Steffen Heber - Publications

Affiliations: 
Computer Science North Carolina State University, Raleigh, NC 

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Villarino GH, Hu Q, Manrique S, Flores-Vergara MA, Sehra B, Robles L, Brumos J, Stepanova AN, Colombo L, Sundberg E, Heber S, Franks RG. Temporal and spatial domain-specific transcriptomic analysis of a vital reproductive meristem in Arabidopsis thaliana. Plant Physiology. PMID 26983993 DOI: 10.1104/Pp.15.01845  0.48
2015 Merchante C, Brumos J, Yun J, Hu Q, Spencer KR, Enríquez P, Binder BM, Heber S, Stepanova AN, Alonso JM. Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2. Cell. 163: 684-97. PMID 26496608 DOI: 10.1016/J.Cell.2015.09.036  0.48
2014 Schreiner D, Nguyen TM, Russo G, Heber S, Patrignani A, Ahrné E, Scheiffele P. Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins. Neuron. 84: 386-98. PMID 25284007 DOI: 10.1016/J.Neuron.2014.09.011  0.48
2013 Howard BE, Hu Q, Babaoglu AC, Chandra M, Borghi M, Tan X, He L, Winter-Sederoff H, Gassmann W, Veronese P, Heber S. High-throughput RNA sequencing of pseudomonas-infected Arabidopsis reveals hidden transcriptome complexity and novel splice variants. Plos One. 8: e74183. PMID 24098335 DOI: 10.1371/Journal.Pone.0074183  0.48
2011 Howard BE, Veronese P, Heber S. Improved RNA-Seq partitions in linear models for isoform quantification Proceedings - 2011 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2011. 151-154. DOI: 10.1109/BIBM.2011.102  0.48
2011 Heber S, Mayr R, Stoye J. Common intervals of multiple permutations Algorithmica (New York). 60: 175-206. DOI: 10.1007/S00453-009-9332-1  0.48
2010 Howard BE, Heber S. Towards reliable isoform quantification using RNA-SEQ data. Bmc Bioinformatics. 11: S6. PMID 20438653 DOI: 10.1186/1471-2105-11-S3-S6  0.48
2010 Chang KY, Georgianna DR, Heber S, Payne GA, Muddiman DC. Detection of alternative splice variants at the proteome level in Aspergillus flavus. Journal of Proteome Research. 9: 1209-17. PMID 20047314 DOI: 10.1021/Pr900602D  0.48
2010 Shi R, Sun YH, Li Q, Heber S, Sederoff R, Chiang VL. Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes. Plant & Cell Physiology. 51: 144-63. PMID 19996151 DOI: 10.1093/Pcp/Pcp175  0.48
2009 Howard BE, Sick B, Heber S. Unsupervised assessment of microarray data quality using a Gaussian mixture model. Bmc Bioinformatics. 10: 191. PMID 19545436 DOI: 10.1186/1471-2105-10-191  0.48
2009 Wang T, Furey TS, Connelly JJ, Ji S, Nelson S, Heber S, Gregory SG, Hauser ER. A general integrative genomic feature transcription factor binding site prediction method applied to analysis of USF1 binding in cardiovascular disease. Human Genomics. 3: 221-35. PMID 19403457 DOI: 10.1186/1479-7364-3-3-221  0.48
2009 Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ. The deep evolution of metazoan microRNAs. Evolution & Development. 11: 50-68. PMID 19196333 DOI: 10.1111/J.1525-142X.2008.00302.X  0.48
2009 Howard BE, Sick B, Heber S. Practical quality assessment of microarray data by simulation of differential gene expression Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5542: 18-27. DOI: 10.1007/978-3-642-01551-9_3  0.48
2009 Kim J, Zhao S, Howard BE, Heber S. Mining of cis-regulatory motifs associated with tissue-specific alternative splicing Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5542: 260-271. DOI: 10.1007/978-3-642-01551-9_26  0.48
2007 Zhi D, Keich U, Pevzner P, Heber S, Tang H. Correcting base-assignment errors in repeat regions of shotgun assembly. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 4: 54-64. PMID 17277413 DOI: 10.1109/Tcbb.2007.1005  0.48
2007 Howard BE, Sick B, Perera I, Yang JI, Winter-Sederoff H, Heber S. Quality assessment of Affymetrix GeneChip data using the EM algorithm and a naïve Bayes classifier Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 145-150. DOI: 10.1109/BIBE.2007.4375557  0.48
2006 Frahm JL, Howard BE, Heber S, Muddiman DC. Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry. Journal of Mass Spectrometry : Jms. 41: 281-8. PMID 16538648 DOI: 10.1002/Jms.1024  0.48
2005 Heber S, Savage CD. Common intervals of trees Information Processing Letters. 93: 69-74. DOI: 10.1016/J.Ipl.2004.09.016  0.48
2004 Leipzig J, Pevzner P, Heber S. The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome. Nucleic Acids Research. 32: 3977-83. PMID 15292448 DOI: 10.1093/Nar/Gkh731  0.36
2003 Heber S, Stoye J. The European conference on computational biology. Drug Discovery Today. 8: 113-4. PMID 12568779 DOI: 10.1016/S1359-6446(02)02587-4  0.48
2002 Bergeron A, Heber S, Stoye J. Common intervals and sorting by reversals: A marriage of necessity Bioinformatics. 18: S54-S63. PMID 12385983  0.48
2002 Heber S, Alekseyev M, Sze SH, Tang H, Pevzner PA. Splicing graphs and EST assembly problem. Bioinformatics (Oxford, England). 18: S181-8. PMID 12169546  0.48
2001 Heber S, Stoye J. Algorithms for finding gene clusters Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2149: 252-263. DOI: 10.1007/3-540-44696-6_20  0.48
2001 Heber S, Stoye J. Finding all common intervals of k permutations Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2089: 207-218.  0.48
2000 Heber S, Stoye J, Frohme M, Hoheisel J, Vingron M. Contig selection in physical mapping Journal of Computational Biology. 7: 395-408. PMID 11108470 DOI: 10.1089/106652700750050853  0.48
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