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Andrew JG Simpson - Publications

Affiliations: 
Ludwig Institute for Cancer Research Ludwig Institute for Cancer Research, San Diego, CA, United States 
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2009 Felix RS, Colleoni GW, Caballero OL, Yamamoto M, Almeida MS, Andrade VC, Chauffaille Mde L, Silva WA, Begnami MD, Soares FA, Simpson AJ, Zago MA, Vettore AL. SAGE analysis highlights the importance of p53csv, ddx5, mapkapk2 and ranbp2 to multiple myeloma tumorigenesis. Cancer Letters. 278: 41-8. PMID 19171422 DOI: 10.1016/J.Canlet.2008.12.022  0.363
2007 Maia RM, Valente V, Cunha MA, Sousa JF, Araujo DD, Silva WA, Zago MA, Dias-Neto E, Souza SJ, Simpson AJ, Monesi N, Ramos RG, Espreafico EM, Paçó-Larson ML. Identification of unannotated exons of low abundance transcripts in Drosophila melanogaster and cloning of a new serine protease gene upregulated upon injury. Bmc Genomics. 8: 249. PMID 17650329 DOI: 10.1186/1471-2164-8-249  0.58
2007 Felix RS, Colleoni GWB, Vettore AL, Yamamoto M, Almeida MSS, Andrade VCC, Chauffaille MdLLF, Silva WAd, Caballero OL, Simpson AJ, Zago MA. Identification of Genes with Prognostic and Therapeutic Relevance in Multiple Myeloma Using Serial Analysis of Gene Expression Technique. Blood. 110: 4734-4734. DOI: 10.1182/Blood.V110.11.4734.4734  0.375
2004 Ferreira EN, Pires LC, Parmigiani RB, Bettoni F, Puga RD, Pinheiro DG, Andrade LE, Cruz LO, Degaki TL, Faria M, Festa F, Giannella-Neto D, Giorgi RR, Goldman GH, Granja F, ... ... Simpson AJ, et al. Identification and complete sequencing of novel human transcripts through the use of mouse orthologs and testis cDNA sequences. Genetics and Molecular Research : Gmr. 3: 493-511. PMID 15688316  0.35
2004 Nunes FM, Valente V, Sousa JF, Cunha MA, Pinheiro DG, Maia RM, Araujo DD, Costa MC, Martins WK, Carvalho AF, Monesi N, Nascimento AM, Peixoto PM, Silva MF, Ramos RG, ... ... Simpson AJ, et al. The use of Open Reading frame ESTs (ORESTES) for analysis of the honey bee transcriptome. Bmc Genomics. 5: 84. PMID 15527499 DOI: 10.1186/1471-2164-5-84  0.576
2004 Sogayar MC, Camargo AA, Bettoni F, Carraro DM, Pires LC, Parmigiani RB, Ferreira EN, de Sá Moreira E, do Rosário D de O Latorre M, Simpson AJ, Cruz LO, Degaki TL, Festa F, Massirer KB, Sogayar MC, et al. A transcript finishing initiative for closing gaps in the human transcriptome. Genome Research. 14: 1413-23. PMID 15197164 DOI: 10.1101/gr.2111304  0.311
2004 Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, ... ... Simpson AJ, et al. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. Plos Biology. 2: e162. PMID 15103394 DOI: 10.1371/Journal.Pbio.0020162  0.419
2004 Carraro DM, Camargo AA, Salim AC, Gonzaga L, Costa GC, Vasconcelos AT, Simpson AJ. Closure of rRNA related gaps in the Chromobacterium violaceum genome with the PCR-assisted contig extension (PACE) protocol. Genetics and Molecular Research : Gmr. 3: 53-63. PMID 15100987  0.316
2003 Brentani H, Caballero OL, Camargo AA, da Silva AM, da Silva WA, Dias Neto E, Grivet M, Gruber A, Guimaraes PE, Hide W, Iseli C, Jongeneel CV, Kelso J, Nagai MA, Ojopi EP, ... ... Simpson AJ, et al. The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags. Proceedings of the National Academy of Sciences of the United States of America. 100: 13418-23. PMID 14593198 DOI: 10.1073/Pnas.1233632100  0.345
