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Michaël Ryckelynck - Publications

Affiliations: 
2006-2012 Institut de Science et d'Ingénierie Supramoléculaires Université Louis Pasteur 
 2012- Institut de Biologie Moléculaire et Cellulaire Université de Strasbourg 
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Husser C, Vuilleumier S, Ryckelynck M. FluorMango, an RNA-Based Fluorogenic Biosensor for the Direct and Specific Detection of Fluoride. Small (Weinheim An Der Bergstrasse, Germany). e2205232. PMID 36436882 DOI: 10.1002/smll.202205232  0.42
2022 Husser C, Baudrey S, Ryckelynck M. High-Throughput Development and Optimization of RNA-Based Fluorogenic Biosensors of Small Molecules Using Droplet-Based Microfluidics. Methods in Molecular Biology (Clifton, N.J.). 2570: 243-269. PMID 36156788 DOI: 10.1007/978-1-0716-2695-5_19  0.361
2022 Fam KT, Pelletier R, Bouhedda F, Ryckelynck M, Collot M, Klymchenko AS. Rational Design of Self-Quenched Rhodamine Dimers as Fluorogenic Aptamer Probes for Live-Cell RNA Imaging. Analytical Chemistry. PMID 35486532 DOI: 10.1021/acs.analchem.1c04556  0.737
2022 Geraci I, Autour A, Pietruschka G, Shiian A, Borisova M, Mayer C, Ryckelynck M, Mayer G. Fluorogenic RNA-Based Biosensor to Sense the Glycolytic Flux in Mammalian Cells. Acs Chemical Biology. PMID 35427113 DOI: 10.1021/acschembio.2c00100  0.316
2021 Cubi R, Bouhedda F, Collot M, Klymchenko AS, Ryckelynck M. µIVC-Useq: a microfluidic-assisted high-throughput functionnal screening in tandem with next generation sequencing and artificial neural network to rapidly characterize RNA molecules. Rna (New York, N.Y.). PMID 33952671 DOI: 10.1261/rna.077586.120  0.375
2021 Bouhedda F, Cubi R, Baudrey S, Ryckelynck M. μIVC-Seq: A Method for Ultrahigh-Throughput Development and Functional Characterization of Small RNAs. Methods in Molecular Biology (Clifton, N.J.). 2300: 203-237. PMID 33792882 DOI: 10.1007/978-1-0716-1386-3_17  0.389
2020 Ryckelynck M. Development and Applications of Fluorogen/Light-Up RNA Aptamer Pairs for RNA Detection and More. Methods in Molecular Biology (Clifton, N.J.). 2166: 73-102. PMID 32710404 DOI: 10.1007/978-1-0716-0712-1_5  0.507
2020 Trachman RJ, Cojocaru R, Wu D, Piszczek G, Ryckelynck M, Unrau PJ, Ferré-D'Amaré AR. Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair. Structure (London, England : 1993). PMID 32386573 DOI: 10.1016/J.Str.2020.04.007  0.497
2020 Pernod K, Schaeffer L, Chicher J, Hok E, Rick C, Geslain R, Eriani G, Westhof E, Ryckelynck M, Martin F. The nature of the purine at position 34 in tRNAs of 4-codon boxes is correlated with nucleotides at positions 32 and 38 to maintain decoding fidelity. Nucleic Acids Research. PMID 32266934 DOI: 10.1093/Nar/Gkaa221  0.397
2019 Bouhedda F, Fam KT, Collot M, Autour A, Marzi S, Klymchenko A, Ryckelynck M. A dimerization-based fluorogenic dye-aptamer module for RNA imaging in live cells. Nature Chemical Biology. PMID 31636432 DOI: 10.1038/S41589-019-0381-8  0.74
