DOI: 10.1016/j.clinbiochem.2021.08.001   
2021 Tao J, Jia S, Wang M, Huang Z, Wang B, Zhang W, Wei Y, Li W, Jiang H, Du Z. Systematic Identification of Proteins Binding with Cisplatin in Blood by Affinity Chromatography and a Four-Dimensional Proteomic Method. Journal of Proteome Research. PMID 34427088 DOI: 10.1021/acs.jproteome.1c00535   
2021 Hong G, Su X, Xu K, Liu B, Wang G, Li J, Wang R, Zhu M, Li G. Salt stress downregulates 2-hydroxybutyrylation in Arabidopsis siliques. Journal of Proteomics. 104383. PMID 34562664 DOI: 10.1016/j.jprot.2021.104383   
2021 Azizi M, Tasharofi S, Koolivand A, Oloumi A, Rion H, Khaledi MG. Improving identification of low abundance and hydrophobic proteins using fluoroalcohol mediated supramolecular biphasic systems with quaternary ammonium salts. Journal of Chromatography. A. 1655: 462483. PMID 34492580 DOI: 10.1016/j.chroma.2021.462483   
2021 Rosario FJ, Pardo S, Michelsen TM, Erickson K, Moore L, Powell TL, Weintraub ST, Jansson T. Characterization of the Primary Human Trophoblast Cell Secretome Using Stable Isotope Labeling With Amino Acids in Cell Culture. Frontiers in Cell and Developmental Biology. 9: 704781. PMID 34595166 DOI: 10.3389/fcell.2021.704781   
2021 Sierra-Fonseca JA, Hamdan JN, Cohen AA, Cardenas SM, Saucedo S, Lodoza GA, Gosselink KL. Neonatal Maternal Separation Modifies Proteostasis Marker Expression in the Adult Hippocampus. Frontiers in Molecular Neuroscience. 14: 661993. PMID 34447296 DOI: 10.3389/fnmol.2021.661993   
2021 Matsui Y, Abe Y, Uno K, Miyano S. RoDiCE: robust differential protein co-expression analysis for cancer complexome. Bioinformatics (Oxford, England). PMID 34529752 DOI: 10.1093/bioinformatics/btab612   
2021 Zeng L, Chen N, Liao J, Shen X, Song S, Wang F. Metabolic Analysis of Potential Key Genes Associated with Systemic Lupus Erythematosus Using Liquid Chromatography-Mass Spectrometry. Computational and Mathematical Methods in Medicine. 2021: 5799348. PMID 34646335 DOI: 10.1155/2021/5799348   
2021 Collins JM, Wang D. Cytochrome P450 3A4 (CYP3A4) protein quantification using capillary western blot technology and total protein normalization. Journal of Pharmacological and Toxicological Methods. 107117. PMID 34474151 DOI: 10.1016/j.vascn.2021.107117   
2021 Leissing F, Misch NV, Wang X, Werner L, Huang L, Conrath U, Beckers GJM. Purification of MAP-kinase protein complexes and identification of candidate components by XL-TAP-MS. Plant Physiology. PMID 34609515 DOI: 10.1093/plphys/kiab446   
2021 Lucas FLR, Versloot RCA, Yakovlieva L, Walvoort MTC, Maglia G. Protein identification by nanopore peptide profiling. Nature Communications. 12: 5795. PMID 34608150 DOI: 10.1038/s41467-021-26046-9   
2021 Lv R, Liu D, Wang W, Xu E, Ding T, Ye X, Zhou J. Proteomic response and molecular regulatory mechanisms of Bacillus cereus spores under ultrasound treatment. Ultrasonics Sonochemistry. 78: 105732. PMID 34474268 DOI: 10.1016/j.ultsonch.2021.105732   
2021 Chan WKB, DasGupta D, Carlson HA, Traynor JR. Mixed-solvent molecular dynamics simulation-based discovery of a putative allosteric site on regulator of G protein signaling 4. Journal of Computational Chemistry. PMID 34494289 DOI: 10.1002/jcc.26747   
