Ramin Homayouni - Publications

University of Memphis, Memphis, TN, United States 

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Han S, Zhang H, Homayouni R, Karmaus W. An efficient Bayesian approach for Gaussian Bayesian network structure learning. Communications in Statistics: Simulation and Computation. 46: 5070-5084. PMID 30918419 DOI: 10.1080/03610918.2016.1143103  0.56
2015 Madahian B, Roy S, Bowman D, Deng LY, Homayouni R. A Bayesian approach for inducing sparsity in generalized linear models with multi-category response. Bmc Bioinformatics. 16: S13. PMID 26423345 DOI: 10.1186/1471-2105-16-S13-S13  0.6
2015 Stanfill A, Hathaway D, Cashion A, Homayouni R, Cowan P, Thompson C, Madahian B, Conley Y. A Pilot Study of Demographic and Dopaminergic Genetic Contributions to Weight Change in Kidney Transplant Recipients. Plos One. 10: e0138885. PMID 26406335 DOI: 10.1371/journal.pone.0138885  0.6
2015 Qiao S, Homayouni R. Dab2IP Regulates Neuronal Positioning, Rap1 Activity and Integrin Signaling in the Developing Cortex. Developmental Neuroscience. 37: 131-41. PMID 25721469 DOI: 10.1159/000369092  0.6
2015 Stanfill AG, Conley Y, Cashion A, Thompson C, Homayouni R, Cowan P, Hathaway D. Neurogenetic and Neuroimaging Evidence for a Conceptual Model of Dopaminergic Contributions to Obesity. Biological Research For Nursing. 17: 413-21. PMID 25576324 DOI: 10.1177/1099800414565170  0.6
2015 Ha T, Swanson D, Larouche M, Glenn R, Weeden D, Zhang P, Hamre K, Langston M, Phillips C, Song M, Ouyang Z, Chesler E, Duvvurru S, Yordanova R, Cui Y, ... ... Homayouni R, et al. CbGRiTS: cerebellar gene regulation in time and space. Developmental Biology. 397: 18-30. PMID 25446528 DOI: 10.1016/j.ydbio.2014.09.032  0.6
2015 Salami F, Qiao S, Homayouni R. Expression of mouse Dab2ip transcript variants and gene methylation during brain development Gene. 568: 19-24. DOI: 10.1016/j.gene.2015.05.012  0.6
2014 Niedermeyer SE, Penfound TA, Hohn C, Li Y, Homayouni R, Zhao J, Dale JB. Group A streptococcus expresses a trio of surface proteins containing protective epitopes. Clinical and Vaccine Immunology : Cvi. 21: 1421-5. PMID 25080552 DOI: 10.1128/CVI.00448-14  0.6
2014 Herr MJ, Longhurst CM, Baker B, Homayouni R, Speich HE, Kotha J, Jennings LK. Tetraspanin CD9 modulates human lymphoma cellular proliferation via histone deacetylase activity. Biochemical and Biophysical Research Communications. 447: 616-20. PMID 24747564 DOI: 10.1016/j.bbrc.2014.04.046  0.6
2014 Pandey AK, Lu L, Wang X, Homayouni R, Williams RW. Functionally enigmatic genes: a case study of the brain ignorome. Plos One. 9: e88889. PMID 24523945 DOI: 10.1371/journal.pone.0088889  0.6
2014 McKimm E, Corkill B, Goldowitz D, Albritton LM, Homayouni R, Blaha CD, Mittleman G. Glutamate dysfunction associated with developmental cerebellar damage: relevance to autism spectrum disorders. Cerebellum (London, England). 13: 346-53. PMID 24307139 DOI: 10.1007/s12311-013-0541-4  0.6
2013 Cashion A, Stanfill A, Thomas F, Xu L, Sutter T, Eason J, Ensell M, Homayouni R. Expression levels of obesity-related genes are associated with weight change in kidney transplant recipients. Plos One. 8: e59962. PMID 23544116 DOI: 10.1371/journal.pone.0059962  0.6
2013 Qiao S, Kim SH, Heck D, Goldowitz D, LeDoux MS, Homayouni R. Dab2IP GTPase activating protein regulates dendrite development and synapse number in cerebellum. Plos One. 8: e53635. PMID 23326475 DOI: 10.1371/journal.pone.0053635  0.6
