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Michael Q. Zhang - Publications

Affiliations: 
Computational Biology and Bioinformatics Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
 Director of the Center for Systems Biology University of Texas at Dallas, Richardson, TX, United States 
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Year Citation  Score
2020 Yan P, Lu JY, Niu J, Gao J, Zhang MQ, Yin Y, Shen X. LncRNA Platr22 promotes super-enhancer activity and stem cell pluripotency. Journal of Molecular Cell Biology. PMID 33049031 DOI: 10.1093/jmcb/mjaa056  0.316
2020 Chen Y, Wang Y, Liu X, Xu J, Zhang MQ. Model-based analysis of chromatin interactions from dCas9-Based CAPTURE-3C-seq. Plos One. 15: e0236666. PMID 32735574 DOI: 10.1371/Journal.Pone.0236666  0.409
2020 Kong R, Xu X, Liu X, He P, Zhang MQ, Dai Q. 2SigFinder: the combined use of small-scale and large-scale statistical testing for genomic island detection from a single genome. Bmc Bioinformatics. 21: 159. PMID 32349677 DOI: 10.1186/S12859-020-3501-2  0.328
2020 Ramanand SG, Chen Y, Yuan J, Daescu K, Lambros M, Houlahan KE, Carreira S, Yuan W, Baek G, Sharp A, Paschalis A, Kanchwala M, Gao Y, Aslam A, Safdar N, ... ... Zhang MQ, et al. The landscape of RNA polymerase II associated chromatin interactions in prostate cancer. The Journal of Clinical Investigation. PMID 32343676 DOI: 10.1172/Jci134260  0.394
2020 Xiong Q, Huang S, Li YH, Lv N, Lv C, Ding Y, Liu WW, Wang LL, Chen Y, Sun L, Zhao Y, Liao SY, Zhang MQ, Zhu BL, Yu L. Single‑cell RNA sequencing of t(8;21) acute myeloid leukemia for risk prediction. Oncology Reports. PMID 32323795 DOI: 10.3892/Or.2020.7507  0.34
2020 Liu X, Chen Y, Zhang Y, Liu Y, Liu N, Botten GA, Cao H, Orkin SH, Zhang MQ, Xu J. Multiplexed capture of spatial configuration and temporal dynamics of locus-specific 3D chromatin by biotinylated dCas9. Genome Biology. 21: 59. PMID 32138752 DOI: 10.1186/S13059-020-01973-W  0.411
2019 Jia C, Wang LY, Yin GG, Zhang MQ. Single-cell stochastic gene expression kinetics with coupled positive-plus-negative feedback. Physical Review. E. 100: 052406. PMID 31869986 DOI: 10.1103/Physreve.100.052406  0.321
2019 An Z, Liu P, Zheng J, Si C, Li T, Chen Y, Ma T, Zhang MQ, Zhou Q, Ding S. Sox2 and Klf4 as the Functional Core in Pluripotency Induction without Exogenous Oct4. Cell Reports. 29: 1986-2000.e8. PMID 31722212 DOI: 10.1016/J.Celrep.2019.10.026  0.337
2019 Xiong L, Xu K, Tian K, Shao Y, Tang L, Gao G, Zhang M, Jiang T, Zhang QC. SCALE method for single-cell ATAC-seq analysis via latent feature extraction. Nature Communications. 10: 4576. PMID 31594952 DOI: 10.1038/S41467-019-12630-7  0.311
2019 Xiao R, Chen JY, Liang Z, Luo D, Chen G, Lu ZJ, Chen Y, Zhou B, Li H, Du X, Yang Y, San M, Wei X, Liu W, Lécuyer E, ... ... Zhang MQ, et al. Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription. Cell. 178: 107-121.e18. PMID 31251911 DOI: 10.1016/J.Cell.2019.06.001  0.402
2018 Kim YJ, Xie P, Cao L, Zhang MQ, Kim TH. Global transcriptional activity dynamics reveal functional enhancer RNAs. Genome Research. PMID 30352805 DOI: 10.1101/Gr.233486.117  0.394
2018 Chen F, Li G, Zhang MQ, Chen Y. HiCDB: a sensitive and robust method for detecting contact domain boundaries. Nucleic Acids Research. PMID 30184171 DOI: 10.1093/Nar/Gky789  0.342
2018 Liu X, Zhang Y, Chen Y, Li M, Shao Z, Zhang MQ, Xu J. CAPTURE: In Situ Analysis of Chromatin Composition of Endogenous Genomic Loci by Biotinylated dCas9. Current Protocols in Molecular Biology. e64. PMID 29927077 DOI: 10.1002/cpmb.64  0.322
2018 Tan Z, Niu B, Tsang KY, Melhado IG, Ohba S, He X, Huang Y, Wang C, McMahon AP, Jauch R, Chan D, Zhang MQ, Cheah KSE. Synergistic co-regulation and competition by a SOX9-GLI-FOXA phasic transcriptional network coordinate chondrocyte differentiation transitions. Plos Genetics. 14: e1007346. PMID 29659575 DOI: 10.1371/Journal.Pgen.1007346  0.394
2018 Ma T, Chen L, Shi M, Niu J, Zhang X, Yang X, Zhanghao K, Wang M, Xi P, Jin D, Zhang M, Gao J. Developing novel methods to image and visualize 3D genomes. Cell Biology and Toxicology. PMID 29577183 DOI: 10.1007/S10565-018-9427-Z  0.335
2018 Ray P, Torck A, Quigley L, Wangzhou A, Neiman M, Rao C, Lam T, Kim JY, Kim TH, Zhang MQ, Dussor G, Price TJ. Title: Comparative transcriptome profiling of the human and mouse dorsal root ganglia: an RNA-seq-based resource for pain and sensory neuroscience research. Pain. PMID 29561359 DOI: 10.1097/J.Pain.0000000000001217  0.374
2018 Djekidel MN, Chen Y, Zhang MQ. FIND: difFerential chromatin INteractions Detection using a spatial Poisson process. Genome Research. PMID 29440282 DOI: 10.1101/Gr.212241.116  0.726
2018 Li Y, He Y, Liang Z, Wang Y, Chen F, Djekidel MN, Li G, Zhang X, Xiang S, Wang Z, Gao J, Zhang MQ, Chen Y. Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation. Cell Death & Disease. 9: 200. PMID 29422670 DOI: 10.1038/S41419-017-0173-6  0.765
2018 Jia C, Qian H, Chen M, Zhang MQ. Relaxation rates of gene expression kinetics reveal the feedback signs of autoregulatory gene networks The Journal of Chemical Physics. 148: 095102. DOI: 10.1063/1.5009749  0.316
2017 Jia C, Zhang MQ, Qian H. Emergent Lévy behavior in single-cell stochastic gene expression. Physical Review. E. 96: 040402. PMID 29347590 DOI: 10.1103/Physreve.96.040402  0.305
2017 Jia C, Xie P, Chen M, Zhang MQ. Stochastic fluctuations can reveal the feedback signs of gene regulatory networks at the single-molecule level. Scientific Reports. 7: 16037. PMID 29167445 DOI: 10.1038/S41598-017-15464-9  0.352
2017 Liang Z, Li G, Wang Z, Djekidel MN, Li Y, Qian MP, Zhang MQ, Chen Y. BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions. Nature Communications. 8: 1622. PMID 29158486 DOI: 10.1038/S41467-017-01754-3  0.764
2017 Fang S, Zhang L, Guo J, Niu Y, Wu Y, Li H, Zhao L, Li X, Teng X, Sun X, Sun L, Zhang MQ, Chen R, Zhao Y. NONCODEV5: a comprehensive annotation database for long non-coding RNAs. Nucleic Acids Research. PMID 29140524 DOI: 10.1093/Nar/Gkx1107  0.324
2017 Li X, Chen W, Chen Y, Zhang X, Gu J, Zhang MQ. Network embedding-based representation learning for single cell RNA-seq data. Nucleic Acids Research. PMID 28977434 DOI: 10.1093/Nar/Gkx750  0.323
2017 Guo W, Zhu P, Pellegrini M, Zhang M, Wang X, Ni Z. CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data. Bioinformatics (Oxford, England). PMID 28968643 DOI: 10.1093/Bioinformatics/Btx595  0.356
2017 Chen FX, Xie P, Collings CK, Cao K, Aoi Y, Marshall SA, Rendleman EJ, Ugarenko M, Ozark PA, Zhang A, Shiekhattar R, Smith ER, Zhang MQ, Shilatifard A. PAF1 regulation of promoter-proximal pause release via enhancer activation. Science (New York, N.Y.). PMID 28860207 DOI: 10.1126/Science.Aan3269  0.313
2017 Liu X, Zhang Y, Chen Y, Li M, Zhou F, Li K, Cao H, Ni M, Liu Y, Gu Z, Dickerson KE, Xie S, Hon GC, Xuan Z, Zhang MQ, et al. In Situ Capture of Chromatin Interactions by Biotinylated dCas9. Cell. 170: 1028-1043.e19. PMID 28841410 DOI: 10.1016/J.Cell.2017.08.003  0.689
2017 Du Z, Zheng H, Huang B, Ma R, Wu J, Zhang X, He J, Xiang Y, Wang Q, Li Y, Ma J, Zhang X, Zhang K, Wang Y, Zhang MQ, et al. Allelic reprogramming of 3D chromatin architecture during early mammalian development. Nature. 547: 232-235. PMID 28703188 DOI: 10.1038/Nature23263  0.339
2017 Liu Z, Lou H, Xie K, Wang H, Chen N, Aparicio OM, Zhang MQ, Jiang R, Chen T. Reconstructing cell cycle pseudo time-series via single-cell transcriptome data. Nature Communications. 8: 22. PMID 28630425 DOI: 10.1038/S41467-017-00039-Z  0.31
2017 Li Y, Ning Q, Shi J, Chen Y, Jiang M, Gao L, Huang W, Jing Y, Huang S, Liu A, Hu Z, Liu D, Wang L, Nervi C, Dai Y, ... Zhang MQ, et al. A novel epigenetic AML1-ETO/THAP10/miR-383 mini-circuitry contributes to t(8;21) leukaemogenesis. Embo Molecular Medicine. PMID 28539478 DOI: 10.15252/Emmm.201607180  0.323
2017 Dong Q, Han H, Liu X, Wei L, Zhang W, Zhao Z, Zhang MQ, Wang X. HCSGD: An integrated database of human cellular senescence genes. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 28529078 DOI: 10.1016/J.Jgg.2017.04.001  0.359
2017 Pavlovic M, Ray P, Pavlovic K, Kotamarti A, Chen M, Zhang MQ. DIRECTION: A machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes. Bioinformatics (Oxford, England). PMID 28505334 DOI: 10.1093/Bioinformatics/Btx316  0.377
2017 Ni Y, Cao B, Ma T, Niu G, Huo Y, Huang J, Chen D, Liu Y, Yu B, Zhang MQ, Niu H. Super-resolution imaging of a 2.5 kb non-repetitive DNA in situ in the nuclear genome using molecular beacon probes. Elife. 6. PMID 28485713 DOI: 10.7554/Elife.21660  0.338
2016 Srivastava S, Potla S, Torck A, Zhang M, Dussor G, Ray P, Price T. (278) A potential role for eIF4A in regulation of nociceptor plasticity: a motif-based genome-wide search for eIF4A targets. The Journal of Pain : Official Journal of the American Pain Society. 17: S45. PMID 28162511 DOI: 10.1016/J.Jpain.2016.01.184  0.345
2016 Dai Q, Bao C, Hai Y, Ma S, Zhou T, Wang C, Wang Y, Huo W, Liu X, Yao Y, Xuan Z, Chen M, Zhang MQ. MTGIpick allows robust identification of genomic islands from a single genome. Briefings in Bioinformatics. PMID 28025178 DOI: 10.1093/Bib/Bbw118  0.646
2016 Guo W, Zhang MQ, Wu H. Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon elements. Scientific Reports. 6: 32207. PMID 27573482 DOI: 10.1038/Srep32207  0.363
2016 Ma X, Zhan G, Sleumer MC, Chen S, Liu W, Zhang MQ, Liu X. Analysis of C. elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT). Nucleic Acids Research. PMID 27557708 DOI: 10.1093/Nar/Gkw734  0.344
2016 Chen Y, Wang Y, Xuan Z, Chen M, Zhang MQ. De novo deciphering three-dimensional chromatin interaction and topological domains by wavelet transformation of epigenetic profiles. Nucleic Acids Research. PMID 27060148 DOI: 10.1093/Nar/Gkw225  0.653
2016 Sathe A, Chen Y, Yoo H, Zhang MQ. Abstract 773: Analysis of oncogene affected networks in tumorigenesis of lung cancer Cancer Research. 76: 773-773. DOI: 10.1158/1538-7445.Am2016-773  0.317
2016 Djekidel MN, Wang M, Zhang MQ, Gao J. HiC-3DViewer: a new tool to visualize Hi-C data in 3D space Quantitative Biology. 5: 183-190. DOI: 10.1007/s40484-017-0091-8  0.683
2016 Gao J, Yang X, Djekidel MN, Wang Y, Xi P, Zhang MQ. Developing bioimaging and quantitative methods to study 3D genome Quantitative Biology. 4: 129-147. DOI: 10.1007/s40484-016-0065-2  0.713
2015 Sathe A, Zhang YA, Ma X, Ray P, Cadinu D, Wang YW, Yao X, Liu X, Tang H, Wang Y, Huang Y, Liu C, Gu J, Akerman M, Mo Y, ... ... Zhang MQ, et al. SCT Promoter Methylation is a Highly Discriminative Biomarker for Lung and Many Other Cancers. Ieee Life Sciences Letters. 1: 30-33. PMID 33758771 DOI: 10.1109/lls.2015.2488438  0.582
2015 Zhang YA, Ma X, Sathe A, Fujimoto J, Wistuba II, Lam S, Yatabe Y, Wang YW, Stastny V, Gao B, Larsen JE, Girard L, Liu X, Song K, Behrens C, ... ... Zhang MQ, et al. Validation of SCT Methylation As a Hallmark Biomarker for Lung Cancers. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. PMID 26725182 DOI: 10.1016/J.Jtho.2015.11.004  0.309
2015 Djekidel MN, Liang Z, Wang Q, Hu Z, Li G, Chen Y, Zhang MQ. 3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process. Genome Biology. 16: 288. PMID 26694485 DOI: 10.1186/S13059-015-0851-6  0.746
2015 Zhao Y, Li H, Fang S, Kang Y, Wu W, Hao Y, Li Z, Bu D, Sun N, Zhang MQ, Chen R. NONCODE 2016: an informative and valuable data source of long non-coding RNAs. Nucleic Acids Research. PMID 26586799 DOI: 10.1093/Nar/Gkv1252  0.311
2015 Greer CB, Tanaka Y, Kim YJ, Xie P, Zhang MQ, Park IH, Kim TH. Histone Deacetylases Positively Regulate Transcription through the Elongation Machinery. Cell Reports. PMID 26549458 DOI: 10.1016/J.Celrep.2015.10.013  0.417
2015 Guo Y, Xu Q, Canzio D, Shou J, Li J, Gorkin DU, Jung I, Wu H, Zhai Y, Tang Y, Lu Y, Wu Y, Jia Z, Li W, Zhang MQ, et al. CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function. Cell. 162: 900-10. PMID 26276636 DOI: 10.1016/J.Cell.2015.07.038  0.427
2015 Akerman M, Fregoso OI, Das S, Ruse C, Jensen MA, Pappin DJ, Zhang MQ, Krainer AR. Differential connectivity of splicing activators and repressors to the human spliceosome. Genome Biology. 16: 119. PMID 26047612 DOI: 10.1186/S13059-015-0682-5  0.343
2015 Orozco LD, Morselli M, Rubbi L, Guo W, Go J, Shi H, Lopez D, Furlotte NA, Bennett BJ, Farber CR, Ghazalpour A, Zhang MQ, Bahous R, Rozen R, Lusis AJ, et al. Epigenome-wide association of liver methylation patterns and complex metabolic traits in mice. Cell Metabolism. 21: 905-17. PMID 26039453 DOI: 10.1016/J.Cmet.2015.04.025  0.336
2015 Wang T, Xiao G, Chu Y, Zhang MQ, Corey DR, Xie Y. Design and bioinformatics analysis of genome-wide CLIP experiments. Nucleic Acids Research. 43: 5263-74. PMID 25958398 DOI: 10.1093/Nar/Gkv439  0.376
2015 Wang P, Qin J, Qin Y, Zhu Y, Wang LY, Li MJ, Zhang MQ, Wang J. ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks. Nucleic Acids Research. 43: W264-9. PMID 25916854 DOI: 10.7490/F1000Research.1110240.1  0.408
2015 Huo W, Adams HM, Zhang MQ, Palmer KL. Genome Modification in Enterococcus faecalis OG1RF Assessed by Bisulfite Sequencing and Single-Molecule Real-Time Sequencing. Journal of Bacteriology. 197: 1939-51. PMID 25825433 DOI: 10.1128/Jb.00130-15  0.335
2015 Leung D, Jung I, Rajagopal N, Schmitt A, Selvaraj S, Lee AY, Yen CA, Lin S, Lin Y, Qiu Y, Xie W, Yue F, Hariharan M, Ray P, Kuan S, ... ... Zhang MQ, et al. Integrative analysis of haplotype-resolved epigenomes across human tissues. Nature. 518: 350-4. PMID 25693566 DOI: 10.1038/Nature14217  0.379
2015 Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Zhang MQ, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/Nature14248  0.378
2015 Hu L, Di C, Kai M, Yang YC, Li Y, Qiu Y, Hu X, Yip KY, Zhang MQ, Lu ZJ. A common set of distinct features that characterize noncoding RNAs across multiple species. Nucleic Acids Research. 43: 104-14. PMID 25505163 DOI: 10.1093/Nar/Gku1316  0.337
2015 Sathe A, Zhang Y, Ma X, Ray P, Cadinu D, Wang Y, Yao X, Liu X, Tang H, Wang Y, Huang Y, Liu C, Gu J, Akerman M, Mo Y, ... ... Zhang MQ, et al. SCT Promoter Methylation Is a Highly Discriminative Biomarker for Lung and Many Other Cancers Ieee Life Sciences Letters. 1: 30-33. DOI: 10.1109/LLS.2015.2488438  0.561
2014 Liao W, Ouyang W, Zhang MQ, Li MO. Genome Wide Mapping of Foxo1 Binding-sites in Murine T Lymphocytes. Genomics Data. 2: 280-281. PMID 25302145 DOI: 10.1016/J.Gdata.2014.08.006  0.357
2014 Gu J, Chen Y, Huang H, Yin L, Xie Z, Zhang MQ. Gene module based regulator inference identifying miR-139 as a tumor suppressor in colorectal cancer. Molecular Biosystems. 10: 3249-54. PMID 25286864 DOI: 10.1039/C4Mb00329B  0.305
