Yi Zhang - Publications

Affiliations: 
Genetics/PCMM Harvard Medical School - Boston Children's Hospital 

214 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Chen R, Liu Y, Djekidel MN, Chen W, Bhattacherjee A, Chen Z, Scolnick E, Zhang Y. Cell type-specific mechanism of Setd1a heterozygosity in schizophrenia pathogenesis. Science Advances. 8: eabm1077. PMID 35245111 DOI: 10.1126/sciadv.abm1077  0.763
2022 Zhang C, Wang M, Li Y, Zhang Y. Profiling and functional characterization of maternal mRNA translation during mouse maternal-to-zygotic transition. Science Advances. 8: eabj3967. PMID 35108058 DOI: 10.1126/sciadv.abj3967  0.339
2021 Wang Y, Wang M, Djekidel MN, Chen H, Liu D, Alt FW, Zhang Y. eccDNAs are apoptotic products with high innate immunostimulatory activity. Nature. 599: 308-314. PMID 34671165 DOI: 10.1038/s41586-021-04009-w  0.739
2021 Chen R, Blosser TR, Djekidel MN, Hao J, Bhattacherjee A, Chen W, Tuesta LM, Zhuang X, Zhang Y. Decoding molecular and cellular heterogeneity of mouse nucleus accumbens. Nature Neuroscience. 24: 1757-1771. PMID 34663959 DOI: 10.1038/s41593-021-00938-x  0.758
2021 Chen Z, Djekidel MN, Zhang Y. Author Correction: Distinct dynamics and functions of H2AK119ub1 and H3K27me3 in mouse preimplantation embryos. Nature Genetics. PMID 33888911 DOI: 10.1038/s41588-021-00871-6  0.727
2021 Chen Z, Djekidel MN, Zhang Y. Distinct dynamics and functions of H2AK119ub1 and H3K27me3 in mouse preimplantation embryos. Nature Genetics. PMID 33821005 DOI: 10.1038/s41588-021-00821-2  0.77
2021 He X, Zhu B, Xie W, He Y, Song J, Zhang Y, Sun C, Li H, Tang Q, Sun X, Tan Y, Liu Y. Amelioration of imiquimod-induced psoriasis-like dermatitis in mice by DSW therapy inspired hydrogel. Bioactive Materials. 6: 299-311. PMID 32954049 DOI: 10.1016/j.bioactmat.2020.08.007  0.344
2020 Fu X, Zhang C, Zhang Y. Epigenetic regulation of mouse preimplantation embryo development. Current Opinion in Genetics & Development. 64: 13-20. PMID 32563750 DOI: 10.1016/J.Gde.2020.05.015  0.416
2020 Fu X, Djekidel MN, Zhang Y. A transcriptional roadmap for 2C-like-to-pluripotent state transition. Science Advances. 6: eaay5181. PMID 32523982 DOI: 10.1126/Sciadv.Aay5181  0.752
2020 Chen Z, Zhang Y. Maternal H3K27me3-dependent autosomal and X chromosome imprinting. Nature Reviews. Genetics. PMID 32514155 DOI: 10.1038/S41576-020-0245-9  0.371
2020 McGlynn KA, Sun R, Vonica A, Rudzinskas S, Zhang Y, Perkins AS. Prdm3 and Prdm16 cooperatively maintain hematopoiesis and clonogenic potential. Experimental Hematology. PMID 32437910 DOI: 10.1016/J.Exphem.2020.04.010  0.322
2020 Zhang Y, Zhang M, Lin M, Gephart MH, Veeravagu A, Ratliff JK, Li G. Costs and Complications Associated with Resection of Supratentorial Tumors with and without the Operative Microscope in the United States. World Neurosurgery. PMID 32171932 DOI: 10.1016/j.wneu.2020.03.021  0.318
2020 Zhang C, Chen Z, Yin Q, Fu X, Li Y, Stopka T, Skoultchi AI, Zhang Y. The chromatin remodeler Snf2h is essential for oocyte meiotic cell cycle progression. Genes & Development. PMID 31919188 DOI: 10.1101/Gad.331157.119  0.409
2019 Chen Z, Yin Q, Inoue A, Zhang C, Zhang Y. Allelic H3K27me3 to allelic DNA methylation switch maintains noncanonical imprinting in extraembryonic cells. Science Advances. 5: eaay7246. PMID 32064321 DOI: 10.1126/Sciadv.Aay7246  0.396
2019 Zhang M, Zhang Y, Zheng E, Gephart MH, Veeravagu A, Desai A, Ratliff JK, Li G. Outcomes and costs following Ommaya placement with thrombocytopenia among US cancer patients. World Neurosurgery. PMID 31866457 DOI: 10.1016/j.wneu.2019.12.063  0.321
