| Year |
Citation |
Score |
| 2019 |
Wimberley CE, Heber S. PeakPass: Automating ChIP-Seq Blacklist Creation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 31855064 DOI: 10.1089/Cmb.2019.0295 |
0.422 |
|
| 2019 |
Perkins P, Mazzoni-Putman S, Stepanova A, Alonso J, Heber S. RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data. Bmc Genomics. 20: 422. PMID 31167636 DOI: 10.1186/S12864-019-5700-7 |
0.324 |
|
| 2016 |
Villarino GH, Hu Q, Manrique S, Flores-Vergara MA, Sehra B, Robles L, Brumos J, Stepanova AN, Colombo L, Sundberg E, Heber S, Franks RG. Temporal and spatial domain-specific transcriptomic analysis of a vital reproductive meristem in Arabidopsis thaliana. Plant Physiology. PMID 26983993 DOI: 10.1104/Pp.15.01845 |
0.382 |
|
| 2016 |
Hu Q, Merchante C, Stepanova A, Alonso J, Heber S. Genome-wide Search for Translated Upstream Open Reading Frames in Arabidopsis thaliana. Ieee Transactions On Nanobioscience. PMID 26886998 DOI: 10.1109/Tnb.2016.2516950 |
0.473 |
|
| 2015 |
Merchante C, Brumos J, Yun J, Hu Q, Spencer KR, Enríquez P, Binder BM, Heber S, Stepanova AN, Alonso JM. Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2. Cell. 163: 684-97. PMID 26496608 DOI: 10.1016/J.Cell.2015.09.036 |
0.389 |
|
| 2014 |
Schreiner D, Nguyen TM, Russo G, Heber S, Patrignani A, Ahrné E, Scheiffele P. Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins. Neuron. 84: 386-98. PMID 25284007 DOI: 10.1016/J.Neuron.2014.09.011 |
0.318 |
|
| 2013 |
Howard BE, Hu Q, Babaoglu AC, Chandra M, Borghi M, Tan X, He L, Winter-Sederoff H, Gassmann W, Veronese P, Heber S. High-throughput RNA sequencing of pseudomonas-infected Arabidopsis reveals hidden transcriptome complexity and novel splice variants. Plos One. 8: e74183. PMID 24098335 DOI: 10.1371/Journal.Pone.0074183 |
0.476 |
|
| 2010 |
Howard BE, Heber S. Towards reliable isoform quantification using RNA-SEQ data. Bmc Bioinformatics. 11: S6. PMID 20438653 DOI: 10.1186/1471-2105-11-S3-S6 |
0.395 |
|
| 2010 |
Chang KY, Georgianna DR, Heber S, Payne GA, Muddiman DC. Detection of alternative splice variants at the proteome level in Aspergillus flavus. Journal of Proteome Research. 9: 1209-17. PMID 20047314 DOI: 10.1021/Pr900602D |
0.384 |
|
| 2010 |
Shi R, Sun YH, Li Q, Heber S, Sederoff R, Chiang VL. Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes. Plant & Cell Physiology. 51: 144-63. PMID 19996151 DOI: 10.1093/Pcp/Pcp175 |
0.464 |
|
| 2009 |
Howard BE, Sick B, Heber S. Unsupervised assessment of microarray data quality using a Gaussian mixture model. Bmc Bioinformatics. 10: 191. PMID 19545436 DOI: 10.1186/1471-2105-10-191 |
0.302 |
|
| 2009 |
Wang T, Furey TS, Connelly JJ, Ji S, Nelson S, Heber S, Gregory SG, Hauser ER. A general integrative genomic feature transcription factor binding site prediction method applied to analysis of USF1 binding in cardiovascular disease. Human Genomics. 3: 221-35. PMID 19403457 DOI: 10.1186/1479-7364-3-3-221 |
0.395 |
|
| 2007 |
Zhi D, Keich U, Pevzner P, Heber S, Tang H. Correcting base-assignment errors in repeat regions of shotgun assembly. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 4: 54-64. PMID 17277413 DOI: 10.1109/Tcbb.2007.1005 |
0.604 |
|
| 2006 |
Heber S, Sick B. Quality assessment of Affymetrix GeneChip data. Omics : a Journal of Integrative Biology. 10: 358-68. PMID 17069513 DOI: 10.1089/Omi.2006.10.358 |
0.303 |
|
| 2005 |
Psarros M, Heber S, Sick M, Thoppae G, Harshman K, Sick B. RACE: Remote Analysis Computation for gene Expression data. Nucleic Acids Research. 33: W638-43. PMID 15980552 DOI: 10.1093/Nar/Gki490 |
0.378 |
|
| 2004 |
Leipzig J, Pevzner P, Heber S. The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome. Nucleic Acids Research. 32: 3977-83. PMID 15292448 DOI: 10.1093/Nar/Gkh731 |
0.66 |
|
| 2002 |
Heber S, Alekseyev M, Sze SH, Tang H, Pevzner PA. Splicing graphs and EST assembly problem. Bioinformatics (Oxford, England). 18: S181-8. PMID 12169546 |
0.662 |
|
| 2001 |
Heber S, Stoye J. Algorithms for finding gene clusters Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2149: 252-263. DOI: 10.1007/3-540-44696-6_20 |
0.31 |
|
| 2000 |
Heber S, Stoye J, Frohme M, Hoheisel J, Vingron M. Contig selection in physical mapping Journal of Computational Biology. 7: 395-408. PMID 11108470 DOI: 10.1089/106652700750050853 |
0.481 |
|
| 2000 |
Heber S, Hoheisel J, Vingron M. Application of bootstrap techniques to physical mapping. Genomics. 69: 235-241. PMID 11031106 DOI: 10.1006/Geno.2000.6325 |
0.529 |
|
| 2000 |
Frohme M, Camargo AA, Heber S, Czink C, Simpson AJD, Hoheisel JD, Souza APd. Mapping analysis of the Xylella fastidiosa genome. Nucleic Acids Research. 28: 3100-3104. PMID 10931925 DOI: 10.1093/Nar/28.16.3100 |
0.392 |
|
| 2000 |
Wambutt R, Murphy G, Volckaert G, Pohl T, Düsterhöft A, Stiekema W, Entian K-, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, Simone Vd, ... ... Heber S, et al. Progress in Arabidopsis genome sequencing and functional genomics Journal of Biotechnology. 78: 281-292. PMID 10751689 DOI: 10.1016/S0168-1656(00)00195-4 |
0.449 |
|
| 1999 |
Mayer K, Schüller C, Wambutt R, Murphy G, Volckaert G, Pohl T, Düsterhöft A, Stiekema W, Entian KD, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, ... ... Heber S, et al. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature. 402: 769-77. PMID 10617198 DOI: 10.1038/47134 |
0.438 |
|
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