2014 Lu Y, Zhou X, Jin Z, Cheng J, Shen W, Ji F, Liu L, Zhang X, Zhang M, Cao Y, Han D, Choy K, Yuan H. Resolving the genetic heterogeneity of prelingual hearing loss within one family: Performance comparison and application of two targeted next generation sequencing approaches. Journal of Human Genetics. 59: 599-607. PMID 25231367 DOI: 10.1038/Jhg.2014.78  0.322
2014 Heidari N, Phanstiel DH, He C, Grubert F, Jahanbani F, Kasowski M, Zhang MQ, Snyder MP. Genome-wide map of regulatory interactions in the human genome. Genome Research. 24: 1905-17. PMID 25228660 DOI: 10.1101/Gr.176586.114  0.451
2014 Cheng J, Zhou X, Lu Y, Chen J, Han B, Zhu Y, Liu L, Choy KW, Han D, Sham PC, Zhang MQ, Zhang X, Yuan H. Exome Sequencing Identifies a Novel Frameshift Mutation of MYO6 as the Cause of Autosomal Dominant Nonsyndromic Hearing Loss in a Chinese Family. Annals of Human Genetics. PMID 25227905 DOI: 10.1111/Ahg.12084  0.309
2014 Rajagopal N, Ernst J, Ray P, Wu J, Zhang M, Kellis M, Ren B. Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies. G3 (Bethesda, Md.). 4: 2051-63. PMID 25122670 DOI: 10.1534/G3.114.013565  0.377
2014 Li W, Wu J, Kim SY, Zhao M, Hearn SA, Zhang MQ, Meistrich ML, Mills AA. Chd5 orchestrates chromatin remodelling during sperm development. Nature Communications. 5: 3812. PMID 24818823 DOI: 10.1038/Ncomms4812  0.327
2014 Li Y, Ehrhardt K, Zhang MQ, Bleris L. Assembly and validation of versatile transcription activator-like effector libraries. Scientific Reports. 4: 4857. PMID 24798576 DOI: 10.1038/Srep04857  0.387
2014 He C, Wang X, Zhang MQ. Nucleosome eviction and multiple co-factor binding predict estrogen-receptor-alpha-associated long-range interactions. Nucleic Acids Research. 42: 6935-44. PMID 24782518 DOI: 10.1093/Nar/Gku327  0.388
2014 Weyn-Vanhentenryck SM, Mele A, Yan Q, Sun S, Farny N, Zhang Z, Xue C, Herre M, Silver PA, Zhang MQ, Krainer AR, Darnell RB, Zhang C. HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism. Cell Reports. 6: 1139-52. PMID 24613350 DOI: 10.1016/J.Celrep.2014.02.005  0.335
2014 Guo W, Chung WY, Qian M, Pellegrini M, Zhang MQ. Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells. Nucleic Acids Research. 42: 3009-16. PMID 24343027 DOI: 10.1093/Nar/Gkt1306  0.357
2013 Guo W, Fiziev P, Yan W, Cokus S, Sun X, Zhang MQ, Chen PY, Pellegrini M. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data. Bmc Genomics. 14: 774. PMID 24206606 DOI: 10.1186/1471-2164-14-774  0.352
2013 Wu D, Gu J, Zhang MQ. FastDMA: an infinium humanmethylation450 beadchip analyzer. Plos One. 8: e74275. PMID 24040221 DOI: 10.1371/Journal.Pone.0074275  0.373
2013 Rajaram M, Zhang J, Wang T, Li J, Kuscu C, Qi H, Kato M, Grubor V, Weil RJ, Helland A, Borrenson-Dale AL, Cho KR, Levine DA, Houghton AN, Wolchok JD, ... ... Zhang M, et al. Two Distinct Categories of Focal Deletions in Cancer Genomes. Plos One. 8: e66264. PMID 23805207 DOI: 10.1371/Journal.Pone.0066264  0.347
2013 Ma X, Wang YW, Zhang MQ, Gazdar AF. DNA methylation data analysis and its application to cancer research. Epigenomics. 5: 301-16. PMID 23750645 DOI: 10.2217/Epi.13.26  0.349
2013 Wang C, Zhang MQ, Zhang Z. Computational identification of active enhancers in model organisms. Genomics, Proteomics & Bioinformatics. 11: 142-50. PMID 23685394 DOI: 10.1016/J.Gpb.2013.04.002  0.412
2013 Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, ... ... Zhang MQ, et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell. 153: 1134-48. PMID 23664764 DOI: 10.1016/J.Cell.2013.04.022  0.656
2013 Wu J, Anczuków O, Krainer AR, Zhang MQ, Zhang C. OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds. Nucleic Acids Research. 41: 5149-63. PMID 23571760 DOI: 10.1093/Nar/Gkt216  0.334
2013 Chung W, Schmitz RJ, Biorac T, Ye D, Dudas M, Meredith GD, Adams CC, Ecker JR, Zhang MQ. Constructing Hepitypes: Phasing Local Genotype and DNA Methylation Journal of Neuroscience and Neuroengineering. 2: 335-346. DOI: 10.1166/Jnsne.2013.1067  0.379
2012 Tang MH, Varadan V, Kamalakaran S, Zhang MQ, Dimitrova N, Hicks J. Major chromosomal breakpoint intervals in breast cancer co-localize with differentially methylated regions. Frontiers in Oncology. 2: 197. PMID 23293768 DOI: 10.3389/Fonc.2012.00197  0.384
2012 Xing H, Liao W, Mo Y, Zhang MQ. A novel Bayesian change-point algorithm for genome-wide analysis of diverse ChIPseq data types. Journal of Visualized Experiments : Jove. e4273. PMID 23271069 DOI: 10.3791/4273  0.372
2012 Wen H, Li Y, Malek SN, Kim YC, Xu J, Chen P, Xiao F, Huang X, Zhou X, Xuan Z, Mankala S, Hou G, Rowley JD, Zhang MQ, Wang SM. New fusion transcripts identified in normal karyotype acute myeloid leukemia. Plos One. 7: e51203. PMID 23251452 DOI: 10.1371/Journal.Pone.0051203  0.619
2012 Ouyang W, Liao W, Luo CT, Yin N, Huse M, Kim MV, Peng M, Chan P, Ma Q, Mo Y, Meijer D, Zhao K, Rudensky AY, Atwal G, Zhang MQ, et al. Novel Foxo1-dependent transcriptional programs control T(reg) cell function. Nature. 491: 554-9. PMID 23135404 DOI: 10.1038/Nature11581  0.537
2012 Sleumer MC, Wei G, Wang Y, Chang H, Xu T, Chen R, Zhang MQ. Regulatory elements of Caenorhabditis elegans ribosomal protein genes. Bmc Genomics. 13: 433. PMID 22928635 DOI: 10.1186/1471-2164-13-433  0.432
2012 Xing H, Mo Y, Liao W, Zhang MQ. Genome-wide localization of protein-DNA binding and histone modification by a Bayesian change-point method with ChIP-seq data. Plos Computational Biology. 8: e1002613. PMID 22844240 DOI: 10.1371/Journal.Pcbi.1002613  0.396
2012 Li R, Guo W, Gu J, Zhang MQ, Wang X. Chromatin state and microRNA determine different gene expression dynamics responsive to TNF stimulation. Genomics. 100: 297-302. PMID 22824656 DOI: 10.1016/J.Ygeno.2012.07.009  0.389
2012 Zhang Z, Ma X, Zhang MQ. Bivalent-like chromatin markers are predictive for transcription start site distribution in human. Plos One. 7: e38112. PMID 22768038 DOI: 10.1371/Journal.Pone.0038112  0.405
2012 Chicas A, Kapoor A, Wang X, Aksoy O, Evertts AG, Zhang MQ, Garcia BA, Bernstein E, Lowe SW. H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence. Proceedings of the National Academy of Sciences of the United States of America. 109: 8971-6. PMID 22615382 DOI: 10.1073/Pnas.1119836109  0.389
2012 Ma X, Kulkarni A, Zhang Z, Xuan Z, Serfling R, Zhang MQ. A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information. Nucleic Acids Research. 40: e50. PMID 22228832 DOI: 10.1093/Nar/Gkr1135  0.619
2011 Hu Z, Qian M, Zhang MQ. Novel Markov model of induced pluripotency predicts gene expression changes in reprogramming. Bmc Systems Biology. 5: S8. PMID 22784579 DOI: 10.1186/1752-0509-5-S2-S8  0.301
2011 Rajan P, Dalgliesh C, Carling PJ, Buist T, Zhang C, Grellscheid SN, Armstrong K, Stockley J, Simillion C, Gaughan L, Kalna G, Zhang MQ, Robson CN, Leung HY, Elliott DJ. Identification of novel androgen-regulated pathways and mRNA isoforms through genome-wide exon-specific profiling of the LNCaP transcriptome. Plos One. 6: e29088. PMID 22194994 DOI: 10.1371/Journal.Pone.0029088  0.399
2011 Wrzeszczynski KO, Varadan V, Byrnes J, Lum E, Kamalakaran S, Levine DA, Dimitrova N, Zhang MQ, Lucito R. Identification of tumor suppressors and oncogenes from genomic and epigenetic features in ovarian cancer. Plos One. 6: e28503. PMID 22174824 DOI: 10.1371/Journal.Pone.0028503  0.362
2011 Wang LY, Wang P, Li MJ, Qin J, Wang X, Zhang MQ, Wang J. EpiRegNet: constructing epigenetic regulatory network from high throughput gene expression data for humans. Epigenetics. 6: 1505-12. PMID 22139581 DOI: 10.4161/Epi.6.12.18176  0.414
2011 Watts JA, Zhang C, Klein-Szanto AJ, Kormish JD, Fu J, Zhang MQ, Zaret KS. Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development. Plos Genetics. 7: e1002277. PMID 21935353 DOI: 10.1371/Journal.Pgen.1002277  0.435
2011 Wu J, Akerman M, Sun S, McCombie WR, Krainer AR, Zhang MQ. SpliceTrap: a method to quantify alternative splicing under single cellular conditions. Bioinformatics (Oxford, England). 27: 3010-6. PMID 21896509 DOI: 10.1093/Bioinformatics/Btr508  0.377
2011 Yang S, Yalamanchili HK, Li X, Yao KM, Sham PC, Zhang MQ, Wang J. Correlated evolution of transcription factors and their binding sites. Bioinformatics (Oxford, England). 27: 2972-8. PMID 21896508 DOI: 10.1093/Bioinformatics/Btr503  0.35
2011 Shen M, Eyras E, Wu J, Khanna A, Josiah S, Rederstorff M, Zhang MQ, Stamm S. Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression. Nucleic Acids Research. 39: 9720-30. PMID 21880592 DOI: 10.1093/Nar/Gkr684  0.313
2011 Qin J, Li MJ, Wang P, Zhang MQ, Wang J. ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor. Nucleic Acids Research. 39: W430-6. PMID 21586587 DOI: 10.1093/Nar/Gkr332  0.386
2011 Zhang Z, Zhang MQ. Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes. Bmc Bioinformatics. 12: 155. PMID 21569556 DOI: 10.1186/1471-2105-12-155  0.404
2011 Renault VM, Thekkat PU, Hoang KL, White JL, Brady CA, Kenzelmann Broz D, Venturelli OS, Johnson TM, Oskoui PR, Xuan Z, Santo EE, Zhang MQ, Vogel H, Attardi LD, Brunet A. The pro-longevity gene FoxO3 is a direct target of the p53 tumor suppressor. Oncogene. 30: 3207-21. PMID 21423206 DOI: 10.1038/Onc.2011.35  0.639
2011 Wrzeszczynski KO, Varadan V, Kamalakaran S, Levine DA, Dimitrova N, Zhang MQ, Lucito R. Abstract 30: Identification of genomic and epigenetic features of tumor suppressors and oncogenes in ovarian cancer Cancer Research. 71: 30-30. DOI: 10.1158/1538-7445.Am2011-30  0.367
2010 Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, ... ... Zhang MQ, et al. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nature Biotechnology. 28: 1097-105. PMID 20852635 DOI: 10.1038/Nbt.1682  0.385
2010 Bernard D, Prasanth KV, Tripathi V, Colasse S, Nakamura T, Xuan Z, Zhang MQ, Sedel F, Jourdren L, Coulpier F, Triller A, Spector DL, Bessis A. A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression. The Embo Journal. 29: 3082-93. PMID 20729808 DOI: 10.1038/Emboj.2010.199  0.647
2010 Chicas A, Wang X, Zhang C, McCurrach M, Zhao Z, Mert O, Dickins RA, Narita M, Zhang M, Lowe SW. Dissecting the unique role of the retinoblastoma tumor suppressor during cellular senescence. Cancer Cell. 17: 376-87. PMID 20385362 DOI: 10.1016/J.Ccr.2010.01.023  0.322
2010 Wang SM, Zhang MQ. Transcriptome study for early hematopoiesis—achievement, challenge and new opportunity Journal of Cellular Physiology. 223: 549-552. PMID 20143329 DOI: 10.1002/Jcp.22065  0.36
2010 Zhang MQ, Smith AD. Challenges in Understanding Genome-Wide DNA Methylation Journal of Computer Science and Technology. 25: 26-34. DOI: 10.1007/S11390-010-9302-8  0.483
2009 Smith AD, Chung WY, Hodges E, Kendall J, Hannon G, Hicks J, Xuan Z, Zhang MQ. Updates to the RMAP short-read mapping software. Bioinformatics (Oxford, England). 25: 2841-2. PMID 19736251 DOI: 10.1093/Bioinformatics/Btp533  0.637
2009 Hodges E, Smith AD, Kendall J, Xuan Z, Ravi K, Rooks M, Zhang MQ, Ye K, Bhattacharjee A, Brizuela L, McCombie WR, Wigler M, Hannon GJ, Hicks JB. High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing. Genome Research. 19: 1593-605. PMID 19581485 DOI: 10.1101/Gr.095190.109  0.696
2009 Benita Y, Kikuchi H, Smith AD, Zhang MQ, Chung DC, Xavier RJ. An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia. Nucleic Acids Research. 37: 4587-602. PMID 19491311 DOI: 10.1093/Nar/Gkp425  0.504
2009 Kim YC, Wu Q, Chen J, Xuan Z, Jung YC, Zhang MQ, Rowley JD, Wang SM. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. Proceedings of the National Academy of Sciences of the United States of America. 106: 8278-83. PMID 19416867 DOI: 10.1073/Pnas.0903390106  0.652
2009 Rosenfeld JA, Wang Z, Schones DE, Zhao K, DeSalle R, Zhang MQ. Determination of enriched histone modifications in non-genic portions of the human genome. Bmc Genomics. 10: 143. PMID 19335899 DOI: 10.1186/1471-2164-10-143  0.752
2009 Niida A, Smith AD, Imoto S, Aburatani H, Zhang MQ, Akiyama T. Gene set-based module discovery in the breast cancer transcriptome. Bmc Bioinformatics. 10: 71. PMID 19243633 DOI: 10.1186/1471-2105-10-71  0.476
2009 Li T, Huang J, Jiang Y, Zeng Y, He F, Zhang MQ, Han Z, Zhang X. Multi-stage analysis of gene expression and transcription regulation in C57/B6 mouse liver development. Genomics. 93: 235-42. PMID 19015022 DOI: 10.1016/J.Ygeno.2008.10.006  0.318
2009 Wang X, Xuan Z, Zhao X, Li Y, Zhang MQ. High-resolution human core-promoter prediction with CoreBoost_HM. Genome Research. 19: 266-75. PMID 18997002 DOI: 10.1101/Gr.081638.108  0.71
2008 Niida A, Smith AD, Imoto S, Tsutsumi S, Aburatani H, Zhang MQ, Akiyama T. Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells. Bmc Bioinformatics. 9: 404. PMID 18823535 DOI: 10.1186/1471-2105-9-404  0.427
2008 Zhang C, Zhang Z, Castle J, Sun S, Johnson J, Krainer AR, Zhang MQ. Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. Genes & Development. 22: 2550-63. PMID 18794351 DOI: 10.1101/Gad.1703108  0.4
2008 Lin H, Zhang Z, Zhang MQ, Ma B, Li M. ZOOM! Zillions of oligos mapped. Bioinformatics (Oxford, England). 24: 2431-7. PMID 18684737 DOI: 10.1093/Bioinformatics/Btn416  0.323
2008 Hsieh MC, Das D, Sambandam N, Zhang MQ, Nahlé Z. Regulation of the PDK4 isozyme by the Rb-E2F1 complex. The Journal of Biological Chemistry. 283: 27410-7. PMID 18667418 DOI: 10.1074/Jbc.M802418200  0.302
2008 Wu Q, Kim YC, Lu J, Xuan Z, Chen J, Zheng Y, Zhou T, Zhang MQ, Wu CI, Wang SM. Poly A- transcripts expressed in HeLa cells. Plos One. 3: e2803. PMID 18665230 DOI: 10.1371/Journal.Pone.0002803  0.683
2008 Fan S, Zhang MQ, Zhang X. Histone Methylation Marks Play Important Roles in Predicting the Methylation Status of CpG Islands Biochemical and Biophysical Research Communications. 374: 559-564. PMID 18656446 DOI: 10.1016/J.Bbrc.2008.07.077  0.343
2008 Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K. Combinatorial patterns of histone acetylations and methylations in the human genome. Nature Genetics. 40: 897-903. PMID 18552846 DOI: 10.1038/Ng.154  0.755
2008 Chen G, Li W, Zhang QS, Regulski M, Sinha N, Barditch J, Tully T, Krainer AR, Zhang MQ, Dubnau J. Identification of synaptic targets of Drosophila pumilio. Plos Computational Biology. 4: e1000026. PMID 18463699 DOI: 10.1371/Journal.Pcbi.1000026  0.325
2008 Wu X, Jiang R, Zhang MQ, Li S. Network-based global inference of human disease genes. Molecular Systems Biology. 4: 189. PMID 18463613 DOI: 10.1038/Msb.2008.27  0.333
2008 Zhang C, Li WH, Krainer AR, Zhang MQ. RNA landscape of evolution for optimal exon and intron discrimination. Proceedings of the National Academy of Sciences of the United States of America. 105: 5797-802. PMID 18391195 DOI: 10.1073/Pnas.0801692105  0.381