2019 Chen Z, Zhang Y. Role of Mammalian DNA Methyltransferases in Development. Annual Review of Biochemistry. PMID 31815535 DOI: 10.1146/Annurev-Biochem-103019-102815  0.355
2019 Bhattacherjee A, Djekidel MN, Chen R, Chen W, Tuesta LM, Zhang Y. Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction. Nature Communications. 10: 4169. PMID 31519873 DOI: 10.1038/S41467-019-12054-3  0.764
2019 Lu X, Chu CS, Fang T, Rayon-Estrada V, Fang F, Patke A, Qian Y, Clarke SH, Melnick AM, Zhang Y, Papavasiliou FN, Roeder RG. MTA2/NuRD Regulates B Cell Development and Cooperates with OCA-B in Controlling the Pre-B to Immature B Cell Transition. Cell Reports. 28: 472-485.e5. PMID 31291582 DOI: 10.1016/J.Celrep.2019.06.029  0.471
2019 Fu X, Wu X, Djekidel MN, Zhang Y. Myc and Dnmt1 impede the pluripotent to totipotent state transition in embryonic stem cells. Nature Cell Biology. PMID 31209294 DOI: 10.1038/S41556-019-0343-0  0.775
2019 Tuesta LM, Djekidel MN, Chen R, Lu F, Wang W, Sabatini BL, Zhang Y. In vivo nuclear capture and molecular profiling identifies Gmeb1 as a transcriptional regulator essential for dopamine neuron function. Nature Communications. 10: 2508. PMID 31175277 DOI: 10.1038/S41467-019-10267-0  0.743
2019 Wen X, Zhu B, Zhang Y, Mei F, Cheng X, Qian C, Yang P, Lu L, Zhou D, Gao J, Bu L, Qu S. Alterations in Fat Mass and Bone Mineral Density Are Associated with Decreased Lipocalin-2 After Laparoscopic Sleeve Gastrectomy in Obese Chinese Women. Obesity Surgery. PMID 31147821 DOI: 10.1007/s11695-019-03914-4  0.305
2019 Chen Z, Zhang Y. Loss of DUX causes minor defects in zygotic genome activation and is compatible with mouse development. Nature Genetics. 51: 947-951. PMID 31133747 DOI: 10.1038/S41588-019-0418-7  0.399
2019 Zhang Y, Jang Y, Lee JE, Ahn J, Xu L, Holden MR, Cornett EM, Krajewski K, Klein BJ, Wang SP, Dou Y, Roeder RG, Strahl BD, Rothbart SB, Shi X, et al. Selective binding of the PHD6 finger of MLL4 to histone H4K16ac links MLL4 and MOF. Nature Communications. 10: 2314. PMID 31127101 DOI: 10.1038/S41467-019-10324-8  0.461
2019 Zhang W, Chen Z, Yin Q, Zhang D, Racowsky C, Zhang Y. Maternal-biased H3K27me3 correlates with paternal-specific gene expression in the human morula. Genes & Development. PMID 30808660 DOI: 10.1101/Gad.323105.118  0.372
2018 Inoue A, Chen Z, Yin Q, Zhang Y. Maternal knockout causes loss of H3K27me3 imprinting and random X inactivation in the extraembryonic cells. Genes & Development. PMID 30463900 DOI: 10.1101/Gad.318675.118  0.369
2018 Kim H, Kim D, Choi SA, Kim CR, Oh SK, Pyo KE, Kim J, Lee SH, Yoon JB, Zhang Y, Baek SH. KDM3A histone demethylase functions as an essential factor for activation of JAK2-STAT3 signaling pathway. Proceedings of the National Academy of Sciences of the United States of America. PMID 30377265 DOI: 10.1073/Pnas.1805662115  0.31
2018 Ayoub E, Wilson MP, McGrath KE, Li AJ, Frisch BJ, Palis J, Calvi LM, Zhang Y, Perkins AS. EVI1 overexpression reprograms hematopoiesis via upregulation of Spi1 transcription. Nature Communications. 9: 4239. PMID 30315161 DOI: 10.1038/S41467-018-06208-Y  0.324
2018 Wang Y, Zhou P, Qin S, Xu D, Liu Y, Fu W, Ruan B, Zhang L, Zhang Y, Wang X, Pan Y, Wang S, Yan H, Qin J, Wang X, et al. The Curcumin Analogs 2-Pyridyl Cyclohexanone Induce Apoptosis via Inhibition of the JAK2-STAT3 Pathway in Human Esophageal Squamous Cell Carcinoma Cells. Frontiers in Pharmacology. 9: 820. PMID 30186159 DOI: 10.3389/Fphar.2018.00820  0.339