2013 Ghoshal S, Jones L, Homayouni R. NIPSNAP1 deficient mice exhibit altered liver amino acid, lipid and nucleotide metabolism Metabolomics. 1-9. DOI: 10.1007/s11306-013-0583-0  0.6
2012 Xu L, Cheng C, George EO, Homayouni R. Literature aided determination of data quality and statistical significance threshold for gene expression studies. Bmc Genomics. 13: S23. PMID 23282414 DOI: 10.1186/1471-2164-13-S8-S23  0.6
2012 Lee GH, Kim SH, Homayouni R, D'Arcangelo G. Dab2ip regulates neuronal migration and neurite outgrowth in the developing neocortex. Plos One. 7: e46592. PMID 23056358 DOI: 10.1371/journal.pone.0046592  0.6
2012 Swanson JM, Wood GC, Xu L, Tang LE, Meibohm B, Homayouni R, Croce MA, Fabian TC. Developing a gene expression model for predicting ventilator-associated pneumonia in trauma patients: a pilot study. Plos One. 7: e42065. PMID 22916119 DOI: 10.1371/journal.pone.0042065  0.6
2011 Roy S, Heinrich K, Phan V, Berry MW, Homayouni R. Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets. Bmc Bioinformatics. 12: S19. PMID 22165960 DOI: 10.1186/1471-2105-12-S10-S19  0.6
2011 Rouchka EC, Flight RM, Homayouni R. Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011. Bmc Bioinformatics. 12: A1. PMID 21999392 DOI: 10.1186/1471-2105-12-S7-A1  0.6
2011 Lee S, Xu L, Shin Y, Gardner L, Hartzes A, Dohan FC, Raine C, Homayouni R, Levin MC. A potential link between autoimmunity and neurodegeneration in immune-mediated neurological disease. Journal of Neuroimmunology. 235: 56-69. PMID 21570130 DOI: 10.1016/j.jneuroim.2011.02.007  0.6
2011 Xu L, Furlotte N, Lin Y, Heinrich K, Berry MW, George EO, Homayouni R. Functional cohesion of gene sets determined by latent semantic indexing of PubMed abstracts. Plos One. 6: e18851. PMID 21533142 DOI: 10.1371/journal.pone.0018851  0.6
2011 Caudle KE, Barker KS, Wiederhold NP, Xu L, Homayouni R, Rogers PD. Genomewide expression profile analysis of the Candida glabrata Pdr1 regulon. Eukaryotic Cell. 10: 373-83. PMID 21193550 DOI: 10.1128/EC.00073-10  0.6
2011 Furlotte NA, Xu L, Williams RW, Homayouni R. Literature-based evaluation of microarray normalization procedures Proceedings - 2011 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2011. 608-612. DOI: 10.1109/BIBM.2011.114  0.6
2010 Tjioe E, Berry MW, Homayouni R. Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization). Bmc Bioinformatics. 11: S14. PMID 20946597 DOI: 10.1186/1471-2105-11-S6-S14  0.6
2010 Tummala H, Li X, Homayouni R. Interaction of a novel mitochondrial protein, 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (NIPSNAP1), with the amyloid precursor protein family. The European Journal of Neuroscience. 31: 1926-34. PMID 20497468 DOI: 10.1111/j.1460-9568.2010.07248.x  0.6
2009 Xu L, Homayouni R, Furlotte NA, Heinrich KE, George EO, Berry MW. Gene-set Cohesion Analysis Tool (GCAT): A literature based web tool for calculating functional cohesiveness of gene groups Proceedings - 2009 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2009. 349. DOI: 10.1109/BIBMW.2009.5332068  0.6
2008 Lu L, Wei L, Peirce JL, Wang X, Zhou J, Homayouni R, Williams RW, Airey DC. Using gene expression databases for classical trait QTL candidate gene discovery in the BXD recombinant inbred genetic reference population: mouse forebrain weight. Bmc Genomics. 9: 444. PMID 18817551 DOI: 10.1186/1471-2164-9-444  0.6
2008 Wei L, Fan M, Xu L, Heinrich K, Berry MW, Homayouni R, Pfeffer LM. Bioinformatic analysis reveals cRel as a regulator of a subset of interferon-stimulated genes. Journal of Interferon & Cytokine Research : the Official Journal of the International Society For Interferon and Cytokine Research. 28: 541-51. PMID 18715197 DOI: 10.1089/jir.2007.0136  0.6
