| Year |
Citation |
Score |
| 2019 |
Roy S, Zaman KI, Williams RW, Homayouni R. Evaluation of Sirtuin-3 probe quality and co-expressed genes using literature cohesion. Bmc Bioinformatics. 20: 104. PMID 30871457 DOI: 10.1186/s12859-019-2621-z |
0.384 |
|
| 2017 |
Han S, Zhang H, Homayouni R, Karmaus W. An efficient Bayesian approach for Gaussian Bayesian network structure learning. Communications in Statistics: Simulation and Computation. 46: 5070-5084. PMID 30918419 DOI: 10.1080/03610918.2016.1143103 |
0.351 |
|
| 2017 |
Roy S, Yun D, Madahian B, Berry MW, Deng LY, Goldowitz D, Homayouni R. Navigating the Functional Landscape of Transcription Factors via Non-Negative Tensor Factorization Analysis of MEDLINE Abstracts. Frontiers in Bioengineering and Biotechnology. 5: 48. PMID 28894735 DOI: 10.3389/Fbioe.2017.00048 |
0.539 |
|
| 2015 |
Madahian B, Roy S, Bowman D, Deng LY, Homayouni R. A Bayesian approach for inducing sparsity in generalized linear models with multi-category response. Bmc Bioinformatics. 16: S13. PMID 26423345 DOI: 10.1186/1471-2105-16-S13-S13 |
0.558 |
|
| 2015 |
Salami F, Qiao S, Homayouni R. Expression of mouse Dab2ip transcript variants and gene methylation during brain development. Gene. 568: 19-24. PMID 25958345 DOI: 10.1016/j.gene.2015.05.012 |
0.379 |
|
| 2015 |
Ha T, Swanson D, Larouche M, Glenn R, Weeden D, Zhang P, Hamre K, Langston M, Phillips C, Song M, Ouyang Z, Chesler E, Duvvurru S, Yordanova R, Cui Y, ... ... Homayouni R, et al. CbGRiTS: cerebellar gene regulation in time and space. Developmental Biology. 397: 18-30. PMID 25446528 DOI: 10.1016/J.Ydbio.2014.09.032 |
0.404 |
|
| 2014 |
Pandey AK, Lu L, Wang X, Homayouni R, Williams RW. Functionally enigmatic genes: a case study of the brain ignorome. Plos One. 9: e88889. PMID 24523945 DOI: 10.1371/Journal.Pone.0088889 |
0.432 |
|
| 2014 |
Madahian B, Deng LY, Homayouni R. Application of Sparse Bayesian Generalized Linear Model to Gene Expression Data for Classification of Prostate Cancer Subtypes Open Journal of Statistics. 4: 518-526. DOI: 10.4236/OJS.2014.47049 |
0.364 |
|
| 2014 |
Madahian B, Deng LY, Homayouni R. Development of sparse Bayesian multinomial generalized linear model for multi-class prediction Bmc Bioinformatics. 15: P14. DOI: 10.1186/1471-2105-15-S10-P14 |
0.358 |
|
| 2014 |
Lee S, Madahian B, Sutter C, Dickens C, Russo I, Russo J, Homayouni R, Sutter T. Abstract 451: A novel algorithm for prioritizing candidate genes driving malignant transformation of MCF10F cells and basal-like breast cancer Cancer Research. 74: 451-451. DOI: 10.1158/1538-7445.Am2014-451 |
0.347 |
|
| 2013 |
Cashion A, Stanfill A, Thomas F, Xu L, Sutter T, Eason J, Ensell M, Homayouni R. Expression levels of obesity-related genes are associated with weight change in kidney transplant recipients. Plos One. 8: e59962. PMID 23544116 DOI: 10.1371/Journal.Pone.0059962 |
0.366 |
|
| 2013 |
Qiao S, Kim SH, Heck D, Goldowitz D, LeDoux MS, Homayouni R. Dab2IP GTPase activating protein regulates dendrite development and synapse number in cerebellum. Plos One. 8: e53635. PMID 23326475 DOI: 10.1371/Journal.Pone.0053635 |
0.31 |
|
| 2012 |
Xu L, Cheng C, George EO, Homayouni R. Literature aided determination of data quality and statistical significance threshold for gene expression studies. Bmc Genomics. 13: S23. PMID 23282414 DOI: 10.1186/1471-2164-13-S8-S23 |
0.404 |
|
| 2012 |