2008 Smith AD, Xuan Z, Zhang MQ. Using quality scores and longer reads improves accuracy of Solexa read mapping. Bmc Bioinformatics. 9: 128. PMID 18307793 DOI: 10.1186/1471-2105-9-128  0.668
2008 Chen J, Kim YC, Jung YC, Xuan Z, Dworkin G, Zhang Y, Zhang MQ, Wang SM. Scanning the human genome at kilobase resolution. Genome Research. 18: 751-62. PMID 18292219 DOI: 10.1101/Gr.068304.107  0.65
2008 Eguchi J, Yan QW, Schones DE, Kamal M, Hsu CH, Zhang MQ, Crawford GE, Rosen ED. Interferon regulatory factors are transcriptional regulators of adipogenesis. Cell Metabolism. 7: 86-94. PMID 18177728 DOI: 10.1016/J.Cmet.2007.11.002  0.698
2008 Barrera LO, Li Z, Smith AD, Arden KC, Cavenee WK, Zhang MQ, Green RD, Ren B. Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs. Genome Research. 18: 46-59. PMID 18042645 DOI: 10.1101/Gr.6654808  0.54
2008 Wang X, Gu J, Zhang MQ, Li Y. Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species. Bioinformatics (Oxford, England). 24: 165-71. PMID 18037683 DOI: 10.1093/Bioinformatics/Btm572  0.302
2007 Fan S, Fang F, Zhang X, Zhang MQ. Putative zinc finger protein binding sites are over-represented in the boundaries of methylation-resistant CpG islands in the human genome. Plos One. 2: e1184. PMID 18030324 DOI: 10.1371/Journal.Pone.0001184  0.359
2007 Wang X, Bandyopadhyay S, Xuan Z, Zhao X, Zhang MQ, Zhang X. Prediction of transcription start sites based on feature selection using AMOSA. Computational Systems Bioinformatics. Computational Systems Bioinformatics Conference. 6: 183-93. PMID 17951823  0.61
2007 Jiang B, Zhang MQ, Zhang X. OSCAR: one-class SVM for accurate recognition of cis-elements. Bioinformatics (Oxford, England). 23: 2823-8. PMID 17921174 DOI: 10.1093/Bioinformatics/Btm473  0.374
2007 Zhang MQ. Computational analyses of eukaryotic promoters Bmc Bioinformatics. 8. PMID 17903284 DOI: 10.1186/1471-2105-8-S6-S3  0.339
2007 Mignone JL, Roig-Lopez JL, Fedtsova N, Schones DE, Manganas LN, Maletic-Savatic M, Keyes WM, Mills AA, Gleiberman A, Zhang MQ, Enikolopov G. Neural potential of a stem cell population in the hair follicle. Cell Cycle (Georgetown, Tex.). 6: 2161-70. PMID 17873521 DOI: 10.4161/Cc.6.17.4593  0.627
2007 Zhang C, Hastings ML, Krainer AR, Zhang MQ. Dual-specificity splice sites function alternatively as 5' and 3' splice sites. Proceedings of the National Academy of Sciences of the United States of America. 104: 15028-33. PMID 17848517 DOI: 10.1073/Pnas.0703773104  0.379
2007 Zhang C, Krainer AR, Zhang MQ. Evolutionary impact of limited splicing fidelity in mammalian genes. Trends in Genetics : Tig. 23: 484-8. PMID 17719121 DOI: 10.1016/J.Tig.2007.08.001  0.318
2007 Yang Z, Jiang H, Zhao F, Shankar DB, Sakamoto KM, Zhang MQ, Lin S. A highly conserved regulatory element controls hematopoietic expression of GATA-2 in zebrafish. Bmc Developmental Biology. 7: 97. PMID 17708765 DOI: 10.1186/1471-213X-7-97  0.435
2007 Das D, Zhang MQ. Predictive models of gene regulation: application of regression methods to microarray data. Methods in Molecular Biology (Clifton, N.J.). 377: 95-110. PMID 17634611 DOI: 10.1007/978-1-59745-390-5_5  0.384
2007 Kim TH, Abdullaev ZK, Smith AD, Ching KA, Loukinov DI, Green RD, Zhang MQ, Lobanenkov VV, Ren B. Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell. 128: 1231-45. PMID 17382889 DOI: 10.1016/J.Cell.2006.12.048  0.551
2007 Murchison EP, Stein P, Xuan Z, Pan H, Zhang MQ, Schultz RM, Hannon GJ. Critical roles for Dicer in the female germline. Genes & Development. 21: 682-93. PMID 17369401 DOI: 10.1101/Gad.1521307  0.675
2007 Zhao X, Xuan Z, Zhang MQ. Boosting with stumps for predicting transcription start sites. Genome Biology. 8: R17. PMID 17274821 DOI: 10.1186/Gb-2007-8-2-R17  0.663
2007 Schones DE, Smith AD, Zhang MQ. Statistical significance of cis-regulatory modules. Bmc Bioinformatics. 8: 19. PMID 17241466 DOI: 10.1186/1471-2105-8-19  0.703
2007 Smith AD, Sumazin P, Zhang MQ. Tissue-specific regulatory elements in mammalian promoters. Molecular Systems Biology. 3: 73. PMID 17224917 DOI: 10.1038/Msb4100114  0.529
2007 Jiang C, Xuan Z, Zhao F, Zhang MQ. TRED: a transcriptional regulatory element database, new entries and other development. Nucleic Acids Research. 35: D137-40. PMID 17202159 DOI: 10.1093/Nar/Gkl1041  0.675
2007 Zhang M. Computational Dissection Of Mammalian Regulation Networks Genome Informatics. 19: 197-197. DOI: 10.11234/Gi1990.19.197  0.331
2006 Kim YC, Jung YC, Xuan Z, Dong H, Zhang MQ, Wang SM. Pan-genome isolation of low abundance transcripts using SAGE tag. Febs Letters. 580: 6721-9. PMID 17113583 DOI: 10.1016/J.Febslet.2006.11.013  0.689
2006 Martinez MJ, Smith AD, Li B, Zhang MQ, Harrod KS. Computational prediction of novel components of lung transcriptional networks. Bioinformatics (Oxford, England). 23: 21-9. PMID 17050569 DOI: 10.1093/Bioinformatics/Btl531  0.463
2006 Li J, Zhang MQ, Zhang X. A new method for detecting human recombination hotspots and its applications to the HapMap ENCODE data. American Journal of Human Genetics. 79: 628-639. PMID 16960799 DOI: 10.1086/508066  0.31
2006 Fang F, Fan S, Zhang X, Zhang MQ. Predicting methylation status of CpG islands in the human brain. Bioinformatics (Oxford, England). 22: 2204-9. PMID 16837523 DOI: 10.1093/Bioinformatics/Btl377  0.392
2006 Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Human Molecular Genetics. 15: 2490-508. PMID 16825284 DOI: 10.1093/Hmg/Ddl171  0.481
2006 Das R, Dimitrova N, Xuan Z, Rollins RA, Haghighi F, Edwards JR, Ju J, Bestor TH, Zhang MQ. Computational prediction of methylation status in human genomic sequences. Proceedings of the National Academy of Sciences of the United States of America. 103: 10713-6. PMID 16818882 DOI: 10.1073/Pnas.0602949103  0.651
2006 Das D, Nahlé Z, Zhang MQ. Adaptively inferring human transcriptional subnetworks. Molecular Systems Biology. 2: 2006.0029. PMID 16760900 DOI: 10.1038/Msb4100067  0.441
2006 Suzuki H, Zuo Y, Wang J, Zhang MQ, Malhotra A, Mayeda A. Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing. Nucleic Acids Research. 34: e63. PMID 16682442 DOI: 10.1093/Nar/Gkl151  0.417
2006 Zhang C, Xuan Z, Otto S, Hover JR, McCorkle SR, Mandel G, Zhang MQ. A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome. Nucleic Acids Research. 34: 2238-46. PMID 16670430 DOI: 10.1093/Nar/Gkl248  0.683
2006 Zhang C, Li HR, Fan JB, Wang-Rodriguez J, Downs T, Fu XD, Zhang MQ. Profiling alternatively spliced mRNA isoforms for prostate cancer classification. Bmc Bioinformatics. 7: 202. PMID 16608523 DOI: 10.1186/1471-2105-7-202  0.31
2006 Smith AD, Sumazin P, Xuan Z, Zhang MQ. DNA motifs in human and mouse proximal promoters predict tissue-specific expression. Proceedings of the National Academy of Sciences of the United States of America. 103: 6275-80. PMID 16606849 DOI: 10.1073/Pnas.0508169103  0.7
2006 Rollins RA, Haghighi F, Edwards JR, Das R, Zhang MQ, Ju J, Bestor TH. Large-scale structure of genomic methylation patterns. Genome Research. 16: 157-63. PMID 16365381 DOI: 10.1101/Gr.4362006  0.381
2005 Zhang MQ. Using CorePromoter to find human core promoters Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. PMID 18428749 DOI: 10.1002/0471250953.Bi0209S10  0.403
2005 Prasanth KV, Prasanth SG, Xuan Z, Hearn S, Freier SM, Bennett CF, Zhang MQ, Spector DL. Regulating gene expression through RNA nuclear retention. Cell. 123: 249-63. PMID 16239143 DOI: 10.1016/J.Cell.2005.08.033  0.629
2005 Wang J, Smith PJ, Krainer AR, Zhang MQ. Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes. Nucleic Acids Research. 33: 5053-62. PMID 16147989 DOI: 10.1093/Nar/Gki810  0.503
2005 Xuan Z, Zhao F, Wang J, Chen G, Zhang MQ. Genome-wide promoter extraction and analysis in human, mouse, and rat. Genome Biology. 6: R72. PMID 16086854 DOI: 10.1186/Gb-2005-6-8-R72  0.709
2005 Smith AD, Sumazin P, Das D, Zhang MQ. Mining ChIP-chip data for transcription factor and cofactor binding sites. Bioinformatics (Oxford, England). 21: i403-12. PMID 15961485 DOI: 10.1093/Bioinformatics/Bti1043  0.507
2005 Smith AD, Sumazin P, Zhang MQ. Identifying tissue-selective transcription factor binding sites in vertebrate promoters. Proceedings of the National Academy of Sciences of the United States of America. 102: 1560-5. PMID 15668401 DOI: 10.1073/Pnas.0406123102  0.505
2005 Xuan Z, Zhang MQ. From worm to human: bioinformatics approaches to identify FOXO target genes. Mechanisms of Ageing and Development. 126: 209-15. PMID 15610780 DOI: 10.1016/J.Mad.2004.09.021  0.677
2005 Zhao F, Xuan Z, Liu L, Zhang MQ. TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies. Nucleic Acids Research. 33: D103-7. PMID 15608156 DOI: 10.1093/Nar/Gki004  0.692
2005 Long F, Liu H, Hahn C, Sumazin P, Zhang MQ, Zilberstein A. Genome-wide prediction and analysis of function-specific transcription factor binding sites. In Silico Biology. 4: 395-410. PMID 15506990  0.323
2005 Sumazin P, Chen G, Hata N, Smith AD, Zhang T, Zhang MQ. DWE: discriminating word enumerator. Bioinformatics (Oxford, England). 21: 31-8. PMID 15333453 DOI: 10.1093/Bioinformatics/Bth471  0.471
2005 Schones DE, Sumazin P, Zhang MQ. Similarity of position frequency matrices for transcription factor binding sites. Bioinformatics (Oxford, England). 21: 307-13. PMID 15319260 DOI: 10.1093/Bioinformatics/Bth480  0.669
2004 Dike S, Balija VS, Nascimento LU, Xuan Z, Ou J, Zutavern T, Palmer LE, Hannon G, Zhang MQ, McCombie WR. The mouse genome: experimental examination of gene predictions and transcriptional start sites. Genome Research. 14: 2424-9. PMID 15574821 DOI: 10.1101/Gr.3158304  0.69
2004 Das D, Banerjee N, Zhang MQ. Interacting models of cooperative gene regulation. Proceedings of the National Academy of Sciences of the United States of America. 101: 16234-9. PMID 15534222 DOI: 10.1073/Pnas.0407365101  0.422
2004 Zhang J, Li F, Li J, Zhang MQ, Zhang X. Evidence and characteristics of putative human alpha recombination hotspots. Human Molecular Genetics. 13: 2823-8. PMID 15385449 DOI: 10.1093/Hmg/Ddh310  0.353
2004 Kato M, Hata N, Banerjee N, Futcher B, Zhang MQ. Identifying combinatorial regulation of transcription factors and binding motifs. Genome Biology. 5: R56. PMID 15287978 DOI: 10.1186/Gb-2004-5-8-R56  0.446
2004 Chen G, Hata N, Zhang MQ. Transcription factor binding element detection using functional clustering of mutant expression data. Nucleic Acids Research. 32: 2362-71. PMID 15115798 DOI: 10.1093/Nar/Gkh557  0.414
2003 Zhang MQ. Prediction, annotation, and analysis of human promoters Cold Spring Harbor Symposia On Quantitative Biology. 68: 217-225. PMID 15338621 DOI: 10.1101/Sqb.2003.68.217  0.314
2003 Banerjee N, Zhang MQ. Identifying cooperativity among transcription factors controlling the cell cycle in yeast. Nucleic Acids Research. 31: 7024-7031. PMID 14627835 DOI: 10.1093/Nar/Gkg894  0.447
2003 Davuluri RV, Zhang MQ. Computer software to find genes in plant genomic DNA. Methods in Molecular Biology (Clifton, N.J.). 236: 87-108. PMID 14501060 DOI: 10.1385/1-59259-413-1:87  0.63
2003 Cartegni L, Wang J, Zhu Z, Zhang MQ, Krainer AR. ESEfinder: A web resource to identify exonic splicing enhancers. Nucleic Acids Research. 31: 3568-71. PMID 12824367 DOI: 10.1093/Nar/Gkg616  0.455
2003 Li Z, Van Calcar S, Qu C, Cavenee WK, Zhang MQ, Ren B. A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells. Proceedings of the National Academy of Sciences of the United States of America. 100: 8164-9. PMID 12808131 DOI: 10.1073/Pnas.1332764100  0.376
2003 Xuan Z, Wang J, Zhang MQ. Computational comparison of two mouse draft genomes and the human golden path. Genome Biology. 4: R1. PMID 12537546 DOI: 10.1186/Gb-2002-4-1-R1  0.684
2003 Kato M, Hata N, Banerjee N, Zhang MQ. Integrative Method for Identifying Combinatorial Regulation of Transcription Factors Genome Informatics. 14: 358-359. DOI: 10.11234/Gi1990.14.358  0.431
2002 Carmell MA, Xuan Z, Zhang MQ, Hannon GJ. The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. Genes & Development. 16: 2733-42. PMID 12414724 DOI: 10.1101/Gad.1026102  0.609
2002 Nahle Z, Polakoff J, Davuluri RV, McCurrach ME, Jacobson MD, Narita M, Zhang MQ, Lazebnik Y, Bar-Sagi D, Lowe SW. Direct coupling of the cell cycle and cell death machinery by E2F. Nature Cell Biology. 4: 859-64. PMID 12389032 DOI: 10.1038/Ncb868  0.565
2002 Zhang Y, Mei P, Lou R, Zhang MQ, Wu G, Qiang B, Zhang Z, Shen Y. Gene expression profiling in developing human hippocampus. Journal of Neuroscience Research. 70: 200-8. PMID 12271469 DOI: 10.1002/Jnr.10322  0.362
2002 Zhang MQ. Extracting functional information from microarrays: A challenge for functional genomics Proceedings of the National Academy of Sciences of the United States of America. 99: 12509-12511. PMID 12271149 DOI: 10.1073/Pnas.212532499  0.404
2002 Zhang MQ. Computational prediction of eukaryotic protein-coding genes Nature Reviews Genetics. 3: 698-709. PMID 12209144 DOI: 10.1038/Nrg890  0.389
2002 Xuan Z, McCombie WR, Zhang MQ. GFScan: a gene family search tool at genomic DNA level. Genome Research. 12: 1142-9. PMID 12097353 DOI: 10.1101/Gr.220102  0.634
2002 Banerjee N, Zhang MQ. Functional genomics as applied to mapping transcription regulatory networks Current Opinion in Microbiology. 5: 313-317. PMID 12057687 DOI: 10.1016/S1369-5274(02)00322-3  0.425
2002 Zhang T, Zhang M. Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes. Bioinformatics (Oxford, England). 17: 1232-3. PMID 11751235 DOI: 10.1093/Bioinformatics/17.12.1232  0.336
2002 Kato M, Hata N, Banerjee N, Zhang MQ. Inferring Combinatorial Regulation of Binding Sites and Transcription Factors on Gene Expression Genome Informatics. 13: 303-304. DOI: 10.11234/Gi1990.13.303  0.379
2001 Davuluri RV, Grosse I, Zhang MQ. Computational identification of promoters and first exons in the human genome. Nature Genetics. 29: 412-7. PMID 11726928 DOI: 10.1038/Ng780  0.635
2001 Weinmann AS, Bartley SM, Zhang T, Zhang MQ, Farnham PJ. Use of chromatin immunoprecipitation to clone novel E2F target promoters. Molecular and Cellular Biology. 21: 6820-32. PMID 11564866 DOI: 10.1128/Mcb.21.20.6820-6832.2001  0.415
2001 Kel AE, Kel-Margoulis OV, Farnham PJ, Bartley SM, Wingender E, Zhang MQ. Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors. Journal of Molecular Biology. 309: 99-120. PMID 11491305 DOI: 10.1006/Jmbi.2001.4650  0.445
2001 Zhang MQ. Discriminant analysis and its application in DNA sequence motif recognition. Briefings in Bioinformatics. 1: 331-42. PMID 11465051 DOI: 10.1093/Bib/1.4.331  0.341