2008 Barker KS, Park H, Phan QT, Xu L, Homayouni R, Rogers PD, Filler SG. Transcriptome profile of the vascular endothelial cell response to Candida albicans. The Journal of Infectious Diseases. 198: 193-202. PMID 18500935 DOI: 10.1086/589516  0.6
2008 Dunkel N, Liu TT, Barker KS, Homayouni R, Morschhäuser J, Rogers PD. A gain-of-function mutation in the transcription factor Upc2p causes upregulation of ergosterol biosynthesis genes and increased fluconazole resistance in a clinical Candida albicans isolate. Eukaryotic Cell. 7: 1180-90. PMID 18487346 DOI: 10.1128/EC.00103-08  0.6
2008 Heinrich KE, Berry MW, Homayouni R. Gene tree labeling using nonnegative matrix factorization on biomedical literature. Computational Intelligence and Neuroscience. 276535. PMID 18431447 DOI: 10.1155/2008/276535  0.6
2008 Tjioe E, Berry M, Homayouni R. Using a literature-based NMF model for discovering gene functional relationships Proceedings - 2008 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw. 185-192. DOI: 10.1109/BIBMW.2008.4686234  0.6
2007 Morschhäuser J, Barker KS, Liu TT, BlaB-Warmuth J, Homayouni R, Rogers PD. The transcription factor Mrr1p controls expression of the MDR1 efflux pump and mediates multidrug resistance in Candida albicans. Plos Pathogens. 3: e164. PMID 17983269 DOI: 10.1371/journal.ppat.0030164  0.6
2007 Liu TT, Znaidi S, Barker KS, Xu L, Homayouni R, Saidane S, Morschhäuser J, Nantel A, Raymond M, Rogers PD. Genome-wide expression and location analyses of the Candida albicans Tac1p regulon. Eukaryotic Cell. 6: 2122-38. PMID 17905926 DOI: 10.1128/EC.00327-07  0.6
2006 Driscoll CJ, Cashion AK, Hathaway DK, Thompson C, Conley Y, Riely C, Xu L, Homayouni R. Blood gene expression profiling in liver transplant recipients with hepatitis C virus and posttransplantation diabetes mellitus. Transplantation Proceedings. 38: 3646-8. PMID 17175356 DOI: 10.1016/j.transproceed.2006.10.116  0.6
2006 Bürklen TS, Schlattner U, Homayouni R, Gough K, Rak M, Szeghalmi A, Wallimann T. The creatine kinase/creatine connection to Alzheimer's disease: CK-inactivation, APP-CK complexes and focal creatine deposits. Journal of Biomedicine & Biotechnology. 2006: 35936. PMID 17047305 DOI: 10.1155/JBB/2006/35936  0.6
2006 LeDoux MS, Xu L, Xiao J, Ferrell B, Menkes DL, Homayouni R. Murine central and peripheral nervous system transcriptomes: comparative gene expression. Brain Research. 1107: 24-41. PMID 16824496 DOI: 10.1016/j.brainres.2006.05.101  0.6
2006 Smalheiser NR, Torvik VI, Bischoff-Grethe A, Burhans LB, Gabriel M, Homayouni R, Kashef A, Martone ME, Perkins GA, Price DL, Talk AC, West R. Collaborative development of the Arrowsmith two node search interface designed for laboratory investigators. Journal of Biomedical Discovery and Collaboration. 1: 8. PMID 16817965 DOI: 10.1186/1747-5333-1-8  0.6
2006 Vermitsky JP, Earhart KD, Smith WL, Homayouni R, Edlind TD, Rogers PD. Pdr1 regulates multidrug resistance in Candida glabrata: gene disruption and genome-wide expression studies. Molecular Microbiology. 61: 704-22. PMID 16803598 DOI: 10.1111/j.1365-2958.2006.05235.x  0.6
2006 Bao L, Wei L, Peirce JL, Homayouni R, Li H, Zhou M, Chen H, Lu L, Williams RW, Pfeffer LM, Goldowitz D, Cui Y. Combining gene expression QTL mapping and phenotypic spectrum analysis to uncover gene regulatory relationships. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 17: 575-83. PMID 16783639 DOI: 10.1007/s00335-005-0172-2  0.6