Lee GH, Kim SH, Homayouni R, D'Arcangelo G. Dab2ip regulates neuronal migration and neurite outgrowth in the developing neocortex. Plos One. 7: e46592. PMID 23056358 DOI: 10.1371/Journal.Pone.0046592 |
0.31 |
|
| 2012 |
Swanson JM, Wood GC, Xu L, Tang LE, Meibohm B, Homayouni R, Croce MA, Fabian TC. Developing a gene expression model for predicting ventilator-associated pneumonia in trauma patients: a pilot study. Plos One. 7: e42065. PMID 22916119 DOI: 10.1371/Journal.Pone.0042065 |
0.37 |
|
| 2011 |
Roy S, Heinrich K, Phan V, Berry MW, Homayouni R. Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets. Bmc Bioinformatics. 12: S19. PMID 22165960 DOI: 10.1186/1471-2105-12-S10-S19 |
0.443 |
|
| 2011 |
Xu L, Furlotte N, Lin Y, Heinrich K, Berry MW, George EO, Homayouni R. Functional cohesion of gene sets determined by latent semantic indexing of PubMed abstracts. Plos One. 6: e18851. PMID 21533142 DOI: 10.1371/Journal.Pone.0018851 |
0.424 |
|
| 2011 |
Caudle KE, Barker KS, Wiederhold NP, Xu L, Homayouni R, Rogers PD. Genomewide expression profile analysis of the Candida glabrata Pdr1 regulon. Eukaryotic Cell. 10: 373-83. PMID 21193550 DOI: 10.1128/Ec.00073-10 |
0.403 |
|
| 2010 |
Tjioe E, Berry MW, Homayouni R. Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization). Bmc Bioinformatics. 11: S14. PMID 20946597 DOI: 10.1186/1471-2105-11-S6-S14 |
0.404 |
|
| 2010 |
Tummala H, Li X, Homayouni R. Interaction of a novel mitochondrial protein, 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (NIPSNAP1), with the amyloid precursor protein family. The European Journal of Neuroscience. 31: 1926-34. PMID 20497468 DOI: 10.1111/j.1460-9568.2010.07248.x |
0.509 |
|
| 2009 |
Roy S, Xu L, Homayouni R. LSI based framework to predict gene regulatory information Bmc Bioinformatics. 10: A5. DOI: 10.1186/1471-2105-10-S7-A5 |
0.333 |
|
| 2008 |
Lu L, Wei L, Peirce JL, Wang X, Zhou J, Homayouni R, Williams RW, Airey DC. Using gene expression databases for classical trait QTL candidate gene discovery in the BXD recombinant inbred genetic reference population: mouse forebrain weight. Bmc Genomics. 9: 444. PMID 18817551 DOI: 10.1186/1471-2164-9-444 |
0.472 |
|
| 2008 |
Wei L, Fan M, Xu L, Heinrich K, Berry MW, Homayouni R, Pfeffer LM. Bioinformatic analysis reveals cRel as a regulator of a subset of interferon-stimulated genes. Journal of Interferon & Cytokine Research : the Official Journal of the International Society For Interferon and Cytokine Research. 28: 541-51. PMID 18715197 DOI: 10.1089/Jir.2007.0136 |
0.497 |
|
| 2008 |
Dunkel N, Liu TT, Barker KS, Homayouni R, Morschhäuser J, Rogers PD. A gain-of-function mutation in the transcription factor Upc2p causes upregulation of ergosterol biosynthesis genes and increased fluconazole resistance in a clinical Candida albicans isolate. Eukaryotic Cell. 7: 1180-90. PMID 18487346 DOI: 10.1128/EC.00103-08 |
0.35 |
|
| 2008 |
Heinrich KE, Berry MW, Homayouni R. Gene tree labeling using nonnegative matrix factorization on biomedical literature. Computational Intelligence and Neuroscience. 276535. PMID 18431447 DOI: 10.1155/2008/276535 |
0.307 |
|
| 2008 |
Tjioe E, Berry M, Homayouni R. Using a literature-based NMF model for discovering gene functional relationships Proceedings - 2008 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw. 185-192. DOI: 10.1109/BIBMW.2008.4686234 |
0.359 |
|
| 2007 |
Liu TT, Znaidi S, Barker KS, Xu L, Homayouni R, Saidane S, Morschhäuser J, Nantel A, Raymond M, Rogers PD. Genome-wide expression and location analyses of the Candida albicans Tac1p regulon. Eukaryotic Cell. 6: 2122-38. PMID 17905926 DOI: 10.1128/Ec.00327-07 |