2001 Tabaska JE, Davuluri RV, Zhang MQ. Identifying the 3'-terminal exon in human DNA. Bioinformatics (Oxford, England). 17: 602-7. PMID 11448878 DOI: 10.1093/Bioinformatics/17.7.602  0.585
2001 Wu Q, Zhang T, Cheng JF, Kim Y, Grimwood J, Schmutz J, Dickson M, Noonan JP, Zhang MQ, Myers RM, Maniatis T. Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. Genome Research. 11: 389-404. PMID 11230163 DOI: 10.1101/Gr.167301  0.354
2001 Farnham P, Graveel C, Kirmizis A, Bartley S, Kel A, Kel-Margoulis O, Wingender E, Zhang M, Jatkoe T, Madore S. Use of chromatin immunoprecipitation to study transcriptional deregulation in cancer cells Nature Genetics. 27: 53-53. DOI: 10.1038/87076  0.332
2000 Stamm S, Zhu J, Nakai K, Stoilov P, Stoss O, Zhang MQ. An alternative-exon database and its statistical analysis. Dna and Cell Biology. 19: 739-756. PMID 11177572 DOI: 10.1089/104454900750058107  0.344
2000 Davuluri RV, Suzuki Y, Sugano S, Zhang MQ. CART Classification of Human 5′ UTR Sequences Genome Research. 10: 1807-1816. PMID 11076865 DOI: 10.1101/Gr.Gr-1460R  0.624
2000 Ioshikhes IP, Zhang MQ. Large-scale human promoter mapping using CpG islands. Nature Genetics. 26: 61-63. PMID 10973249 DOI: 10.1038/79189  0.724
2000 Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Molecular and Cellular Biology. 20: 1063-71. PMID 10629063 DOI: 10.1128/Mcb.20.3.1063-1071.2000  0.346
2000 Machida M, Yamazaki S, Kunihiro S, Tanaka T, Kushida N, Jinnno K, Haikawa Y, Yamazaki J, Yamamoto S, Sekine M, Oguchi A, Nagai Y, Sakai M, Aoki K, Ogura K, ... ... Zhang MQ, et al. A 38 kb segment containing the cdc2 gene from the left arm of fission yeast chromosome II: sequence analysis and characterization of the genomic DNA and cDNAs encoded on the segment. Yeast (Chichester, England). 16: 71-80. PMID 10620777 DOI: 10.1002/(Sici)1097-0061(20000115)16:1<71::Aid-Yea505>3.0.Co;2-5  0.37
2000 Getz G, Levine E, Domany E, Zhang M. Super-paramagnetic clustering of yeast gene expression profiles Physica a: Statistical Mechanics and Its Applications. 279: 457-464. DOI: 10.1016/S0378-4371(99)00524-5  0.331
1999 Mayeda A, Badolato J, Kobayashi R, Zhang MQ, Gardiner EM, Krainer AR. Purification and characterization of human RNPS1: a general activator of pre-mRNA splicing. The Embo Journal. 18: 4560-70. PMID 10449421 DOI: 10.1093/Emboj/18.16.4560  0.306
1999 Zhang MQ. Promoter analysis of co-regulated genes in the yeast genome. Computers & Chemistry. 23: 233-50. PMID 10404618 DOI: 10.1016/S0097-8485(99)00020-0  0.437
1999 Ioshikhes I, Trifonov EN, Zhang MQ. Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure Proceedings of the National Academy of Sciences of the United States of America. 96: 2891-2895. PMID 10077607 DOI: 10.1073/Pnas.96.6.2891  0.712
1999 Zhang MQ. Large-scale gene expression data analysis: a new challenge to computational biologists. Genome Research. 9: 681-688. DOI: 10.1101/Gr.9.8.681  0.392
1998 Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Molecular Biology of the Cell. 9: 3273-97. PMID 9843569 DOI: 10.1091/Mbc.9.12.3273  0.374
1998 Zhang MQ. Identification of protein-coding regions in Arabidopsis thaliana genome based on quadratic discriminant analysis Plant Molecular Biology. 37: 803-806. PMID 9678575 DOI: 10.1023/A:1006023912378  0.358
1998 Chen T, Zhang MQ. Pombe: A gene-finding and exon-intron structure prediction system for fission yeast Yeast. 14: 701-710. PMID 9675815 DOI: 10.1002/(Sici)1097-0061(19980615)14:8<701::Aid-Yea247>3.0.Co;2-#  0.344
1998 Liu HX, Zhang M, Krainer AR. Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes & Development. 12: 1998-2012. PMID 9649504 DOI: 10.1101/Gad.12.13.1998  0.343
1998 Zhang MQ. Statistical Features of Human Exons and Their Flanking Regions Human Molecular Genetics. 7: 919-932. PMID 9536098 DOI: 10.1093/Hmg/7.5.919  0.4
1998 Zhang MQ. Identification of human gene core promoters in silico Genome Research. 8: 319-326. PMID 9521935 DOI: 10.1101/Gr.8.3.319  0.419
1997 Zhang MQ. Identification of protein coding regions in the human genome by quadratic discriminant analysis Proceedings of the National Academy of Sciences of the United States of America. 94: 565-568. PMID 9012824 DOI: 10.1073/Pnas.94.2.565  0.349
1994 Zhang MQ, Marr TG. Fission yeast gene structure and recognition. Nucleic Acids Research. 22: 1750-9. PMID 8202381 DOI: 10.1093/Nar/22.9.1750  0.34
1994 Stamm S, Zhang MQ, Marr TG, Helfman DM. A sequence compilation and comparison of exons that are alternatively spliced in neurons Nucleic Acids Research. 22: 1515-1526. PMID 8202349 DOI: 10.1093/Nar/22.9.1515  0.34
1993 Zhang MQ, Marr TG. Genome mapping by nonrandom anchoring: a discrete theoretical analysis. Proceedings of the National Academy of Sciences of the United States of America. 90: 600-4. PMID 8421694 DOI: 10.1073/Pnas.90.2.600  0.307
1993 Zhang MQ, Marr TG. Genome mapping by random anchoring: A discrete theoretical analysis Journal of Statistical Physics. 73: 611-623. DOI: 10.1007/Bf01054342  0.313
1990 Percus J, Zhang M. The quasi-one dimensional hard square gas Molecular Physics. 69: 347-355. DOI: 10.1080/00268979000100241  0.482
1990 Zhang MQ, Percus JK. A recursive density functional formalism for nonuniform fluids The Journal of Chemical Physics. 92: 6779-6785. DOI: 10.1063/1.458264  0.486
1989 Percus JK, Zhang MQ. Direct correlations of the capillary wave model and construction of the free energy density functional for the liquid–vapor interface system The Journal of Chemical Physics. 90: 3795-3799. DOI: 10.1063/1.455837  0.484
1989 Zhang MQ, Percus JK. Inhomogeneous Ising model on a multiconnected network Journal of Statistical Physics. 56: 695-708. DOI: 10.1007/Bf01016775  0.487
1988 Ord G, Percus J, Zhang M. Energetics of a discrete interface Nuclear Physics B. 305: 271-285. DOI: 10.1016/0550-3213(88)90296-9  0.492
1988 Zhang MQ, Wang J-, Lebowitz JL, Vall�s JL. Power law decay of correlations in stationary nonequilibrium lattice gases with conservative dynamics Journal of Statistical Physics. 52: 1461-1478. DOI: 10.1007/Bf01011660  0.559
1986 Krug J, Lebowitz JL, Spohn H, Zhang MQ. The fast rate limit of driven diffusive systems Journal of Statistical Physics. 44: 535-565. DOI: 10.1007/Bf01011309  0.416
Low-probability matches (unlikely to be authored by this person)
2009 Zhang MQ, Waterman MS, Zhang X. The Seventh Asia Pacific Bioinformatics Conference (APBC2009). Bmc Bioinformatics. 10: S1. PMID 19208108 DOI: 10.1186/1471-2105-10-S1-S1  0.3
2015 Yuan Y, Liu B, Xie P, Zhang MQ, Li Y, Xie Z, Wang X. Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit. Proceedings of the National Academy of Sciences of the United States of America. 112: 3158-63. PMID 25713348 DOI: 10.1073/Pnas.1413896112  0.299
2022 Song Y, Liang Z, Zhang J, Hu G, Wang J, Li Y, Guo R, Dong X, Babarinde IA, Ping W, Sheng YL, Li H, Chen Z, Gao M, Chen Y, ... ... Zhang MQ, et al. CTCF functions as an insulator for somatic genes and a chromatin remodeler for pluripotency genes during reprogramming. Cell Reports. 39: 110626. PMID 35385732 DOI: 10.1016/j.celrep.2022.110626  0.295
1995 Zhang MQ, Marr TG. Alignment of molecular sequences seen as random path analysis Journal of Theoretical Biology. 174: 119-129. PMID 7643608 DOI: 10.1006/Jtbi.1995.0085  0.295
2001 Ando S, Sarlis NJ, Krishnan J, Feng X, Refetoff S, Zhang MQ, Oldfield EH, Yen PM. Aberrant alternative splicing of thyroid hormone receptor in a TSH-secreting pituitary tumor is a mechanism for hormone resistance. Molecular Endocrinology (Baltimore, Md.). 15: 1529-38. PMID 11518802 DOI: 10.1210/Mend.15.9.0687  0.295
2020 Gupta H, Chandratre K, Sinha S, Huang T, Wu X, Cui J, Zhang MQ, Wang SM. Highly diversified core promoters in the human genome and their effects on gene expression and disease predisposition. Bmc Genomics. 21: 842. PMID 33256598 DOI: 10.1186/s12864-020-07222-5  0.295
2016 Ni Y, Cao B, Ma T, Niu G, Huo Y, Huang J, Chen D, Liu Y, Yu B, Zhang MQ, Niu H. Author response: Super-resolution imaging of a 2.5 kb non-repetitive DNA in situ in the nuclear genome using molecular beacon probes Elife. DOI: 10.7554/Elife.21660.022  0.294
2014 Zhang Y, Ma X, Fujimoto J, Wistuba I, Lam S, Stastny V, Gao B, Larsen J, Liu X, Minna JD, Zhang MQ, Gazdar AF. Abstract 1855: SCT methylation is a potential cancer biomarker for lung cancer Cancer Research. 74: 1855-1855. DOI: 10.1158/1538-7445.Am2014-1855  0.291
2011 Dai Q, Li L, Liu X, Yao Y, Zhao F, Zhang M. Integrating overlapping structures and background information of words significantly improves biological sequence comparison. Plos One. 6: e26779. PMID 22102867 DOI: 10.1371/Journal.Pone.0026779  0.29
2015 He C, Zhang MQ, Wang X. MICC: an R package for identifying chromatin interactions from ChIA-PET data. Bioinformatics (Oxford, England). PMID 26231426 DOI: 10.1093/Bioinformatics/Btv445  0.289
2019 Xie P, Gao M, Wang C, Zhang J, Noel P, Yang C, Von Hoff D, Han H, Zhang MQ, Lin W. SuperCT: a supervised-learning framework for enhanced characterization of single-cell transcriptomic profiles. Nucleic Acids Research. PMID 30799483 DOI: 10.1093/Nar/Gkz116  0.287
1999 Tabaska JE, Zhang MQ. Detection of polyadenylation signals in human DNA sequences Gene. 231: 77-86. PMID 10231571 DOI: 10.1016/S0378-1119(99)00104-3  0.283
2013 Kim MV, Ouyang W, Liao W, Zhang MQ, Li MO. The transcription factor Foxo1 controls central-memory CD8+ T cell responses to infection. Immunity. 39: 286-97. PMID 23932570 DOI: 10.1016/J.Immuni.2013.07.013  0.279
2011 Kato M, Yoon S, Hosono N, Leotta A, Sebat J, Tsunoda T, Zhang MQ. Inferring haplotypes of copy number variations from high-throughput data with uncertainty. G3 (Bethesda, Md.). 1: 35-42. PMID 22384316 DOI: 10.1534/G3.111.000174  0.279
2016 Wang J, Chen F, Liu L, Qi C, Wang B, Yan X, Huang C, Hou W, Zhang MQ, Chen Y, Du Y. Engineering EMT using 3D micro-scaffold to promote hepatic functions for drug hepatotoxicity evaluation. Biomaterials. 91: 11-22. PMID 26994875 DOI: 10.1016/J.Biomaterials.2016.03.001  0.277
2013 Tam KW, Zhang W, Soh J, Stastny V, Chen M, Sun H, Thu K, Rios JJ, Yang C, Marconett CN, Selamat SA, Laird-Offringa IA, Taguchi A, Hanash S, Shames D, ... ... Zhang MQ, et al. CDKN2A/p16 inactivation mechanisms and their relationship to smoke exposure and molecular features in non-small-cell lung cancer. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. 8: 1378-88. PMID 24077454 DOI: 10.1097/Jto.0B013E3182A46C0C  0.277
2015 Sun G, Hu Z, Min Z, Yan X, Guan Z, Su H, Fu Y, Ma X, Chen YG, Zhang MQ, Tao Q, Wu W. Small C-terminal Domain Phosphatase 3 Dephosphorylates the Linker Sites of R-Smads to Ensure TGFβ-mediated Germ Layer Induction in Xenopus Embryos. The Journal of Biological Chemistry. PMID 26013826 DOI: 10.1074/Jbc.M115.655605  0.275
2013 Qin J, Li MJ, Wang P, Wong NS, Wong MP, Xia Z, Tsao GS, Zhang MQ, Wang J. ProteoMirExpress: inferring microRNA and protein-centered regulatory networks from high-throughput proteomic and mRNA expression data. Molecular & Cellular Proteomics : McP. 12: 3379-87. PMID 23924514 DOI: 10.1074/Mcp.O112.019851  0.275
2017 Yang Y, Chen L, Gu J, Zhang H, Yuan J, Lian Q, Lv G, Wang S, Wu Y, Yang YT, Wang D, Liu Y, Tang J, Luo G, Li Y, ... ... Zhang MQ, et al. Recurrently deregulated lncRNAs in hepatocellular carcinoma. Nature Communications. 8: 14421. PMID 28194035 DOI: 10.1038/Ncomms14421  0.274
2013 May P, Liao W, Wu Y, Shuai B, McCombie WR, Zhang MQ, Liu QA. The effects of carbon dioxide and temperature on microRNA expression in Arabidopsis development. Nature Communications. 4: 2145. PMID 23900278 DOI: 10.1038/Ncomms3145  0.271
1993 Zhang MQ, Marr TG. A weight array method for splicing signal analysis. Computer Applications in the Biosciences : Cabios. 9: 499-509. PMID 8293321 DOI: 10.1093/Bioinformatics/9.5.499  0.271
2021 Zhang X, Liu X, Du Z, Wei L, Fang H, Dong Q, Niu J, Li Y, Gao J, Zhang MQ, Xie W, Wang X. The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence. Genome Research. PMID 34140314 DOI: 10.1101/gr.275235.121  0.271
2001 Liu HX, Cartegni L, Zhang MQ, Krainer AR. A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes. Nature Genetics. 27: 55-8. PMID 11137998 DOI: 10.1038/83762  0.27
2014 Chen Y, Ding Y, Yang L, Yu J, Liu G, Wang X, Zhang S, Yu D, Song L, Zhang H, Zhang C, Huo L, Huo C, Wang Y, Du Y, ... ... Zhang MQ, et al. Integrated omics study delineates the dynamics of lipid droplets in Rhodococcus opacus PD630. Nucleic Acids Research. 42: 1052-64. PMID 24150943 DOI: 10.1093/Nar/Gkt932  0.27
2020 Xing Y, Yang W, Liu G, Cui X, Meng H, Zhao H, Zhao X, Li J, Liu Z, Zhang MQ, Cai L. Dynamic Alternative Splicing During Mouse Preimplantation Embryo Development. Frontiers in Bioengineering and Biotechnology. 8: 35. PMID 32117919 DOI: 10.3389/fbioe.2020.00035  0.269
2015 Zhang H, Zhu C, Zhao Y, Li M, Wu L, Yang X, Wan X, Wang A, Zhang MQ, Sang X, Zhao H. Long non-coding RNA expression profiles of hepatitis Cvirus-related dysplasia and hepatocellular carcinoma. Oncotarget. PMID 26540467 DOI: 10.18632/Oncotarget.6087  0.269
2019 Abbas A, He X, Niu J, Zhou B, Zhu G, Ma T, Song J, Gao J, Zhang MQ, Zeng J. Integrating Hi-C and FISH data for modeling of the 3D organization of chromosomes. Nature Communications. 10: 2049. PMID 31053705 DOI: 10.1038/S41467-019-10005-6  0.268
2017 Shi M, Gao J, Zhang MQ. Web3DMol: interactive protein structure visualization based on WebGL. Nucleic Acids Research. PMID 28482028 DOI: 10.1093/Nar/Gkx383  0.265
2015 Ehrhardt K, Guinn MT, Quarton T, Zhang MQ, Bleris L. Reconfigurable hybrid interface for molecular marker diagnostics and in-situ reporting. Biosensors & Bioelectronics. 74: 744-750. PMID 26210472 DOI: 10.1016/J.Bios.2015.07.035  0.264
2010 Bandyopadhyay S, Mitra R, Maulik U, Zhang MQ. Development of the human cancer microRNA network. Silence. 1: 6. PMID 20226080 DOI: 10.1186/1758-907X-1-6  0.261
2015 Wu D, Wang D, Zhang MQ, Gu J. Fast dimension reduction and integrative clustering of multi-omics data using low-rank approximation: application to cancer molecular classification. Bmc Genomics. 16: 1022. PMID 26626453 DOI: 10.1186/S12864-015-2223-8  0.26
2016 Torck A, Kim J, Zhang M, Dussor G, Price T, Ray P. (274) RNA-seq based transcriptome profiling of human and mouse dorsal root ganglia provides insight into potential new pain targets. The Journal of Pain : Official Journal of the American Pain Society. 17: S44. PMID 28162506 DOI: 10.1016/J.Jpain.2016.01.180  0.258