2021 Li M, Zheng K, Song W, Yu H, Zhang X, Yue X, Li Q. Quantitative analysis of differentially expressed milk fat globule membrane proteins between donkey and bovine colostrum based on high-performance liquid chromatography with tandem mass spectrometry proteomics. Journal of Dairy Science. PMID 34531055 DOI: 10.3168/jds.2021-20471   
2021 Drelich L, Aboulouard S, Franck J, Salzet M, Fournier I, Wisztorski M. Toward High Spatially Resolved Proteomics Using Expansion Microscopy. Analytical Chemistry. PMID 34449217 DOI: 10.1021/acs.analchem.0c05372   
2021 Liang YJ, Yang YR, Tao CY, Yang SH, Zhang XX, Yuan J, Deng YH, Zhong ZQ, Yu SG, Xiong XY. Deep Succinylproteomics of Brain Tissues from Intracerebral Hemorrhage with Inhibition of Toll-Like Receptor 4 Signaling. Cellular and Molecular Neurobiology. PMID 34460038 DOI: 10.1007/s10571-021-01144-w   
2021 Corpas-Lopez V, Wyllie S. Utilizing thermal proteome profiling to identify the molecular targets of anti-leishmanial compounds. Star Protocols. 2: 100704. PMID 34467225 DOI: 10.1016/j.xpro.2021.100704   
2021 Shen D, Bai Y, Liu Y. Chemical Biology Toolbox to Visualize Protein Aggregation in Live Cells. Chembiochem : a European Journal of Chemical Biology. PMID 34613660 DOI: 10.1002/cbic.202100443   
2021 Zeng X, Xiang Y, Liu Q, Wang L, Ma Q, Ma W, Zeng D, Yin Y, Wang D. Nanopore Technology for the Application of Protein Detection. Nanomaterials (Basel, Switzerland). 11. PMID 34443773 DOI: 10.3390/nano11081942   
2021 Li S, Jin E, Shi X, Cai Y, Zhang H, Zhao M. Proteomics of Vitreous Humor Reveals PPARA, RXR, and LXR Are Possible Upstream Regulators of Proliferative Diabetic Retinopathy. Frontiers in Medicine. 8: 724695. PMID 34485353 DOI: 10.3389/fmed.2021.724695   
2021 Kong W, Wong BJ, Gao H, Guo T, Liu X, Du X, Wong L, Goh WWB. PROTREC: A probability-based approach for recovering missing proteins based on biological networks. Journal of Proteomics. 104392. PMID 34626823 DOI: 10.1016/j.jprot.2021.104392   
2021 Wu Y, Shen YB. Sulfuric Acid and Gibberellic Acid (GA) Treatment Combined with Exposure to Cold Temperature Modulates Seed Proteins during Breaking of Dormancy to Germination in Tilia miqueliana. The Protein Journal. PMID 34480247 DOI: 10.1007/s10930-021-10018-5   
2021 Kim SJ, Dixon AS, Owen SC. Split-enzyme Immunoassay to Monitor EGFR-HER2 Heterodimerization on Cell Surfaces. Acta Biomaterialia. PMID 34496282 DOI: 10.1016/j.actbio.2021.08.055   
2021 Cruz CAK, Medina PMB. Diversity in the Accessory Proteins of SARS-CoV-2, SARS-CoV, and MERS-CoV Betacoronaviruses. Current Protein & Peptide Science. PMID 34514989 DOI: 10.2174/1389203722666210910111055   
2021 Li M, Zheng X, Shanker S, Jaroentomeechai T, Moeller TD, Hulbert SW, Koçer I, Byrne J, Cox EC, Fu Q, Zhang S, Labonte JW, Gray JJ, DeLisa MP. Shotgun scanning glycomutagenesis: A simple and efficient strategy for constructing and characterizing neoglycoproteins. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34551980 DOI: 10.1073/pnas.2107440118