0.422 |
|
| 2006 |
LeDoux MS, Xu L, Xiao J, Ferrell B, Menkes DL, Homayouni R. Murine central and peripheral nervous system transcriptomes: comparative gene expression. Brain Research. 1107: 24-41. PMID 16824496 DOI: 10.1016/J.Brainres.2006.05.101 |
0.384 |
|
| 2006 |
Vermitsky JP, Earhart KD, Smith WL, Homayouni R, Edlind TD, Rogers PD. Pdr1 regulates multidrug resistance in Candida glabrata: gene disruption and genome-wide expression studies. Molecular Microbiology. 61: 704-22. PMID 16803598 DOI: 10.1111/J.1365-2958.2006.05235.X |
0.343 |
|
| 2006 |
Bao L, Wei L, Peirce JL, Homayouni R, Li H, Zhou M, Chen H, Lu L, Williams RW, Pfeffer LM, Goldowitz D, Cui Y. Combining gene expression QTL mapping and phenotypic spectrum analysis to uncover gene regulatory relationships. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 17: 575-83. PMID 16783639 DOI: 10.1007/S00335-005-0172-2 |
0.494 |
|
| 2006 |
Wei L, Sandbulte MR, Thomas PG, Webby RJ, Homayouni R, Pfeffer LM. NFkappaB negatively regulates interferon-induced gene expression and anti-influenza activity. The Journal of Biological Chemistry. 281: 11678-84. PMID 16517601 DOI: 10.1074/Jbc.M513286200 |
0.467 |
|
| 2006 |
Li X, Bürklen T, Yuan X, Schlattner U, Desiderio DM, Wallimann T, Homayouni R. Stabilization of ubiquitous mitochondrial creatine kinase preprotein by APP family proteins. Molecular and Cellular Neurosciences. 31: 263-72. PMID 16260146 DOI: 10.1016/J.Mcn.2005.09.015 |
0.509 |
|
| 2006 |
Cashion A, Driscoll C, Conley Y, Xu L, Mandrell B, Homayouni R. Pilot Study Examining the Utility of Microarray Data to Identify Genes Associated with Weight in Transplant Recipients Nursing and Health Sciences. 8: 125-125. DOI: 10.1111/J.1442-2018.2006.00272_3.X |
0.384 |
|
| 2005 |
Liu TT, Lee RE, Barker KS, Lee RE, Wei L, Homayouni R, Rogers PD. Genome-wide expression profiling of the response to azole, polyene, echinocandin, and pyrimidine antifungal agents in Candida albicans. Antimicrobial Agents and Chemotherapy. 49: 2226-36. PMID 15917516 DOI: 10.1128/Aac.49.6.2226-2236.2005 |
0.482 |
|
| 2005 |
Homayouni R, Heinrich K, Wei L, Berry MW. Gene clustering by latent semantic indexing of MEDLINE abstracts. Bioinformatics (Oxford, England). 21: 104-15. PMID 15308538 DOI: 10.1093/Bioinformatics/Bth464 |
0.497 |
|
| 2004 |
Pfeffer LM, Kim JG, Pfeffer SR, Carrigan DJ, Baker DP, Wei L, Homayouni R. Role of nuclear factor-kappaB in the antiviral action of interferon and interferon-regulated gene expression. The Journal of Biological Chemistry. 279: 31304-11. PMID 15131130 DOI: 10.1074/jbc.M308975200 |
0.44 |
|
| 2003 |
Homayouni R, Magdaleno S, Keshvara L, Rice DS, Curran T. Interaction of Disabled-1 and the GTPase activating protein Dab2IP in mouse brain. Brain Research. Molecular Brain Research. 115: 121-9. PMID 12877983 DOI: 10.1016/S0169-328X(03)00176-1 |
0.305 |
|
| 2001 |
Homayouni R, Rice DS, Curran T. Disabled-1 interacts with a novel developmentally regulated protocadherin. Biochemical and Biophysical Research Communications. 289: 539-47. PMID 11716507 DOI: 10.1006/Bbrc.2001.5998 |
0.332 |
|
| 1999 |
Homayouni R, Rice DS, Sheldon M, Curran T. Disabled-1 binds to the cytoplasmic domain of amyloid precursor-like protein 1. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 19: 7507-15. PMID 10460257 DOI: 10.1523/Jneurosci.19-17-07507.1999 |
0.311 |
|
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