2011 Cheng J, Zhu Y, He S, Lu Y, Chen J, Han B, Petrillo M, Wrzeszczynski KO, Yang S, Dai P, Zhai S, Han D, Zhang MQ, Li W, Liu X, et al. Functional mutation of SMAC/DIABLO, encoding a mitochondrial proapoptotic protein, causes human progressive hearing loss DFNA64. American Journal of Human Genetics. 89: 56-66. PMID 21722859 DOI: 10.1016/J.Ajhg.2011.05.027  0.255
2018 Zhao J, Zhang M, Zhang J, Chen L, Guo R, Lin G, Yin T, Shi H, Wang W, Xu C, Chen R, Xia X. P2.01-117 Concurrent Gene Alterations in Treatment-Naïve EGFR-Mutant Advanced Non-Small Cell Lung Cancer Journal of Thoracic Oncology. 13: S710. DOI: 10.1016/J.Jtho.2018.08.1172  0.255
2014 Li G, Li M, Zhang Y, Wang D, Li R, Guimerà R, Gao JT, Zhang MQ. ModuleRole: a tool for modulization, role determination and visualization in protein-protein interaction networks. Plos One. 9: e94608. PMID 24788790 DOI: 10.1371/Journal.Pone.0094608  0.254
1999 Zhu J, Zhang MQ. SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics (Oxford, England). 15: 607-11. PMID 10487868 DOI: 10.1093/bioinformatics/15.7.607  0.253
2021 Yang L, Chen F, Zhu H, Chen Y, Dong B, Shi M, Wang W, Jiang Q, Zhang L, Huang X, Zhang MQ, Wu H. 3D genome alterations associated with dysregulated HOXA13 expression in high-risk T-lineage acute lymphoblastic leukemia. Nature Communications. 12: 3708. PMID 34140506 DOI: 10.1038/s41467-021-24044-5  0.252
2015 Li L, Tang J, Zhang B, Yang W, LiuGao M, Wang R, Tan Y, Fan J, Chang Y, Fu J, Jiang F, Chen C, Yang Y, Gu J, Wu D, ... ... Zhang MQ, et al. Epigenetic modification of MiR-429 promotes liver tumour-initiating cell properties by targeting Rb binding protein 4. Gut. 64: 156-67. PMID 24572141 DOI: 10.1136/Gutjnl-2013-305715  0.25
2013 Zhou D, Wu D, Li Z, Qian M, Zhang MQ. Population dynamics of cancer cells with cell-state conversions between cancer stem cells and non-stem cancer cells F1000research. 4. DOI: 10.7490/F1000Research.1093108.1  0.249
2018 Wang C, Tan Z, Niu B, Tsang KY, Tai A, Chan WCW, Lo RLK, Leung KKH, Dung NWF, Itoh N, Zhang MQ, Chan D, Cheah KSE. Inhibiting the integrated stress response pathway prevents aberrant chondrocyte differentiation thereby alleviating chondrodysplasia. Elife. 7. PMID 30024379 DOI: 10.7554/Elife.37673  0.247
2008 Nahlé Z, Hsieh M, Pietka T, Coburn CT, Grimaldi PA, Zhang MQ, Das D, Abumrad NA. CD36-dependent regulation of muscle FoxO1 and PDK4 in the PPAR delta/beta-mediated adaptation to metabolic stress. The Journal of Biological Chemistry. 283: 14317-26. PMID 18308721 DOI: 10.1074/Jbc.M706478200  0.244
2020 Zhao F, Liu Y, Su X, Lee JE, Song Y, Wang D, Ge K, Gao J, Zhang MQ, Li H. Molecular basis for histone H3 "K4me3-K9me3/2" methylation pattern readout by Spindlin1. The Journal of Biological Chemistry. 295: 16877-16887. PMID 33453918 DOI: 10.1074/jbc.RA120.013649  0.243
2020 Zhao F, Liu Y, Su X, Lee JE, Song Y, Wang D, Ge K, Gao J, Zhang MQ, Li H. Molecular basis for histone H3 "K4me3-K9me3/2" methylation pattern readout by Spindlin1. The Journal of Biological Chemistry. PMID 32994220 DOI: 10.1074/jbc.RA120.013649  0.243
2014 Xie P, Liu Y, Li Y, Zhang MQ, Wang X. MIROR: a method for cell-type specific microRNA occupancy rate prediction. Molecular Biosystems. 10: 1377-84. PMID 24668253 DOI: 10.1039/C3Mb70610A  0.243
2018 Li J, Lee Y, Li Y, Jiang Y, Lu H, Zang W, Zhao X, Liu L, Chen Y, Tan H, Yang Z, Zhang MQ, Mak TW, Ni L, Dong C. Co-inhibitory Molecule B7 Superfamily Member 1 Expressed by Tumor-Infiltrating Myeloid Cells Induces Dysfunction of Anti-tumor CD8T Cells. Immunity. PMID 29625896 DOI: 10.1016/J.Immuni.2018.03.018  0.243
2021 Yang Y, Paul A, Bach TN, Huang ZJ, Zhang MQ. Single-cell alternative polyadenylation analysis delineates GABAergic neuron types. Bmc Biology. 19: 144. PMID 34301239 DOI: 10.1186/s12915-021-01076-3  0.239
2007 Zhang J, Jiang B, Li M, Tromp J, Zhang X, Zhang MQ. Computing exact P-values for DNA motifs. Bioinformatics (Oxford, England). 23: 531-7. PMID 17237046 DOI: 10.1093/Bioinformatics/Btl662  0.238
2023 Liang Z, Gilbreath C, Liu W, Wang Y, Zhang MQ, Zhang DE, Wu S, Fu XD. Chromatin-associated RNA Dictates the ecDNA Interactome in the Nucleus. Biorxiv : the Preprint Server For Biology. PMID 37547001 DOI: 10.1101/2023.07.27.550855  0.238
2019 Chen L, Wang M, Zhang X, Zhang M, Hu Y, Shi Z, Xi P, Gao J. Group-sparsity-based super-resolution dipole orientation mapping (GS-SDOM). Ieee Transactions On Medical Imaging. PMID 30990177 DOI: 10.1109/Tmi.2019.2910221  0.237
2018 Dong Q, Wei L, Zhang MQ, Wang X. Regulatory RNA binding proteins contribute to the transcriptome-wide splicing alterations in human cellular senescence. Aging. PMID 29936497 DOI: 10.18632/aging.101485  0.237
2014 Sephton CF, Tang AA, Kulkarni A, West J, Brooks M, Stubblefield JJ, Liu Y, Zhang MQ, Green CB, Huber KM, Huang EJ, Herz J, Yu G. Activity-dependent FUS dysregulation disrupts synaptic homeostasis. Proceedings of the National Academy of Sciences of the United States of America. 111: E4769-78. PMID 25324524 DOI: 10.1073/Pnas.1406162111  0.236
2011 Tang MHE, Varadan V, Kamalakaran S, Zhang MQ, Dimitrova N, Hicks J. A method for finding novel associations between genome-wide copy number and dna methylation patterns Proceedings - Ieee International Workshop On Genomic Signal Processing and Statistics. 78-82.  0.235
2012 He M, Liu Y, Wang X, Zhang MQ, Hannon GJ, Huang ZJ. Cell-type-based analysis of microRNA profiles in the mouse brain. Neuron. 73: 35-48. PMID 22243745 DOI: 10.1016/J.Neuron.2011.11.010  0.234
2016 Zhanghao K, Chen L, Yang XS, Wang MY, Jing ZL, Han HB, Zhang MQ, Jin D, Gao JT, Xi P. Super-resolution dipole orientation mapping via polarization demodulation. Light, Science & Applications. 5: e16166. PMID 30167126 DOI: 10.1038/Lsa.2016.166  0.233
2010 Mitra R, Bandyopadhyay S, Maulik U, Zhang MQ. SFSSClass: an integrated approach for miRNA based tumor classification. Bmc Bioinformatics. 11: S22. PMID 20122194 DOI: 10.1186/1471-2105-11-S1-S22  0.232
2007 Zhang C, Zhang X, Zhang MQ, Li Y. Neighbor number, valley seeking and clustering Pattern Recognition Letters. 28: 173-180. DOI: 10.1016/J.Patrec.2006.07.003  0.23
2019 Liu X, Wei L, Dong Q, Liu L, Zhang MQ, Xie Z, Wang X. A large-scale CRISPR screen and identification of essential genes in cellular senescence bypass. Aging. PMID 31219803 DOI: 10.18632/aging.102034  0.228
1991 Zhang MQ. The nonuniform hard-rod fluid revisited Journal of Statistical Physics. 63: 1191-1202. DOI: 10.1007/Bf01030006  0.228
2023 Yeboah RL, Pira CU, Shankel M, Cooper AM, Haro E, Ly VD, Wysong K, Zhang M, Sandoval N, Oberg KC. Sox, Fox, and Lmx1b binding sites differentially regulate a Gdf5-Associated regulatory region during elbow development. Frontiers in Cell and Developmental Biology. 11: 1215406. PMID 37492222 DOI: 10.3389/fcell.2023.1215406  0.228
2016 Li G, Chen Y, Snyder MP, Zhang MQ. ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis. Nucleic Acids Research. PMID 27625391 DOI: 10.1093/Nar/Gkw809  0.224
2007 Dahl F, Stenberg J, Fredriksson S, Welch K, Zhang M, Nilsson M, Bicknell D, Bodmer WF, Davis RW, Ji H. Multigene amplification and massively parallel sequencing for cancer mutation discovery. Proceedings of the National Academy of Sciences of the United States of America. 104: 9387-92. PMID 17517648 DOI: 10.1073/Pnas.0702165104  0.22
2015 Mehta HH, Liu Y, Zhang MQ, Spiro S. Genome-wide analysis of the response to nitric oxide in uropathogenic Escherichia coli CFT073. Microbial Genomics. 1: e000031. PMID 28348816 DOI: 10.1099/mgen.0.000031  0.219
2018 Wang M, Chen M, Zhanghao K, Zhang X, Jing Z, Gao J, Zhang MQ, Jin D, Dai Z, Xi P, Dai Q. Polarization-based super-resolution imaging of surface-enhanced Raman scattering nanoparticles with orientational information. Nanoscale. PMID 30211422 DOI: 10.1039/C8Nr04808H  0.219
1991 Zhang MQ. Crystallization of one-dimensional hard rods with a periodic interaction Journal of Physics a: Mathematical and General. 24: 3949-3958. DOI: 10.1088/0305-4470/24/16/029  0.218
2016 Zhang Y, Tang J, Yang N, Liu Q, Zhang Q, Zhang Y, Li N, Zhao Y, Li S, Liu S, Zhou H, Li X, Tian M, Deng J, Xie P, ... ... Zhang MQ, et al. FAT10 Is Critical in Influenza A Virus Replication by Inhibiting Type I IFN. Journal of Immunology (Baltimore, Md. : 1950). PMID 27354218 DOI: 10.4049/Jimmunol.1501563  0.215
2018 Li B, Ge P, Murray KA, Sheth P, Zhang M, Nair G, Sawaya MR, Shin WS, Boyer DR, Ye S, Eisenberg DS, Zhou ZH, Jiang L. Cryo-EM of full-length alpha-synuclein reveals fibril polymorphs with a common structural kernel. Nature Communications. 9: 3609-3609. DOI: 10.2210/Pdb6Cu7/Pdb  0.215
2019 Percus JK, Zhang MQ. One-dimensional inhomogeneous Ising model with periodic boundary conditions. Physical Review. B, Condensed Matter. 38: 11737-11740. PMID 9946059 DOI: 10.1103/Physrevb.38.11737  0.214
2022 Yuan J, Houlahan KE, Ramanand SG, Lee S, Baek G, Yang Y, Chen Y, Strand DW, Zhang MQ, Boutros PC, Mani RS. Prostate cancer transcriptomic regulation by the interplay of germline risk alleles, somatic mutations and 3D-genomic architecture. Cancer Discovery. PMID 36108240 DOI: 10.1158/2159-8290.CD-22-0027  0.213
2023 Guo X, Guo Y, Chen H, Liu X, He P, Li W, Zhang MQ, Dai Q. Systematic comparison of genome information processing and boundary recognition tools used for genomic island detection. Computers in Biology and Medicine. 166: 107550. PMID 37826950 DOI: 10.1016/j.compbiomed.2023.107550  0.212
2014 Sheng M, Zhong Y, Chen Y, Du J, Ju X, Zhao C, Zhang G, Zhang L, Liu K, Yang N, Xie P, Li D, Zhang MQ, Jiang C. Hsa-miR-1246, hsa-miR-320a and hsa-miR-196b-5p inhibitors can reduce the cytotoxicity of Ebola virus glycoprotein in vitro. Science China. Life Sciences. 57: 959-72. PMID 25218824 DOI: 10.1007/S11427-014-4742-Y  0.21
1989 Zhang MQ. A fast vectorized multispin coding algorithm for 3D Monte Carlo simulations using Kawasaki spin-exchange dynamics Journal of Statistical Physics. 56: 939-950. DOI: 10.1007/Bf01016787  0.21
2018 Wang C, Tan Z, Niu B, Tsang KY, Tai A, Chan WCW, Lo RLK, Leung KKH, Dung NWF, Itoh N, Zhang MQ, Chan D, Cheah KSE. Author response: Inhibiting the integrated stress response pathway prevents aberrant chondrocyte differentiation thereby alleviating chondrodysplasia Elife. DOI: 10.7554/Elife.37673.039  0.208
2015 Gao M, Zhao Z, Lv P, Li Y, Gao J, Zhang M, Zhao B. Quantitative combination of natural anti-oxidants prevents metabolic syndrome by reducing oxidative stress. Redox Biology. 6: 206-217. PMID 26262997 DOI: 10.1016/J.Redox.2015.06.013  0.206
2006 Zhang M, Tateishi G, Bergmann G. Discrepancies between experiment and theory in the superconducting proximity effect Physical Review B - Condensed Matter and Materials Physics. 74. DOI: 10.1103/Physrevb.74.014506  0.204
1988 Zhang MQ. Pair correlation function for Ising spins with competing dynamics Journal of Statistical Physics. 53: 1217-1225. DOI: 10.1007/Bf01023865  0.204
1990 Zhang MQ. Entropy functional of a nonuniform Ising model on a two-row lattice Journal of Physics a: General Physics. 23: 2173-2181. DOI: 10.1088/0305-4470/23/11/038  0.203
2017 Liu H, Zhang M, Han J, Song J, Qiao W. P1.01-072 Epithelial-To-Mesenchymal Transition (EMT) in Lung Cancer: Classic Reproduction Journal of Thoracic Oncology. 12. DOI: 10.1016/J.Jtho.2017.09.726  0.203
2023 Zhang W, Suo J, Yan Y, Yang R, Lu Y, Jin Y, Gao S, Li S, Gao J, Zhang M, Dai Q. iSMOD: an integrative browser for image-based single-cell multi-omics data. Nucleic Acids Research. PMID 37439331 DOI: 10.1093/nar/gkad580  0.201
2019 Wang D, Zhu Y, Tang J, Lian Q, Luo G, Wen W, Zhang MQ, Wang H, Chen L, Gu J. Integrative molecular analysis of metastatic hepatocellular carcinoma. Bmc Medical Genomics. 12: 164. PMID 31722693 DOI: 10.1186/S12920-019-0586-4  0.198
2006 Ji H, Kumm J, Zhang M, Farnam K, Salari K, Faham M, Ford JM, Davis RW. Molecular inversion probe analysis of gene copy alterations reveals distinct categories of colorectal carcinoma. Cancer Research. 66: 7910-9. PMID 16912164 DOI: 10.1158/0008-5472.Can-06-0595  0.196
2015 Cheah KSE, Au T, Niu B, Chan D, Zhang MQ. The Changing RNAome of the Developing Nucleus Pulposus of the Intervertebral Disc: Implications for Intervertebral Disc Disease Global Spine Journal. 5. DOI: 10.1055/S-0035-1554146  0.195
2022 Niu B, Bach TN, Chen X, Chandratre KR, Isaac Murray J, Zhao Z, Zhang M. Computational modeling and analysis of the morphogenetic domain signaling networks regulating embryogenesis. Computational and Structural Biotechnology Journal. 20: 3653-3666. PMID 35891777 DOI: 10.1016/j.csbj.2022.05.058  0.194
2022 Wang R, Chen F, Chen Q, Wan X, Shi M, Chen AK, Ma Z, Li G, Wang M, Ying Y, Liu Q, Li H, Zhang X, Ma J, Zhong J, ... ... Zhang MQ, et al. MyoD is a 3D genome structure organizer for muscle cell identity. Nature Communications. 13: 205. PMID 35017543 DOI: 10.1038/s41467-021-27865-6  0.191
2023 Lee MF, Gan JY, Zhang M, Stokan MJ, Palme CE. The phrenic nerve; the forgotten nerve in head and neck surgery. Anz Journal of Surgery. PMID 36792555 DOI: 10.1111/ans.18322  0.188
2016 Ray P, Torck A, Zhang M, Dussor G, Price T. (277) Searching for the transcriptomic footprint of chronic pain. The Journal of Pain : Official Journal of the American Pain Society. 17: S45. PMID 28162510 DOI: 10.1016/J.Jpain.2016.01.183  0.187
2011 Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, ... ... Zhang M, et al. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biology. 12: R40. PMID 21501500 DOI: 10.1186/Gb-2011-12-4-R40  0.185
1990 Zhang MQ. Zero-thickness membrane interface and Schrödinger equation Physical Review A. 42: 4588-4590. DOI: 10.1103/Physreva.42.4588  0.184
1999 Pan F, Zhang M, Ding M, Liu BX, Zhou YM, Wang DS. Metastable rhombohedral Fe phase formed in Fe/Sb multilayers and its magnetic properties Physical Review B. 59: 11458-11464. DOI: 10.1103/Physrevb.59.11458  0.184
2017 Guo DL, Ma X, Zhang RT, Zhang SF, Zhu XL, Feng WT, Gao Y, Hai B, Zhang M, Wang HB, Huang ZK. State-selective electron capture in 30- and 100-keV He++He collisions Physical Review A. 95. DOI: 10.1103/Physreva.95.012707  0.183
2016 Bi WL, Zhang M, Wu WW, Mei Y, Dunn IF. Meningioma Genomics: Diagnostic, Prognostic, and Therapeutic Applications. Frontiers in Surgery. 3: 40. PMID 27458586 DOI: 10.3389/Fsurg.2016.00040  0.183
2006 Dimitrova N, Cheung YH, Zhang M. Analysis and visualization of DNA spectrograms: Open possibilities for the genome research Proceedings of the 14th Annual Acm International Conference On Multimedia, Mm 2006. 1017-1024. DOI: 10.1145/1180639.1180861  0.183
2017 Guo W, Zhang MQ, Wu H. Erratum: Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon elements. Scientific Reports. 7: 39440. PMID 28294112 DOI: 10.1038/srep39440  0.179