2006 Wei L, Sandbulte MR, Thomas PG, Webby RJ, Homayouni R, Pfeffer LM. NFkappaB negatively regulates interferon-induced gene expression and anti-influenza activity. The Journal of Biological Chemistry. 281: 11678-84. PMID 16517601 DOI: 10.1074/jbc.M513286200  0.6
2006 Li X, Bürklen T, Yuan X, Schlattner U, Desiderio DM, Wallimann T, Homayouni R. Stabilization of ubiquitous mitochondrial creatine kinase preprotein by APP family proteins. Molecular and Cellular Neurosciences. 31: 263-72. PMID 16260146 DOI: 10.1016/j.mcn.2005.09.015  0.6
2005 Liu TT, Lee RE, Barker KS, Lee RE, Wei L, Homayouni R, Rogers PD. Genome-wide expression profiling of the response to azole, polyene, echinocandin, and pyrimidine antifungal agents in Candida albicans. Antimicrobial Agents and Chemotherapy. 49: 2226-36. PMID 15917516 DOI: 10.1128/AAC.49.6.2226-2236.2005  0.6
2005 Homayouni R, Heinrich K, Wei L, Berry MW. Gene clustering by latent semantic indexing of MEDLINE abstracts. Bioinformatics (Oxford, England). 21: 104-15. PMID 15308538 DOI: 10.1093/bioinformatics/bth464  0.6
2004 Pfeffer LM, Kim JG, Pfeffer SR, Carrigan DJ, Baker DP, Wei L, Homayouni R. Role of nuclear factor-kappaB in the antiviral action of interferon and interferon-regulated gene expression. The Journal of Biological Chemistry. 279: 31304-11. PMID 15131130 DOI: 10.1074/jbc.M308975200  0.6
2003 Homayouni R, Magdaleno S, Keshvara L, Rice DS, Curran T. Interaction of Disabled-1 and the GTPase activating protein Dab2IP in mouse brain. Brain Research. Molecular Brain Research. 115: 121-9. PMID 12877983 DOI: 10.1016/S0169-328X(03)00176-1  0.6
2001 Homayouni R, Rice DS, Curran T. Disabled-1 interacts with a novel developmentally regulated protocadherin. Biochemical and Biophysical Research Communications. 289: 539-47. PMID 11716507 DOI: 10.1006/bbrc.2001.5998  0.6
2000 Homayouni R, Curran T. Cortical development: Cdk5 gets into sticky situations. Current Biology : Cb. 10: R331-4. PMID 10801432 DOI: 10.1016/S0960-9822(00)00459-0  0.6
1999 D'Arcangelo G, Homayouni R, Keshvara L, Rice DS, Sheldon M, Curran T. Reelin is a ligand for lipoprotein receptors. Neuron. 24: 471-9. PMID 10571240 DOI: 10.1016/S0896-6273(00)80860-0  0.6
1999 Homayouni R, Rice DS, Sheldon M, Curran T. Disabled-1 binds to the cytoplasmic domain of amyloid precursor-like protein 1. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 19: 7507-15. PMID 10460257  0.6
1998 Zwartjes RE, West H, Hattar S, Ren X, Noel F, Nuñez-Regueiro M, MacPhee K, Homayouni R, Crow MT, Byrne JH, Eskin A. Identification of specific mRNAs affected by treatments producing long-term facilitation in Aplysia. Learning & Memory (Cold Spring Harbor, N.Y.). 4: 478-95. PMID 10701873  0.6
1997 Homayouni R, Nunez-Regueiro M, Byrne JH, Eskin A. Identification of two phosphoproteins affected by serotonin in Aplysia sensory neurons. Brain Research. 750: 87-94. PMID 9098533 DOI: 10.1016/S0006-8993(96)01335-2  0.6
1996 Hardin SH, Jones LB, Homayouni R, McCollum JC. Octamer-primed cycle sequencing: design of an optimized primer library. Genome Research. 6: 545-50. PMID 8828043  0.6
1995 Homayouni R, Byrne JH, Eskin A. Dynamics of protein phosphorylation in sensory neurons of Aplysia. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 15: 429-38. PMID 7823147  0.6
1993 Byrne JH, Zwartjes R, Homayouni R, Critz SD, Eskin A. Roles of second messenger pathways in neuronal plasticity and in learning and memory. Insights gained from Aplysia. Advances in Second Messenger and Phosphoprotein Research. 27: 47-108. PMID 8418826  0.6
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