2002 Van Sluys MA, Monteiro-Vitorello CB, Camargo LE, Menck CF, Da Silva AC, Ferro JA, Oliveira MC, Setubal JC, Kitajima JP, Simpson AJ. Comparative genomic analysis of plant-associated bacteria. Annual Review of Phytopathology. 40: 169-89. PMID 12147758 DOI: 10.1146/Annurev.Phyto.40.030402.090559  0.347
2002 Reymond A, Camargo AA, Deutsch S, Stevenson BJ, Parmigiani RB, Ucla C, Bettoni F, Rossier C, Lyle R, Guipponi M, de Souza S, Iseli C, Jongeneel CV, Bucher P, Simpson AJ, et al. Nineteen additional unpredicted transcripts from human chromosome 21. Genomics. 79: 824-32. PMID 12036297 DOI: 10.1006/geno.2002.6781  0.328
2002 Camargo AA, de Souza SJ, Brentani RR, Simpson AJ. Human gene discovery through experimental definition of transcribed regions of the human genome. Current Opinion in Chemical Biology. 6: 13-6. PMID 11827817 DOI: 10.1016/S1367-5931(01)00279-4  0.32
2001 Simpson AJ, de Souza SJ, Camargo AA, Brentani RR. Definition of the gene content of the human genome: the need for deep experimental verification. Comparative and Functional Genomics. 2: 169-75. PMID 18628909 DOI: 10.1002/Cfg.81  0.326
2001 Camargo AA, Nunes DN, Samaia HB, Liu L, Collins VP, Simpson AJ, Dias-Neto E. Molecular characterization of DDX26, a human DEAD-box RNA helicase, located on chromosome 7p12. Brazilian Journal of Medical and Biological Research = Revista Brasileira De Pesquisas Mã©Dicas E Biolã³Gicas / Sociedade Brasileira De Biofã­Sica ... [Et Al.]. 34: 1237-45. PMID 11593297 DOI: 10.1590/S0100-879X2001001000002  0.528
2001 Camargo AA, Samaia HP, Dias-Neto E, Simão DF, Migotto IA, Briones MR, Costa FF, Nagai MA, Verjovski-Almeida S, Zago MA, Andrade LE, Carrer H, El-Dorry HF, Espreafico EM, Habr-Gama A, ... ... Simpson AJ, et al. The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome. Proceedings of the National Academy of Sciences of the United States of America. 98: 12103-8. PMID 11593022 DOI: 10.1073/Pnas.201182798  0.577
2000 de Souza SJ, Camargo AA, Briones MR, Costa FF, Nagai MA, Verjovski-Almeida S, Zago MA, Andrade LE, Carrer H, El-Dorry HF, Espreafico EM, Habr-Gama A, Giannella-Neto D, Goldman GH, Gruber A, ... ... Simpson AJ, et al. Identification of human chromosome 22 transcribed sequences with ORF expressed sequence tags. Proceedings of the National Academy of Sciences of the United States of America. 97: 12690-3. PMID 11070084 DOI: 10.1073/Pnas.97.23.12690  0.568
2000 Simpson AJ, Reinach FC, Arruda P, Abreu FA, Acencio M, Alvarenga R, Alves LM, Araya JE, Baia GS, Baptista CS, Barros MH, Bonaccorsi ED, Bordin S, Bové JM, Briones MR, et al. The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis. Nature. 406: 151-9. PMID 10910347 DOI: 10.1038/35018003  0.552
2000 Dias Neto E, Correa RG, Verjovski-Almeida S, Briones MR, Nagai MA, da Silva W, Zago MA, Bordin S, Costa FF, Goldman GH, Carvalho AF, Matsukuma A, Baia GS, Simpson DH, Brunstein A, ... ... Simpson AJ, et al. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Proceedings of the National Academy of Sciences of the United States of America. 97: 3491-6. PMID 10737800 DOI: 10.1073/Pnas.97.7.3491  0.35
1997 Jannotti-Passos LK, Vidigal TH, Dias-Neto E, Pena SD, Simpson AJ, Dutra WO, Souza CP, Carvalho-Parra JF. PCR amplification of the mitochondrial DNA minisatellite region to detect Schistosoma mansoni infection in Biomphalaria glabrata snails. The Journal of Parasitology. 83: 395-9. PMID 9194818 DOI: 10.2307/3284400  0.465
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