2012 Zhao X, Iakoucheva LM, Zhang MQ. Prioritizing Disease Genes and Understanding Disease Pathways International Journal of Knowledge Discovery in Bioinformatics. 3: 31-49. DOI: 10.4018/ijkdb.2012100103  0.178
2022 Shen W, Zhang Y, Shi M, Ye B, Yin M, Li P, Shi S, Jin Y, Zhang Z, Zhang MQ, Chen Y, Zhao Z. Profiling and characterization of constitutive chromatin-enriched RNAs. Iscience. 25: 105349. PMID 36325053 DOI: 10.1016/j.isci.2022.105349  0.177
2021 Xing H, Wu Y, Zhang MQ, Chen Y. Deciphering hierarchical organization of topologically associated domains through change-point testing. Bmc Bioinformatics. 22: 183. PMID 33838653 DOI: 10.1186/s12859-021-04113-8  0.177
2017 Guo DL, Ma X, Zhang SF, Zhu XL, Feng WT, Zhang RT, Gao Y, Hai B, Zhang M, Qian DB, Yan S, Zhang P. Dynamics of transfer ionization inp-He collisions at intermediate energies Physical Review A. 95. DOI: 10.1103/Physreva.95.022705  0.176
1999 Pan F, Zhang M, Ding M, Liu BX, Zhou YM, Wang DS. Erratum: Metastable rhombohedral Fe phase formed in Fe/Sb multilayers and its magnetic properties [Phys. Rev. B 59, 11 458 (1999)] Physical Review B. 60: 6923-6923. DOI: 10.1103/Physrevb.60.6923.2  0.174
2023 Lai D, Zhang M, Li R, Zhang C, Zhang P, Liu Y, Gao S, Foroud T. Identifying Genes Associated with Alzheimer's Disease Using Gene-Based Polygenic Risk Score. Journal of Alzheimer's Disease : Jad. PMID 38007651 DOI: 10.3233/JAD-230510  0.169
2014 Marwaha P, Xicola RM, Kim YC, Snyder CL, Carroll T, Syngal S, Buxbaum S, Zhang MQ, Want SM, Lynch HT, Bessa X, Andreu M, Jover R, Carracedo A, Castells A, et al. 675 Unveiling of DNA Repair Gene Alterations in Non-Lynch Hereditary Colorectal Cancer Through Exome Sequencing Gastroenterology. 146: S-119. DOI: 10.1016/S0016-5085(14)60429-7  0.168
2023 Yuan Z, Pan W, Zhao X, Zhao F, Xu Z, Li X, Zhao Y, Zhang MQ, Yao J. SODB facilitates comprehensive exploration of spatial omics data. Nature Methods. PMID 36797409 DOI: 10.1038/s41592-023-01773-7  0.163
2012 Sung RJ, Zhang M, Qi Y, Verdine GL. Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM. The Journal of Biological Chemistry. 287: 18044-54. PMID 22465958 DOI: 10.1074/Jbc.M111.313635  0.163
2013 Zhang M, Yan L, Zhu G, Holifield M, Todd D, Zhang S. Streptococcus troglodytidis sp. nov., isolated from a foot abscess of a chimpanzee (Pan troglodytes). International Journal of Systematic and Evolutionary Microbiology. 63: 449-53. PMID 22467158 DOI: 10.1099/Ijs.0.038133-0  0.157
2021 Guo T, Chen Y, Shi M, Li X, Zhang MQ. Integration of single cell data by disentangled representation learning. Nucleic Acids Research. PMID 34850092 DOI: 10.1093/nar/gkab978  0.152
2019 Wei L, Yuan Y, Hu T, Li S, Cheng T, Lei J, Xie Z, Zhang MQ, Wang X. Regulation by competition: a hidden layer of gene regulatory network Quantitative Biology. 7: 110-121. DOI: 10.1007/s40484-018-0162-5  0.152
2021 Gao JX, Wang ZY, Zhang MQ, Qian MP, Jiang DQ. A data-driven method to learn a jump diffusion process from aggregate biological gene expression data. Journal of Theoretical Biology. 110923. PMID 34606876 DOI: 10.1016/j.jtbi.2021.110923  0.149
2020 Mathur R, Zhang Y, Grimmer MR, Hong C, Zhang M, Bollam S, Petrecca K, Clarke J, Berger MS, Phillips JJ, Oberheim-Bush NA, Molinaro AM, Chang SM, Costello JF. MGMT promoter methylation level in newly diagnosed low-grade glioma is a predictor of hypermutation at recurrence. Neuro-Oncology. PMID 32166314 DOI: 10.1093/Neuonc/Noaa059  0.141
2021 Wang Z, Zhong Y, Ye Z, Zeng L, Chen Y, Shi M, Yuan Z, Zhou Q, Qian M, Zhang MQ. MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection. Nucleic Acids Research. PMID 34850940 DOI: 10.1093/nar/gkab1132  0.136
2023 Zhang Y, Zhang C, Huo W, Wang X, Zhang M, Palmer K, Chen M. An expectation-maximization algorithm for estimating proportions of deletions among bacterial populations with application to study antibiotic resistance gene transfer in . Marine Life Science & Technology. 1-16. PMID 36744155 DOI: 10.1007/s42995-022-00144-z  0.134
2023 Guo T, Yuan Z, Pan Y, Wang J, Chen F, Zhang MQ, Li X. SPIRAL: integrating and aligning spatially resolved transcriptomics data across different experiments, conditions, and technologies. Genome Biology. 24: 241. PMID 37864231 DOI: 10.1186/s13059-023-03078-6  0.133
2015 Zhang M, Zhang MW, Zhang L, Zhang L. Methyl jasmonate and its potential in cancer therapy. Plant Signaling & Behavior. 0. PMID 26208889 DOI: 10.1080/15592324.2015.1062199  0.128
2021 Warang A, Zhang M, Zhang S, Shen Z. A panel of real-time PCR assays for the detection of Bourbon virus, Heartland virus, West Nile virus, and in major disease-transmitting vectors. Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 10406387211039549. PMID 34414840 DOI: 10.1177/10406387211039549  0.127
2019 Madsen C, Goñi Moreno A, P U, Palchick Z, Roehner N, Atallah C, Bartley B, Choi K, Cox RS, Gorochowski T, Grünberg R, Macklin C, McLaughlin J, Meng X, Nguyen T, ... ... Zhang M, et al. Synthetic Biology Open Language (SBOL) Version 2.3. Journal of Integrative Bioinformatics. PMID 31199770 DOI: 10.1515/Jib-2019-0025  0.124
2023 Tang B, Wang X, He H, Chen R, Qiao G, Yang Y, Xu Z, Wang L, Dong Q, Yu J, Zhang M, Shi M, Wang J. Aging-disturbed FUS Phase Transition Impairs Hematopoietic Stem Cell by Altering Chromatin Structure. Blood. PMID 37748139 DOI: 10.1182/blood.2023020539  0.121
2024 Abbas A, Chandratre K, Gao Y, Yuan J, Zhang MQ, Mani RS. ChIPr: accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features. Genome Biology. 25: 15. PMID 38217027 DOI: 10.1186/s13059-023-03158-7  0.12
2024 Larose PC, Brisson BA, Sanchez A, Monteith G, Singh A, Zhang M. Near-infrared fluorescence cholangiography in dogs: A pilot study. Veterinary Surgery : Vs. 53: 18-19. PMID 38158768 DOI: 10.1111/vsu.14056  0.12
2013 Sung RJ, Zhang M, Qi Y, Verdine GL. Structural and biochemical analysis of DNA helix invasion by the bacterial 8-oxoguanine DNA glycosylase MutM. The Journal of Biological Chemistry. 288: 10012-23. PMID 23404556 DOI: 10.1074/Jbc.M112.415612  0.119
2016 Meng Y, Wang L, Chen D, Chang Y, Zhang M, Xu JJ, Zhou R, Zhang QY. LAPTM4B: an oncogene in various solid tumors and its functions. Oncogene. PMID 27212036 DOI: 10.1038/onc.2016.189  0.118
2012 Qi Y, Nam K, Spong MC, Banerjee A, Sung RJ, Zhang M, Karplus M, Verdine GL. Strandwise translocation of a DNA glycosylase on undamaged DNA. Proceedings of the National Academy of Sciences of the United States of America. 109: 1086-91. PMID 22219368 DOI: 10.1073/Pnas.1111237108  0.116
2019 Zhang M, Zhang Y, Zheng E, Gephart MH, Veeravagu A, Desai A, Ratliff JK, Li G. Outcomes and costs following Ommaya placement with thrombocytopenia among US cancer patients. World Neurosurgery. PMID 31866457 DOI: 10.1016/j.wneu.2019.12.063  0.115
2014 Baldwin LA, Hoff JT, Lefringhouse J, Zhang M, Jia C, Liu Z, Erfani S, Jin H, Xu M, She QB, van Nagell JR, Wang C, Chen L, Plattner R, Kaetzel DM, et al. CD151-α3β1 integrin complexes suppress ovarian tumor growth by repressing slug-mediated EMT and canonical Wnt signaling. Oncotarget. 5: 12203-17. PMID 25356755 DOI: 10.18632/Oncotarget.2622  0.115
2020 Zhang Y, Zhang M, Lin M, Gephart MH, Veeravagu A, Ratliff JK, Li G. Costs and Complications Associated with Resection of Supratentorial Tumors with and without the Operative Microscope in the United States. World Neurosurgery. PMID 32171932 DOI: 10.1016/j.wneu.2020.03.021  0.114
2013 Zhou D, Wu D, Li Z, Qian M, Zhang MQ. Population dynamics of cancer cells with cell state conversions. Quantitative Biology (Beijing, China). 1: 201-208. PMID 26085954 DOI: 10.1007/s40484-013-0014-2  0.114
2023 Nudelman K, Nho K, Zhang M, McDonald BC, Zhai W, Small BJ, Wegel CE, Jacobsen PB, Jim HSL, Patel SK, Graham DMA, Ahles TA, Root JC, Foroud T, Breen EC, et al. Genetic Variants Associated with Longitudinal Cognitive Performance in Older Breast Cancer Patients and Controls. Cancers. 15. PMID 37296840 DOI: 10.3390/cancers15112877  0.111
2018 Scoville SD, Nalin AP, Chen L, Chen L, Zhang M, McConnell K, Beceiro Casas S, Ernst G, Traboulsi AA, Hashi N, Williams M, Zhang X, Hughes T, Mishra A, Benson DM, et al. Human AML activates the AHR pathway to impair NK cell development and function. Blood. PMID 30158248 DOI: 10.1182/Blood-2018-03-838474  0.111
2022 Yan A, Xiong J, Zhu J, Li X, Xu S, Feng X, Ke X, Wang Z, Chen Y, Wang HW, Zhang MQ, Kee K. DAZL regulates proliferation of human primordial germ cells by direct binding to precursor miRNAs and enhances DICER processing activity. Nucleic Acids Research. PMID 36273819 DOI: 10.1093/nar/gkac856  0.111
2021 Wei L, Li S, Zhang P, Hu T, Zhang MQ, Xie Z, Wang X. Characterizing microRNA-mediated modulation of gene expression noise and its effect on synthetic gene circuits. Cell Reports. 36: 109573. PMID 34433047 DOI: 10.1016/j.celrep.2021.109573  0.109
2016 Shen X, Kan S, Hu J, Li M, Lu G, Zhang M, Zhang S, Hou Y, Chen Y, Bai Y. EMC6/TMEM93 suppresses glioblastoma proliferation by modulating autophagy. Cell Death & Disease. 7: e2043. PMID 26775697 DOI: 10.1038/cddis.2015.408  0.109
2022 Yuan Z, Li Y, Shi M, Yang F, Gao J, Yao J, Zhang MQ. SOTIP is a versatile method for microenvironment modeling with spatial omics data. Nature Communications. 13: 7330. PMID 36443314 DOI: 10.1038/s41467-022-34867-5  0.109
2022 Zhao Y, Huang F, Zou Z, Bi Y, Yang Y, Zhang C, Liu Q, Shang D, Yan Y, Ju X, Mei S, Xie P, Li X, Tian M, Tan S, ... ... Zhang MQ, et al. Avian influenza viruses suppress innate immunity by inducing trans-transcriptional readthrough via SSU72. Cellular & Molecular Immunology. PMID 35332300 DOI: 10.1038/s41423-022-00843-8  0.109
2016 Beal J, Cox RS, Grünberg R, McLaughlin J, Nguyen T, Bartley B, Bissell M, Choi K, Clancy K, Macklin C, Madsen C, Misirli G, Oberortner E, Pocock M, Roehner N, ... ... Zhang M, et al. Synthetic Biology Open Language (SBOL) Version 2.1.0. Journal of Integrative Bioinformatics. 13: 291. PMID 28187407 DOI: 10.2390/biecoll-jib-2016-291  0.108
2021 Shi M, You K, Chen T, Hou C, Liang Z, Liu M, Wang J, Wei T, Qin J, Chen Y, Zhang MQ, Li T. Quantifying the phase separation property of chromatin-associated proteins under physiological conditions using an anti-1,6-hexanediol index. Genome Biology. 22: 229. PMID 34404448 DOI: 10.1186/s13059-021-02456-2  0.104
2022 Zhang M, Wong SW, Wright JN, Wagner MW, Toescu S, Han M, Tam LT, Zhou Q, Ahmadian SS, Shpanskaya K, Lummus S, Lai H, Eghbal A, Radmanesh A, Nemelka J, et al. MRI Radiogenomics of Pediatric Medulloblastoma: A Multicenter Study. Radiology. 212137. PMID 35438562 DOI: 10.1148/radiol.212137  0.104
2019 Zhang M, Zundel Z, Myers CJ. SBOLExplorer: Data Infrastructure and Data Mining for Genetic Design Repositories. Acs Synthetic Biology. PMID 31532640 DOI: 10.1021/acssynbio.9b00089  0.1
2021 Yang G, Guan W, Cao Z, Guo W, Xiong G, Zhao F, Feng M, Qiu J, Liu Y, Zhang MQ, You L, Zhang T, Zhao Y, Gu J. Integrative genomic analysis of gemcitabine resistance in pancreatic cancer by patient-derived xenograft models. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 33674273 DOI: 10.1158/1078-0432.CCR-19-3975  0.1
2016 Roehner N, Beal J, Clancy K, Bartley B, Misirli G, Gruenberg R, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang M, Zhang Z, Zundel Z, Densmore D, et al. Sharing Structure and Function in Biological Design with SBOL 2.0. Acs Synthetic Biology. PMID 27111421 DOI: 10.1021/Acssynbio.5B00215  0.099
2017 Yang K, Wu J, Peretz-Soroka H, Zhu L, Li Z, Sang Y, Hipolito J, Zhang M, Santos S, Hillier C, de Faria RL, Liu Y, Lin F. Mkit: A cell migration assay based on microfluidic device and smartphone. Biosensors & Bioelectronics. 99: 259-267. PMID 28772229 DOI: 10.1016/J.Bios.2017.07.064  0.099
2015 Wang Y, Li Y, Gao J, Zhang MQ. A novel method to identify topological domains using Hi-C data Quantitative Biology. 3: 81-89. DOI: 10.1007/s40484-015-0047-9  0.098
2015 Scoville SD, Keller KA, Cheng S, Zhang M, Zhang X, Caligiuri MA, Freud AG. Rapid Column-Free Enrichment of Mononuclear Cells from Solid Tissues. Scientific Reports. 5: 12490. PMID 26223896 DOI: 10.1038/Srep12490  0.097
2016 Donius LR, Cheng Y, Choi J, Sun ZJ, Hanson M, Zhang M, Gierahn TM, Marquez S, Uduman M, Kleinstein SH, Irvine D, Love JC, Reinherz EL, Kim M. Generation of long-lived bone marrow plasma cells secreting antibodies specific for HIV-1 gp41 MPER in the absence of polyreactivity. Journal of Virology. PMID 27466419 DOI: 10.1128/Jvi.01089-16  0.097
2014 Su H, McKelvey J, Rollins D, Zhang M, Brightsmith DJ, Derr J, Zhang S. Cultivable bacterial microbiota of northern bobwhite (Colinus virginianus): a new reservoir of antimicrobial resistance? Plos One. 9: e99826. PMID 24937705 DOI: 10.1371/journal.pone.0099826  0.097
2017 Yang K, Wu J, Xu G, Xie D, Peretz-Soroka H, Santos S, Alexander M, Zhu L, Zhang M, Liu Y, Lin F. A dual-docking microfluidic cell migration assay (D(2)-Chip) for testing neutrophil chemotaxis and the memory effect. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 28367571 DOI: 10.1039/C7Ib00037E  0.095
2021 Yuan Z, Zhou Q, Cai L, Pan L, Sun W, Qumu S, Yu S, Feng J, Zhao H, Zheng Y, Shi M, Li S, Chen Y, Zhang X, Zhang MQ. SEAM is a spatial single nuclear metabolomics method for dissecting tissue microenvironment. Nature Methods. 18: 1223-1232. PMID 34608315 DOI: 10.1038/s41592-021-01276-3  0.094
2017 Yang K, Wu J, Zhu L, Liu Y, Zhang M, Lin F. An All-on-chip Method for Rapid Neutrophil Chemotaxis Analysis Directly from a Drop of Blood. Journal of Visualized Experiments : Jove. PMID 28671651 DOI: 10.3791/55615  0.092
2015 Feng M, Chen JY, Weissman-Tsukamoto R, Volkmer JP, Ho PY, McKenna KM, Cheshier S, Zhang M, Guo N, Gip P, Mitra SS, Weissman IL. Macrophages eat cancer cells using their own calreticulin as a guide: roles of TLR and Btk. Proceedings of the National Academy of Sciences of the United States of America. 112: 2145-50. PMID 25646432 DOI: 10.1073/Pnas.1424907112  0.09
2012 Li J, Zhu L, Zhang M, Lin F. Microfluidic device for studying cell migration in single or co-existing chemical gradients and electric fields. Biomicrofluidics. 6: 24121-2412113. PMID 22670168 DOI: 10.1063/1.4718721  0.088
2012 He M, Liu Y, Wang X, Zhang MQ, Hannon GJ, Huang ZJ. Cell-Type-Based Analysis of MicroRNA Profiles in the Mouse Brain Neuron. 75: 930-932. DOI: 10.1016/j.neuron.2012.08.018  0.088
2014 Wu J, Ouyang L, Wadhawan N, Li J, Zhang M, Liao S, Levin D, Lin F. A compact microfluidic system for cell migration studies. Biomedical Microdevices. 16: 521-8. PMID 24609918 DOI: 10.1007/S10544-014-9854-4  0.088
