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Jared Winkelman - Publications

Affiliations: 
Rutgers University, New Brunswick, New Brunswick, NJ, United States 
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14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Pukhrambam C, Molodtsov V, Kooshkbaghi M, Tareen A, Vu H, Skalenko KS, Su M, Yin Z, Winkelman JT, Kinney JB, Ebright RH, Nickels BE. Structural and mechanistic basis of σ-dependent transcriptional pausing. Proceedings of the National Academy of Sciences of the United States of America. 119: e2201301119. PMID 35653571 DOI: 10.1073/pnas.2201301119  0.699
2022 Liu Y, Yu L, Pukhrambam C, Winkelman JT, Firlar E, Kaelber JT, Zhang Y, Nickels BE, Ebright RH. Structural and mechanistic basis of reiterative transcription initiation. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35082149 DOI: 10.1073/pnas.2115746119  0.719
2021 Skalenko KS, Li L, Zhang Y, Vvedenskaya IO, Winkelman JT, Cope AL, Taylor DM, Shah P, Ebright RH, Kinney JB, Zhang Y, Nickels BE. Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34187896 DOI: 10.1073/pnas.2106388118  0.753
2020 Winkelman JT, Pukhrambam C, Vvedenskaya IO, Zhang Y, Taylor DM, Shah P, Ebright RH, Nickels BE. XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing. Molecular Cell. PMID 32750314 DOI: 10.1016/J.Molcel.2020.07.006  0.741
2020 Chen J, Chiu C, Gopalkrishnan S, Chen AY, Olinares PDB, Saecker RM, Winkelman JT, Maloney MF, Chait BT, Ross W, Gourse RL, Campbell EA, Darst SA. Stepwise Promoter Melting by Bacterial RNA Polymerase. Molecular Cell. PMID 32160514 DOI: 10.1016/J.Molcel.2020.02.017  0.64
2017 Yu L, Winkelman J, Pukhrambam C, Strick T, Nickels BE, Ebright RH. The mechanism of variability in transcription start site selection. Elife. 6. PMID 29168694 DOI: 10.7554/Elife.32038  0.735
2017 Chen J, Wassarman KM, Feng S, Leon K, Feklistov A, Winkelman JT, Li Z, Walz T, Campbell EA, Darst SA. 6S RNA Mimics B-Form DNA to Regulate Escherichia coli RNA Polymerase. Molecular Cell. PMID 28988932 DOI: 10.1016/J.Molcel.2017.09.006  0.592
2017 Winkelman JT, Gourse RL. Open complex DNA scrunching: A key to transcription start site selection and promoter escape. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28052345 DOI: 10.1002/Bies.201600193  0.597
2016 Winkelman JT, Chandrangsu P, Ross W, Gourse RL. Open complex scrunching before nucleotide addition accounts for the unusual transcription start site of E. coli ribosomal RNA promoters. Proceedings of the National Academy of Sciences of the United States of America. PMID 26976590 DOI: 10.1073/Pnas.1522159113  0.65
2016 Winkelman JT, Vvedenskaya IO, Zhang Y, Zhang Y, Bird JG, Taylor DM, Gourse RL, Ebright RH, Nickels BE. Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection. Science (New York, N.Y.). 351: 1090-3. PMID 26941320 DOI: 10.1126/Science.Aad6881  0.688
2015 Yang Y, Darbari VC, Zhang N, Lu D, Glyde R, Wang YP, Winkelman JT, Gourse RL, Murakami KS, Buck M, Zhang X. TRANSCRIPTION. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies. Science (New York, N.Y.). 349: 882-5. PMID 26293966 DOI: 10.1126/Science.Aab1478  0.476
2015 Winkelman JT, Winkelman BT, Boyce J, Maloney MF, Chen AY, Ross W, Gourse RL. Crosslink Mapping at Amino Acid-Base Resolution Reveals the Path of Scrunched DNA in Initial Transcribing Complexes. Molecular Cell. 59: 768-80. PMID 26257284 DOI: 10.1016/J.Molcel.2015.06.037  0.64
2015 Yang Y, Darbari VC, Zhang N, Lu D, Glyde R, Wang YP, Winkelman JT, Gourse RL, Murakami KS, Buck M, Zhang X. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies Science. 349: 882-885. DOI: 10.1126/science.aab1478  0.46
2013 Winkelman JT, Bree AC, Bate AR, Eichenberger P, Gourse RL, Kearns DB. RemA is a DNA-binding protein that activates biofilm matrix gene expression in Bacillus subtilis. Molecular Microbiology. 88: 984-97. PMID 23646920 DOI: 10.1111/Mmi.12235  0.393
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