2019 Ryckelynck M. Development and engineering of artificial RNAs. Methods (San Diego, Calif.). 161: 1-2. PMID 31195094 DOI: 10.1016/J.Ymeth.2019.06.009  0.388
2019 Trachman RJ, Autour A, Jeng SCY, Abdolahzadeh A, Andreoni A, Cojocaru R, Garipov R, Dolgosheina EV, Knutson JR, Ryckelynck M, Unrau PJ, Ferré-D'Amaré AR. Structure and functional reselection of the Mango-III fluorogenic RNA aptamer. Nature Chemical Biology. 15: 472-479. PMID 30992561 DOI: 10.2210/Pdb6E8S/Pdb  0.445
2019 Autour A, Bouhedda F, Cubi R, Ryckelynck M. Optimization of fluorogenic RNA-based biosensors using droplet-based microfluidic ultrahigh-throughput screening. Methods (San Diego, Calif.). PMID 30902664 DOI: 10.1016/J.Ymeth.2019.03.015  0.409
2018 Trachman R, Abdolahzadeh A, Andreoni A, Cojocaru R, Knutson JR, Ryckelynck M, Unrau PJ, Ferré-D'Amaré A. Crystal structures of the Mango-II RNA aptamer reveal heterogeneous fluorophore binding and guide engineering of variants with improved selectivity and brightness. Biochemistry. PMID 29768001 DOI: 10.1021/Acs.Biochem.8B00399  0.461
2018 Autour A, C Y Jeng S, D Cawte A, Abdolahzadeh A, Galli A, Panchapakesan SSS, Rueda D, Ryckelynck M, Unrau PJ. Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells. Nature Communications. 9: 656. PMID 29440634 DOI: 10.1038/S41467-018-02993-8  0.513
2018 Cawte A, Jeng S, Autour A, Ryckelynck M, Unrau P, Rueda D. Cellular Imaging of Small RNAs using Fluorescent RNA-Mango Aptamers Biophysical Journal. 114: 215a-216a. DOI: 10.1016/J.Bpj.2017.11.1203  0.478
2017 Bouhedda F, Autour A, Ryckelynck M. Light-Up RNA Aptamers and Their Cognate Fluorogens: From Their Development to Their Applications. International Journal of Molecular Sciences. 19. PMID 29295531 DOI: 10.3390/Ijms19010044  0.501
2017 Fernandez-Millan P, Autour A, Ennifar E, Westhof E, Ryckelynck M. Crystal structure and fluorescence properties of the iSpinach aptamer in complex with DFHBI. Rna (New York, N.Y.). PMID 28939697 DOI: 10.1261/Rna.063008.117  0.388
2017 Autour A, Ryckelynck M. Ultrahigh-Throughput Improvement and Discovery of Enzymes Using Droplet-Based Microfluidic Screening Micromachines. 8: 128. DOI: 10.3390/Mi8040128  0.364
2016 Matsumura S, Kun Á, Ryckelynck M, Coldren F, Szilágyi A, Jossinet F, Rick C, Nghe P, Szathmáry E, Griffiths AD. Transient compartmentalization of RNA replicators prevents extinction due to parasites. Science (New York, N.Y.). 354: 1293-1296. PMID 27940874 DOI: 10.1126/Science.Aag1582  0.681
2016 Autour A, Westhof E, Ryckelynck M. iSpinach: a fluorogenic RNA aptamer optimized for in vitro applications. Nucleic Acids Research. 44: 2491-500. PMID 26932363 DOI: 10.1093/Nar/Gkw083  0.48
2015 Woronoff G, Ryckelynck M, Wessel J, Schicke O, Griffiths AD, Soumillion P. Activity-Fed Translation (AFT) Assay: A New High-Throughput Screening Strategy for Enzymes in Droplets. Chembiochem : a European Journal of Chemical Biology. 16: 1343-9. PMID 25914325 DOI: 10.1002/Cbic.201500087  0.709