2017 Yang K, Peretz-Soroka H, Wu J, Zhu L, Cui X, Zhang M, Rigatto C, Liu Y, Lin F. Fibroblast growth factor 23 weakens chemotaxis of human blood neutrophils in microfluidic devices. Scientific Reports. 7: 3100. PMID 28596573 DOI: 10.1038/S41598-017-03210-0  0.088
2017 Myers CJ, Beal J, Gorochowski TE, Kuwahara H, Madsen C, McLaughlin JA, Mısırlı G, Nguyen T, Oberortner E, Samineni M, Wipat A, Zhang M, Zundel Z. A standard-enabled workflow for synthetic biology. Biochemical Society Transactions. 45: 793-803. PMID 28620041 DOI: 10.1042/BST20160347  0.087
2011 Zhang S, Corapi W, Quist E, Griffin S, Zhang M. Aspergillus versicolor, a new causative agent of canine disseminated aspergillosis. Journal of Clinical Microbiology. 50: 187-91. PMID 22031699 DOI: 10.1128/JCM.05388-11  0.086
2018 Sarver J, Zhang M, Liu L, Nyenhuis D, Cafiso DS. A Dynamic Protein-Protein Coupling Between the TonB-dependent Transporter FhuA and TonB. Biochemistry. PMID 29338257 DOI: 10.1021/Acs.Biochem.7B01223  0.084
2017 Dong M, Wu J, Ma Z, Peretz-Soroka H, Zhang M, Komenda P, Tangri N, Liu Y, Rigatto C, Lin F. Rapid and Low-Cost CRP Measurement by Integrating a Paper-Based Microfluidic Immunoassay with Smartphone (CRP-Chip). Sensors (Basel, Switzerland). 17. PMID 28346363 DOI: 10.3390/S17040684  0.083
2021 Norby FL, Tang W, Pankow JS, Lutsey PL, Alonso A, Steffan B, Chen LY, Zhang M, Shippee ND, Ballantyne CM, Boerwinkle E, Coresh J, Folsom AR. Proteomics and Risk of Atrial Fibrillation in Older Adults (From the Atherosclerosis Risk in Communities [ARIC] Study). The American Journal of Cardiology. 161: 42-50. PMID 34794617 DOI: 10.1016/j.amjcard.2021.08.064  0.082
2014 Kim MV, Ouyang W, Liao W, Zhang MQ, Li MO. Murine CD8 T Cell Killing Assay. Bio-Protocol. 4. PMID 29170744 DOI: 10.21769/BioProtoc.1172  0.082
2012 Wadhawan N, Kalkat H, Natarajan K, Ma X, Gajjeraman S, Nandagopal S, Hao N, Li J, Zhang M, Deng J, Xiang B, Mzengeza S, Freed DH, Arora RC, Tian G, et al. Growth and positioning of adipose-derived stem cells in microfluidic devices. Lab On a Chip. 12: 4829-34. PMID 23007449 DOI: 10.1039/C2Lc40891K  0.082
2023 Wang Y, Zhang Z, He H, Song J, Cui Y, Chen Y, Zhuang Y, Zhang X, Li M, Zhang X, Zhang MQ, Shi M, Yi C, Wang J. Aging-induced pseudouridine synthase 10 impairs hematopoietic stem cells. Haematologica. PMID 37165848 DOI: 10.3324/haematol.2022.282211  0.082
2019 Hutter G, Theruvath J, Graef CM, Zhang M, Schoen MK, Manz EM, Bennett ML, Olson A, Azad TD, Sinha R, Chan C, Assad Kahn S, Gholamin S, Wilson C, Grant G, et al. Microglia are effector cells of CD47-SIRPα antiphagocytic axis disruption against glioblastoma. Proceedings of the National Academy of Sciences of the United States of America. PMID 30602457 DOI: 10.1073/Pnas.1721434116  0.082
2017 Zhang M, McLaughlin JA, Wipat A, Myers CJ. SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design. Acs Synthetic Biology. PMID 28441476 DOI: 10.1021/acssynbio.6b00275  0.082
2011 Yan L, Zhang S, Pace L, Wilson F, Wan H, Zhang M. Combination of reverse transcription real-time polymerase chain reaction and antigen capture enzyme-linked immunosorbent assay for the detection of animals persistently infected with Bovine viral diarrhea virus. Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 23: 16-25. PMID 21217023 DOI: 10.1177/104063871102300103  0.08
2008 Zhang H, Li ZH, Zhang MQ, Katz MS, Zhang BX. Heat shock protein 90beta1 is essential for polyunsaturated fatty acid-induced mitochondrial Ca2+ efflux. The Journal of Biological Chemistry. 283: 7580-9. PMID 18178560 DOI: 10.1074/jbc.M707192200  0.077
2011 Connelly KA, Advani A, Kim S, Advani SL, Zhang M, White KE, Kim YM, Parker C, Thai K, Krum H, Kelly DJ, Gilbert RE. The cardiac (pro)renin receptor is primarily expressed in myocyte transverse tubules and is increased in experimental diabetic cardiomyopathy. Journal of Hypertension. 29: 1175-84. PMID 21505358 DOI: 10.1097/HJH.0b013e3283462674  0.077
2021 Zhang M, Zhou Q, Huang C, Chan CT, Wu W, Li G, Lim M, Gambhir SS, Daldrup-Link HE. In Vivo Evaluation of Near-Infrared Fluorescent Probe for TIM3 Targeting in Mouse Glioma. Molecular Imaging and Biology. PMID 34846678 DOI: 10.1007/s11307-021-01667-0  0.076
2014 Kim MV, Ouyang W, Liao W, Zhang MQ, Li MO. Murine In vitro Memory T Cell Differentiation. Bio-Protocol. 4. PMID 29104880 DOI: 10.21769/BioProtoc.1171  0.075
2021 Wu W, Klockow JL, Zhang M, Lafortune F, Chang E, Jin L, Wu Y, Daldrup-Link HE. Glioblastoma Multiforme (GBM): An overview of current therapies and mechanisms of resistance. Pharmacological Research. 105780. PMID 34302977 DOI: 10.1016/j.phrs.2021.105780  0.075
2018 Wu J, Tomsa D, Zhang M, Komenda P, Tangri N, Rigatto C, Lin F. A Passive Mixing Microfluidic Urinary Albumin Chip for Chronic Kidney Disease Assessment. Acs Sensors. PMID 30350581 DOI: 10.1021/Acssensors.8B01072  0.075
2015 Mitra SS, Feroze AH, Gholamin S, Richard C, Esparza R, Zhang M, Azad TD, Alrfaei B, Kahn SA, Hutter G, Guzman R, Creasey GH, Plant GW, Weissman IL, Edwards MS, et al. Neural Placode Tissue Derived From Myelomeningocele Repair Serves as a Viable Source of Oligodendrocyte Progenitor Cells. Neurosurgery. PMID 26225855 DOI: 10.1227/Neu.0000000000000918  0.075
2018 McLaughlin JA, Myers CJ, Zundel Z, Misirli G, Zhang M, Ofiteru ID, Goñi Moreno A, Wipat A. SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology. Acs Synthetic Biology. PMID 29316788 DOI: 10.1021/acssynbio.7b00403  0.075
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2019 Zhang M, Radford KD, Driscoll M, Purnomo S, Kim J, Choi KH. Effects of subanesthetic intravenous ketamine infusion on neuroplasticity-related proteins in the prefrontal cortex, amygdala, and hippocampus of Sprague-Dawley rats. Ibro Reports. 6: 87-94. PMID 30723838 DOI: 10.1016/j.ibror.2019.01.006  0.074
2023 Zhang M, Kim S, Lu PY, Soljacic M. Deep Learning and Symbolic Regression for Discovering Parametric Equations. Ieee Transactions On Neural Networks and Learning Systems. PMID 37721885 DOI: 10.1109/TNNLS.2023.3297978  0.073
2018 Cox RS, Madsen C, McLaughlin JA, Nguyen T, Roehner N, Bartley B, Beal J, Bissell M, Choi K, Clancy K, Grünberg R, Macklin C, Misirli G, Oberortner E, Pocock M, ... ... Zhang M, et al. Synthetic Biology Open Language (SBOL) Version 2.2.0. Journal of Integrative Bioinformatics. PMID 29605823 DOI: 10.1515/Jib-2018-0001  0.073
2020 Zhang M, Li R, Pollom EL, Amini A, Dandapani S, Li G. Treatment patterns and outcomes for cerebellar glioblastoma in the concomitant chemoradiation era: A National Cancer database study. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. 82: 122-127. PMID 33317719 DOI: 10.1016/j.jocn.2020.10.049  0.072
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2023 Wu Y, Niu X, Li P, Tong T, Wang Q, Zhang M, Li Y, Liu J, Li Z. Lactobacillaceae improve cognitive dysfunction via regulating gut microbiota and suppressing Aβ deposits and neuroinflammation in APP/PS1 mice. Archives of Microbiology. 205: 118. PMID 36928985 DOI: 10.1007/s00203-023-03466-3  0.07
2016 Asghar W, Yuksekkaya M, Shafiee H, Zhang M, Ozen MO, Inci F, Kocakulak M, Demirci U. Engineering long shelf life multi-layer biologically active surfaces on microfluidic devices for point of care applications. Scientific Reports. 6: 21163. PMID 26883474 DOI: 10.1038/Srep21163  0.07
2023 Li P, Tong T, Wu Y, Zhou X, Zhang M, Liu J, She Y, Li Z, Li A. The Synergism of Human and Inulin Decrease Hyperglycemia via Regulating the Composition of Gut Microbiota and Metabolic Profiles in db/db Mice. Journal of Microbiology and Biotechnology. 33: 1-14. PMID 37734909 DOI: 10.4014/jmb.2304.04039  0.069
2021 Zhang M, Mahavadi AK, Deftos ML, Ali A, Singh H. Endoscopic Endonasal Resection of Rathke Cleft Cyst with Xanthogranulomatous Change: Two-Dimensional Operative Video. Journal of Neurological Surgery. Part B, Skull Base. 83: e655-e656. PMID 36068899 DOI: 10.1055/s-0041-1727128  0.069
2021 Zhang M, Jin C, Nie Y, Ren Y, Hao N, Xu Z, Dong L, Zhang JXJ. Silver nanoparticle on zinc oxide array for label-free detection of opioids through surface-enhanced raman spectroscopy. Rsc Advances. 11: 11329-11337. PMID 35423637 DOI: 10.1039/d1ra00760b  0.069
2020 Ritzenthaler JD, Zhang M, Torres-Gonzalez E, Roman J. The Integrin Inhibitor Cilengitide and Bleomycin-Induced Pulmonary Fibrosis : Cilengitide and Bleomycin-Induced Pulmonary Fibrosis. Lung. PMID 33146772 DOI: 10.1007/s00408-020-00400-y  0.068
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2021 Kulikov A, Shipaeva E, Dmitrieva A, Batrak V, Shipunov G, Guy C, Smith J, Zhang R, Zhang M, Duan J, Chestukhin A, Barbashov S, Samsonov M, Lavrovsky Y. Preclinical Characterization of a Novel Anti-Cancer PD-L1 Inhibitor RPH-120. Frontiers in Pharmacology. 12: 723038. PMID 34456733 DOI: 10.3389/fphar.2021.723038  0.067
2013 Hao B, Zhang C, Li Y, Li H, Wei L, Kanehisa M, Lai L, Chen R, Rajewsky N, Zhang MQ, Han J, Jiang R, Zhang X. Advanced topics in bioinformatics and computational biology Basics of Bioinformatics: Lecture Notes of the Graduate Summer School On Bioinformatics of China. 369-395. DOI: 10.1007/978-3-642-38951-1_12  0.067
2021 Rodrigues A, Li G, Zhang M, Jin MC, Hayden-Gephart M. High-quality neurosurgeon communication and visualization during telemedicine encounters improves patient satisfaction. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. 94: 18-23. PMID 34863435 DOI: 10.1016/j.jocn.2021.09.013  0.067
2021 Zhang M. Estimation of differential occupational risk of COVID-19 by comparing risk factors with case data by occupational group. American Journal of Industrial Medicine. 64: 39-47. PMID 33210336 DOI: 10.1002/ajim.23199  0.066
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2021 Ye Z, Chen F, Zeng J, Gao J, Zhang MQ. ScaffComb: A Phenotype-Based Framework for Drug Combination Virtual Screening in Large-Scale Chemical Datasets. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2102092. PMID 34723439 DOI: 10.1002/advs.202102092  0.064
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2015 Shi Y, Xu X, Fang M, Zhang M, Li Y, Gillespie B, Yorke S, Yang N, McKew JC, Gahl WA, Huizing M, Carrillo-Carrasco N, Wang AQ. Quantitative hydrophilic interaction chromatography-mass spectrometry analysis of N-acetylneuraminic acid and N-acetylmannosamine in human plasma. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1000: 105-111. PMID 26218770 DOI: 10.1016/j.jchromb.2015.07.018  0.063
2012 Zhang M, Hedges DW, Brown BL. Global representation in psychiatric research. International Psychiatry : Bulletin of the Board of International Affairs of the Royal College of Psychiatrists. 9: 94-96. PMID 31508141  0.062
2018 Cecilia Söderhielm P, Balle T, Bak-Nyhus S, Zhang M, Hansen KM, Ahring PK, Jensen AA. Probing the molecular basis for affinity/potency- and efficacy-based subtype-selectivity exhibited by benzodiazepine-site modulators at GABA receptors. Biochemical Pharmacology. PMID 30121248 DOI: 10.1016/j.bcp.2018.08.019  0.062
2020 Hao N, Zhang M, Zhang JXJ. Microfluidics for ZnO micro-/nanomaterials development: rational design, controllable synthesis, and on-chip bioapplications. Biomaterials Science. PMID 31965125 DOI: 10.1039/c9bm01787a  0.06
2023 Huo W, Price VJ, Sharifi A, Zhang MQ, Palmer KL. Enterococcus faecalis Strains with Compromised CRISPR-Cas Defense Emerge under Antibiotic Selection for a CRISPR-Targeted Plasmid. Applied and Environmental Microbiology. e0012423. PMID 37278656 DOI: 10.1128/aem.00124-23  0.06
2019 He JQ, Iv M, Li G, Zhang M, Hayden-Gephart M. Non-Contrast T2-Weighted MR Sequences for Long Term Monitoring of Asymptomatic Convexity Meningiomas. World Neurosurgery. PMID 31734418 DOI: 10.1016/j.wneu.2019.11.051  0.06
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2008 Maulik U, Mukhopadhyay A, Bandyopadhyay S, Zhang MQ, Zhang X. Multiobjective fuzzy biclustering in microarray data: Method and a new performance measure 2008 Ieee Congress On Evolutionary Computation, Cec 2008. 1536-1543. DOI: 10.1109/CEC.2008.4630996  0.06
2019 Zhang M, Garcia A, Bretones G. Demographics and Clinical Profiles of Patients Visiting a Free Clinic in Miami, Florida. Frontiers in Public Health. 7: 212. PMID 31428596 DOI: 10.3389/fpubh.2019.00212  0.06
2019 Ren X, Wu J, Levin D, Santos S, de Faria RL, Zhang M, Lin F. Sputum from chronic obstructive pulmonary disease patients inhibits T cell migration in a microfluidic device. Annals of the New York Academy of Sciences. PMID 30891781 DOI: 10.1111/Nyas.14029  0.06
2017 Gholamin S, Mitra SS, Feroze AH, Liu J, Kahn SA, Zhang M, Esparza R, Richard C, Ramaswamy V, Remke M, Volkmer AK, Willingham S, Ponnuswami A, McCarty A, Lovelace P, et al. Disrupting the CD47-SIRPα anti-phagocytic axis by a humanized anti-CD47 antibody is an efficacious treatment for malignant pediatric brain tumors. Science Translational Medicine. 9. PMID 28298418 DOI: 10.1126/Scitranslmed.Aaf2968  0.06
2021 Zhang M, Rodrigues AJ, Pollom EL, Gibbs IC, Soltys SG, Hancock SL, Neal JW, Padda SK, Ramchandran KJ, Wakelee HA, Chang SD, Lim M, Hayden Gephart M, Li G. Improved survival and disease control following pembrolizumab-induced immune-related adverse events in high PD-L1 expressing non-small cell lung cancer with brain metastases. Journal of Neuro-Oncology. PMID 33415659 DOI: 10.1007/s11060-020-03686-3  0.059
2019 Hao N, Xu Z, Nie Y, Jin C, Closson AB, Zhang M, Zhang JXJ. Microfluidics-enabled rational design of ZnO micro-/nanoparticles with enhanced photocatalysis, cytotoxicity, and piezoelectric properties. Chemical Engineering Journal (Lausanne, Switzerland : 1996). 378. PMID 32831625 DOI: 10.1016/J.Cej.2019.122222  0.058
2020 Wang W, Norby FL, Rooney MR, Zhang M, Gutierrez A, Garg P, Soliman EZ, Alonso A, Dudley SC, Lutsey PL, Chen LY. Association of Life's Simple 7 with Atrial Fibrillation Burden (From the Atherosclerosis Risk in Communities [ARIC] Study). The American Journal of Cardiology. PMID 32998009 DOI: 10.1016/j.amjcard.2020.09.033  0.058
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2018 An J, Yang C, Li Z, Finn PW, Perkins DL, Sun J, Bai Z, Gao L, Zhang M, Ren D. In vitro antioxidant activities of Rhodobacter sphaeroides and protective effect on Caco-2 cell line model. Applied Microbiology and Biotechnology. PMID 30421110 DOI: 10.1007/s00253-018-9497-0  0.057
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2023 Luo Y, Hu Y, Yang J, Zhang M, Yung YL. Coupled atmospheric chemistry, radiation, and dynamics of an exoplanet generate self-sustained oscillations. Proceedings of the National Academy of Sciences of the United States of America. 120: e2309312120. PMID 38091286 DOI: 10.1073/pnas.2309312120  0.055
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2021 Zhang M, Zhou J, Dirlikov B, Cage T, Lee M, Singh H. Impact on neurosurgical management in Level 1 trauma centers during COVID-19 shelter-in-place restrictions: The Santa Clara County experience. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. 88: 128-134. PMID 33992171 DOI: 10.1016/j.jocn.2021.03.017  0.053
2020 Zhang M, Hayden Gephart M, Zygourakis CC. Commentary: Predicting Postoperative Outcomes in Brain Tumor Patients With a 5-Factor Modified Frailty Index. Neurosurgery. 88: E36-E38. PMID 32888308 DOI: 10.1093/neuros/nyaa407  0.053
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2015 Cole T, Veeravagu A, Zhang M, Azad T, Swinney C, Li GH, Ratliff JK, Giannotta SL. Retrosigmoid Versus Translabyrinthine Approach for Acoustic Neuroma Resection: An Assessment of Complications and Payments in a Longitudinal Administrative Database. Cureus. 7: e369. PMID 26623224 DOI: 10.7759/cureus.369  0.052
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2019 Mitrasinovic S, Zhang M, Appelboom G, Sussman E, Moore JM, Hancock SL, Adler JR, Kondziolka D, Steinberg GK, Chang SD. Milestones in stereotactic radiosurgery for the central nervous system. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. 59: 12-19. PMID 30595165 DOI: 10.1016/J.Jocn.2018.09.029  0.052
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2019 Dufort S, Appelboom G, Verry C, Barbier EL, Lux F, Bräuer-Krisch E, Sancey L, Chang SD, Zhang M, Roux S, Tillement O, Le Duc G. Ultrasmall theranostic gadolinium-based nanoparticles improve high-grade rat glioma survival. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. PMID 31281087 DOI: 10.1016/j.jocn.2019.05.065  0.049
2018 Zhang M, Azad TD, Singh H, Salam S, Jain S, Anand VK, Schwartz TH. Lumbar Puncture for the Injection of Intrathecal Fluorescein: Should It Be Avoided in a Subset of Patients Undergoing Endoscopic Endonasal Resection of Sellar and Parasellar Lesions? Journal of Neurological Surgery. Part B, Skull Base. 79: 554-558. PMID 30456024 DOI: 10.1055/s-0038-1635257  0.048
2019 Yang L, Shu C, Yang W, Wu J, Zhang M. Numerical investigation on performance of three solution reconstructions at cell interface in DVM simulation of flows in all Knudsen number regimes International Journal For Numerical Methods in Fluids. 90: 545-563. DOI: 10.1002/Fld.4734  0.048
2016 Zhang M, Hutter G, Kahn SA, Azad TD, Gholamin S, Xu CY, Liu J, Achrol AS, Richard C, Sommerkamp P, Schoen MK, McCracken MN, Majeti R, Weissman I, Mitra SS, et al. Anti-CD47 Treatment Stimulates Phagocytosis of Glioblastoma by M1 and M2 Polarized Macrophages and Promotes M1 Polarized Macrophages In Vivo. Plos One. 11: e0153550. PMID 27092773 DOI: 10.1371/Journal.Pone.0153550  0.048
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2017 Dalziel SR, Furyk J, Bonisch M, Oakley E, Borland M, Neutze J, Donath S, Sharpe C, Harvey S, Davidson A, Craig S, Phillips N, George S, Rao A, Cheng N, ... Zhang M, et al. A multicentre randomised controlled trial of levetiracetam versus phenytoin for convulsive status epilepticus in children (protocol): Convulsive Status Epilepticus Paediatric Trial (ConSEPT) - a PREDICT study. Bmc Pediatrics. 17: 152. PMID 28641582 DOI: 10.1186/s12887-017-0887-8  0.048
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2017 Cole T, Veeravagu A, Zhang M, Ratliff JK. Surgeon Procedure Volume and Complication Rates in Anterior Cervical Discectomy and Fusions: Analysis of a National Longitudinal Database. Clinical Spine Surgery. 30: E633-E639. PMID 28525490 DOI: 10.1097/BSD.0000000000000238  0.047
2011 Yang M, Lai SK, Wang YY, Zhong W, Happe C, Zhang M, Fu J, Hanes J. Biodegradable nanoparticles composed entirely of safe materials that rapidly penetrate human mucus. Angewandte Chemie (International Ed. in English). 50: 2597-600. PMID 21370345 DOI: 10.1002/Anie.201006849  0.047
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2021 Zhang M, Spencer HF, Berman RY, Radford KD, Choi KH. Effects of subanesthetic intravenous ketamine infusion on neuroplasticity-related proteins in male and female Sprague-Dawley rats. Ibro Neuroscience Reports. 11: 42-51. PMID 34286313 DOI: 10.1016/j.ibneur.2021.06.005  0.045
2018 Fatemi P, Zhang M, Miller KJ, Robe P, Li G. How Intraoperative Tools and Techniques Have Changed the Approach to Brain Tumor Surgery. Current Oncology Reports. 20: 89. PMID 30259202 DOI: 10.1007/S11912-018-0723-9  0.045
2015 Zhang M, Gale SD, Erickson LD, Brown BL, Woody P, Hedges DW. Cognitive function in older adults according to current socioeconomic status. Neuropsychology, Development, and Cognition. Section B, Aging, Neuropsychology and Cognition. 22: 534-43. PMID 25565407 DOI: 10.1080/13825585.2014.997663  0.045
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2021 Zhang M, Wang E, Yecies D, Tam LT, Han M, Toescu S, Wright JN, Altinmakas E, Chen E, Radmanesh A, Nemelka J, Oztekin O, Wagner MW, Lober RM, Ertl-Wagner B, et al. Radiomic Signatures of Posterior Fossa Ependymoma: Molecular Subgroups and Risk Profiles. Neuro-Oncology. PMID 34850171 DOI: 10.1093/neuonc/noab272  0.042
2015 Wu J, Hillier C, Komenda P, Lobato de Faria R, Levin D, Zhang M, Lin F. A Microfluidic Platform for Evaluating Neutrophil Chemotaxis Induced by Sputum from COPD Patients. Plos One. 10: e0126523. PMID 25961597 DOI: 10.1371/Journal.Pone.0126523  0.042
2010 Monick MM, Powers LS, Walters K, Lovan N, Zhang M, Gerke A, Hansdottir S, Hunninghake GW. Identification of an autophagy defect in smokers' alveolar macrophages. Journal of Immunology (Baltimore, Md. : 1950). 185: 5425-35. PMID 20921532 DOI: 10.4049/jimmunol.1001603  0.042
2022 Johansen MC, Wang W, Zhang M, Knopman DS, Ndumele C, Mosley TH, Selvin E, Shah AM, Solomon SD, Gottesman RF, Chen LY. Risk of Dementia Associated With Atrial Cardiopathy: The ARIC Study. Journal of the American Heart Association. 11: e025646. PMID 35946474 DOI: 10.1161/JAHA.121.025646  0.042
2018 O'Brien S, Borland ML, Cotterell E, Armstrong D, Babl F, Bauert P, Brabyn C, Garside L, Haskell L, Levitt D, McKay N, Neutze J, Schibler A, Sinn K, Spencer J, ... ... Zhang M, et al. Australasian bronchiolitis guideline. Journal of Paediatrics and Child Health. PMID 30009459 DOI: 10.1111/jpc.14104  0.041
2014 Zhao L, Yang M, Zhang M, Zhang S. Expression, purification, and in vitro comparative characterization of avian beta-defensin-2, -6, and -12. Avian Diseases. 58: 541-9. PMID 25618998  0.041
2017 Babl FE, Gardiner KK, Kochar A, Wilson CL, George SA, Zhang M, Furyk J, Thosar D, Cheek JA, Krieser D, Rao AS, Borland ML, Cheng N, Phillips NT, Sinn KK, et al. Bell's palsy in children: Current treatment patterns in Australia and New Zealand. A PREDICT study. Journal of Paediatrics and Child Health. PMID 28177168 DOI: 10.1111/jpc.13463  0.041
2020 Zhang M, Rodrigues AJ, Bhambhvani HP, Fatemi P, Pollom EL, Gibbs IC, Thomas RP, Soltys SG, Hancock SL, Chang SD, Reddy SA, Gephart MH, Li G. Intracranial Tumor Control Following Immune-Related Adverse Events and Discontinuation of Immunotherapy for Melanoma. World Neurosurgery. PMID 32853767 DOI: 10.1016/j.wneu.2020.08.124  0.041
2023 Asmaro K, Zhang M, Rodrigues AJ, Mohyeldin A, Vigo V, Nernekli K, Vogel H, Born DE, Katznelson L, Fernandez-Miranda JC. Cytodifferentiation of pituitary tumors influences pathogenesis and cavernous sinus invasion. Journal of Neurosurgery. 1-9. PMID 37119095 DOI: 10.3171/2023.3.JNS221949  0.04
2018 Zhang M, Jativa DF. Vitamin C supplementation in the critically ill: A systematic review and meta-analysis. Sage Open Medicine. 6: 2050312118807615. PMID 30364374 DOI: 10.1177/2050312118807615  0.04
2021 Zhang M, Tong E, Hamrick F, Lee EH, Tam LT, Pendleton C, Smith BW, Hug NF, Biswal S, Seekins J, Mattonen SA, Napel S, Campen CJ, Spinner RJ, Yeom KW, et al. Machine-Learning Approach to Differentiation of Benign and Malignant Peripheral Nerve Sheath Tumors: A Multicenter Study. Neurosurgery. PMID 34131749 DOI: 10.1093/neuros/nyab212  0.04
2023 Kempton EM, Zhang M, Bean JL, Steinrueck ME, Piette AAA, Parmentier V, Malsky I, Roman MT, Rauscher E, Gao P, Bell TJ, Xue Q, Taylor J, Savel AB, Arnold KE, et al. A reflective, metal-rich atmosphere for GJ 1214b from its JWST phase curve. Nature. PMID 37164036 DOI: 10.1038/s41586-023-06159-5  0.04
2023 Lai D, Kuo SI, Wetherill L, Aliev F, Zhang M, Marco A, Schwantes-An TH, Dick D, Francis MW, Johnson EC, Kamarajan C, Kinreich S, Kuperman S, Meyers J, Nurnberger JI, et al. Associations between alcohol use disorder polygenic score and remission in participants from high-risk families and Indiana biobank. Alcohol, Clinical & Experimental Research. PMID 38054532 DOI: 10.1111/acer.15239  0.039
2018 Bloom JB, Stern M, Patel NH, Zhang M, Phillips JL. Detection of lymph node metastases in penile cancer. Translational Andrology and Urology. 7: 879-886. PMID 30456191 DOI: 10.21037/tau.2018.08.01  0.039
2017 Du J, Zhang M, Guo Z, Chen J, Zhu X, Hu G, Peng P, Zheng Z, Zhang H. Phosphorene quantum dot saturable absorbers for ultrafast fiber lasers. Scientific Reports. 7: 42357. PMID 28211471 DOI: 10.1038/Srep42357  0.039
2014 Yang M, Lai SK, Yu T, Wang YY, Happe C, Zhong W, Zhang M, Anonuevo A, Fridley C, Hung A, Fu J, Hanes J. Nanoparticle penetration of human cervicovaginal mucus: the effect of polyvinyl alcohol. Journal of Controlled Release : Official Journal of the Controlled Release Society. 192: 202-8. PMID 25090196 DOI: 10.1016/J.Jconrel.2014.07.045  0.037
2021 Zhang M, Wong SW, Wright JN, Toescu S, Mohammadzadeh M, Han M, Lummus S, Wagner MW, Yecies D, Lai H, Eghbal A, Radmanesh A, Nemelka J, Harward S, Malinzak M, et al. Machine Assist for Pediatric Posterior Fossa Tumor Diagnosis: A Multinational Study. Neurosurgery. PMID 34392363 DOI: 10.1093/neuros/nyab311  0.037
2020 Zhang M, Thomas D, Salama G, Ahmed M. Single port robotic radical cystectomy with intracorporeal urinary diversion: a case series and review. Translational Andrology and Urology. 9: 925-930. PMID 32420208 DOI: 10.21037/tau.2020.01.19  0.037
2020 Kim J, Wang W, Norby FL, Zhang M, Alonso A, Lutsey PL, Soliman EZ, Wolfson J, Chen LY. Diurnal circadian variations in paroxysmal atrial fibrillation: The atherosclerosis risk in communities (ARIC) study. Journal of Electrocardiology. 63: 98-103. PMID 33171399 DOI: 10.1016/j.jelectrocard.2020.10.013  0.037
2021 Ibrahim LF, Tham D, Chong V, Corden M, Craig S, Buntine P, Jani S, Zhang M, George S, Kochar A, O'Brien S, Robins-Browne K, Tosif S, Daley A, McNab S, et al. The characteristics of SARS-CoV-2-positive children who presented to Australian hospitals during 2020: a PREDICT network study. The Medical Journal of Australia. PMID 34389995 DOI: 10.5694/mja2.51207  0.036
2019 Radford KD, Spencer HF, Zhang M, Berman RY, Girasek QL, Choi KH. Association between intravenous ketamine-induced stress hormone levels and long-term fear memory renewal in Sprague-Dawley rats. Behavioural Brain Research. 112259. PMID 31560919 DOI: 10.1016/j.bbr.2019.112259  0.036
2023 Babl FE, Eapen N, Herd D, Borland ML, Kochar A, Zhang M, Oakley E, Hopper SM, Berkowitz RG, Wilson CL, Williams A, Mackay MT, Lee KJ, Hearps S. Agreement of Clinician-Administered and Modified Parent-Administered House-Brackmann Scales in Children with Bell's Palsy. Oto Open. 7: e44. PMID 36998545 DOI: 10.1002/oto2.44  0.036
2019 Paul TK, Alamin AE, Subedi P, Zhang M, Diab MM, Alamian A, Wang L, Blackwell G, Mamudu HM. Association between cardiovascular risk factors and the diameter of the main pulmonary artery in asymptomatic population in the Appalachian region. Journal of Thoracic Disease. 11: 3435-3442. PMID 31559048 DOI: 10.21037/Jtd.2019.08.09  0.036
2020 Babu RO, Hang Lui VC, Chen Y, Wan Yiu RS, Ye Y, Niu B, Wu Z, Zhang R, Na Yu MO, Yu Chung PH, Yuen Wong KK, Xia H, Zhang MQ, Wang B, Lendahl U, et al. Beta-amyloid deposition around hepatic bile ducts is a novel pathobiological and diagnostic feature of biliary atresia. Journal of Hepatology. PMID 32553668 DOI: 10.1016/j.jhep.2020.06.012  0.036
2018 Veeravagu A, Azad TD, Zhang M, Li A, Pendharkar AV, Ratliff JK, Shuer LM. Outcomes of cervical laminoplasty-Population-level analysis of a national longitudinal database. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. 48: 66-70. PMID 29153782 DOI: 10.1016/j.jocn.2017.10.089  0.035
2018 Sussman ES, Madhugiri V, Teo M, Nielsen TH, Furtado SV, Pendharkar AV, Ho AL, Esparza R, Azad TD, Zhang M, Steinberg GK. Contralateral acute vascular occlusion following revascularization surgery for moyamoya disease. Journal of Neurosurgery. 1-7. PMID 30554188 DOI: 10.3171/2018.8.Jns18951  0.035
2020 Choi KH, Berman RY, Zhang M, Spencer HF, Radford KD. Effects of Ketamine on Rodent Fear Memory. International Journal of Molecular Sciences. 21. PMID 32998470 DOI: 10.3390/ijms21197173  0.035
2013 Zhang MQ, Tang C. QB: A new inter- and multi-disciplinary forum for modeling, engineering and understanding life Quantitative Biology. 1: 1-2. DOI: 10.1007/s40484-013-0001-7  0.035
2015 Zhang M, Alexander A, Most SP, Li G, Harris OA. Intracranial Dislocation of the Mandibular Condyle: A Case Report and Literature Review. World Neurosurgery. PMID 26365884 DOI: 10.1016/j.wneu.2015.09.007  0.034
2016 Teo M, Zhang M, Li A, Thompson PA, Tayag AT, Wallach J, Gibbs IC, Soltys SG, Hancock SL, Chang SD. The Outcome of Hypo-fractionated Stereotactic Radiosurgery for Large Vestibular Schwannomas. World Neurosurgery. PMID 27368508 DOI: 10.1016/j.wneu.2016.06.080  0.034
2015 Ho AL, Sussman ES, Zhang M, Pendharkar AV, Azagury DE, Bohon C, Halpern CH. Deep Brain Stimulation for Obesity. CurēUs. 7: e259. PMID 26180683 DOI: 10.7759/Cureus.259  0.034
2021 Zhang M, Murphy B, Cabanilla A, Yidi C. Physical relaxation for occupational stress in healthcare workers: A systematic review and network meta-analysis of randomized controlled trials. Journal of Occupational Health. 63: e12243. PMID 34235817 DOI: 10.1002/1348-9585.12243  0.034
2017 Babl FE, Mackay MT, Borland ML, Herd DW, Kochar A, Hort J, Rao A, Cheek JA, Furyk J, Barrow L, George S, Zhang M, Gardiner K, Lee KJ, Davidson A, et al. Bell's Palsy in Children (BellPIC): protocol for a multicentre, placebo-controlled randomized trial. Bmc Pediatrics. 17: 53. PMID 28193257 DOI: 10.1186/s12887-016-0702-y  0.034
2016 Zhang M, Singh H, Almodovar-Mercado GJ, Anand VK, Schwartz TH. Required Reading: The most impactful articles in endoscopic endonasal skull base surgery. World Neurosurgery. PMID 27312387 DOI: 10.1016/j.wneu.2016.06.016  0.033
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