2015 Ryckelynck M, Baudrey S, Rick C, Marin A, Coldren F, Westhof E, Griffiths AD. Using droplet-based microfluidics to improve the catalytic properties of RNA under multiple-turnover conditions. Rna (New York, N.Y.). 21: 458-69. PMID 25605963 DOI: 10.1261/Rna.048033.114  0.736
2012 Fallah-Araghi A, Baret JC, Ryckelynck M, Griffiths AD. A completely in vitro ultrahigh-throughput droplet-based microfluidic screening system for protein engineering and directed evolution. Lab On a Chip. 12: 882-91. PMID 22277990 DOI: 10.1039/C2Lc21035E  0.697
2012 Najah M, Griffiths AD, Ryckelynck M. Teaching single-cell digital analysis using droplet-based microfluidics. Analytical Chemistry. 84: 1202-9. PMID 22229495 DOI: 10.1021/Ac202645M  0.679
2011 Woronoff G, El Harrak A, Mayot E, Schicke O, Miller OJ, Soumillion P, Griffiths AD, Ryckelynck M. New generation of amino coumarin methyl sulfonate-based fluorogenic substrates for amidase assays in droplet-based microfluidic applications. Analytical Chemistry. 83: 2852-7. PMID 21413778 DOI: 10.1021/Ac200373N  0.7
2009 Mazutis L, Baret JC, Treacy P, Skhiri Y, Araghi AF, Ryckelynck M, Taly V, Griffiths AD. Multi-step microfluidic droplet processing: kinetic analysis of an in vitro translated enzyme. Lab On a Chip. 9: 2902-8. PMID 19789742 DOI: 10.1039/B907753G  0.703
2009 Baret JC, Taly V, Ryckelynck M, Merten CA, Griffiths AD. [Droplets and emulsions: very high-throughput screening in biology]. Medecine Sciences : M/S. 25: 627-32. PMID 19602361 DOI: 10.1051/Medsci/2009256-7627  0.696
2009 Baret JC, Miller OJ, Taly V, Ryckelynck M, El-Harrak A, Frenz L, Rick C, Samuels ML, Hutchison JB, Agresti JJ, Link DR, Weitz DA, Griffiths AD. Fluorescence-activated droplet sorting (FADS): efficient microfluidic cell sorting based on enzymatic activity. Lab On a Chip. 9: 1850-8. PMID 19532959 DOI: 10.1039/B902504A  0.689
2009 Mazutis L, Araghi AF, Miller OJ, Baret JC, Frenz L, Janoshazi A, Taly V, Miller BJ, Hutchison JB, Link D, Griffiths AD, Ryckelynck M. Droplet-based microfluidic systems for high-throughput single DNA molecule isothermal amplification and analysis. Analytical Chemistry. 81: 4813-21. PMID 19518143 DOI: 10.1021/Ac900403Z  0.66
2005 Ryckelynck M, Masquida B, Giegé R, Frugier M. An intricate RNA structure with two tRNA-derived motifs directs complex formation between yeast aspartyl-tRNA synthetase and its mRNA. Journal of Molecular Biology. 354: 614-29. PMID 16257416 DOI: 10.1016/J.Jmb.2005.09.063  0.558
2005 Frugier M, Ryckelynck M, Giegé R. tRNA-balanced expression of a eukaryal aminoacyl-tRNA synthetase by an mRNA-mediated pathway. Embo Reports. 6: 860-5. PMID 16113655 DOI: 10.1038/Sj.Embor.7400481  0.568
2005 Ryckelynck M, Giegé R, Frugier M. tRNAs and tRNA mimics as cornerstones of aminoacyl-tRNA synthetase regulations. Biochimie. 87: 835-45. PMID 15925436 DOI: 10.1016/J.Biochi.2005.02.014  0.561
2003 Ryckelynck M, Giegé R, Frugier M. Yeast tRNA(Asp) charging accuracy is threatened by the N-terminal extension of aspartyl-tRNA synthetase. The Journal of Biological Chemistry. 278: 9683-90. PMID 12486031 DOI: 10.1074/Jbc.M211035200  0.551
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