2018 Matoba S, Zhang Y. Somatic Cell Nuclear Transfer Reprogramming: Mechanisms and Applications. Cell Stem Cell. PMID 30033121 DOI: 10.1016/J.Stem.2018.06.018  0.325
2018 Matoba S, Wang H, Jiang L, Lu F, Iwabuchi KA, Wu X, Inoue K, Yang L, Press W, Lee JT, Ogura A, Shen L, Zhang Y. Loss of H3K27me3 Imprinting in Somatic Cell Nuclear Transfer Embryos Disrupts Post-Implantation Development. Cell Stem Cell. PMID 30033120 DOI: 10.1016/J.Stem.2018.06.008  0.715
2018 Djekidel MN, Inoue A, Matoba S, Suzuki T, Zhang C, Lu F, Jiang L, Zhang Y. Reprogramming of Chromatin Accessibility in Somatic Cell Nuclear Transfer Is DNA Replication Independent. Cell Reports. 23: 1939-1947. PMID 29768195 DOI: 10.1016/J.Celrep.2018.04.036  0.786
2017 Inoue A, Jiang L, Lu F, Zhang Y. Genomic imprinting of Xist by maternal H3K27me3. Genes & Development. 31: 1927-1932. PMID 29089420 DOI: 10.1101/Gad.304113.117  0.685
2017 Zhang J, Geng Y, Guo F, Zhang F, Liu M, Song L, Ma Y, Li D, Zhang Y, Xu H, Yang H. Screening and identification of critical transcription factors involved in the protection of cardiomyocytes against hydrogen peroxide-induced damage by Yixin-shu. Scientific Reports. 7: 13867. PMID 29066842 DOI: 10.1038/S41598-017-10131-5  0.305
2017 Lee CC, Peng SH, Shen L, Lee CF, Du TH, Kang ML, Xu GL, Upadhyay AK, Cheng X, Yan YT, Zhang Y, Juan LJ. The Role of N-α-acetyltransferase 10 Protein in DNA Methylation and Genomic Imprinting. Molecular Cell. PMID 28943313 DOI: 10.1016/J.Molcel.2017.08.025  0.36
2017 Inoue A, Jiang L, Lu F, Suzuki T, Zhang Y. Maternal H3K27me3 controls DNA methylation-independent imprinting. Nature. PMID 28723896 DOI: 10.1038/Nature23262  0.723
2017 Wu X, Zhang Y. TET-mediated active DNA demethylation: mechanism, function and beyond. Nature Reviews. Genetics. PMID 28555658 DOI: 10.1038/Nrg.2017.33  0.337
2017 Wu X, Inoue A, Suzuki T, Zhang Y. Simultaneous mapping of active DNA demethylation and sister chromatid exchange in single cells. Genes & Development. PMID 28360182 DOI: 10.1101/Gad.294843.116  0.36
2017 Chen R, Wu X, Jiang L, Zhang Y. Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity. Cell Reports. 18: 3227-3241. PMID 28355573 DOI: 10.1016/J.Celrep.2017.03.004  0.404
2017 Fenouille N, Bassil CF, Ben-Sahra I, Benajiba L, Alexe G, Ramos A, Pikman Y, Conway AS, Burgess MR, Li Q, Luciano F, Auberger P, Galinsky I, DeAngelo DJ, Stone RM, ... Zhang Y, et al. The creatine kinase pathway is a metabolic vulnerability in EVI1-positive acute myeloid leukemia. Nature Medicine. PMID 28191887 DOI: 10.1038/Nm.4283  0.306
2017 Perkins AS, Wilson M, Ayoub E, Zhang Y, Kathleen ME, Palis J, Li AJ, Calvi LM. High-Level EVI1 Perturbs Hematopoietic Function By Skewing Cells Towards Myeloid Phenotype Via Induction of PU.1/ Spi1 Â Transcription Blood. 130: 2505-2505. DOI: 10.1182/Blood.V130.Suppl_1.2505.2505  0.339
2016 Tao J, Wu H, Coronado AA, de Laittre E, Osterweil EK, Zhang Y, Bear MF. Negative Allosteric Modulation of mGluR5 Partially Corrects Pathophysiology in a Mouse Model of Rett Syndrome. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 11946-11958. PMID 27881780 DOI: 10.1523/Jneurosci.0672-16.2016  0.354
2016 Kim M, Lu F, Zhang Y. Loss of HDAC-Mediated Repression and Gain of NF-κB Activation Underlie Cytokine Induction in ARID1A- and PIK3CA-Mutation-Driven Ovarian Cancer. Cell Reports. 17: 275-88. PMID 27681437 DOI: 10.1016/J.Celrep.2016.09.003  0.678
2016 Lu F, Liu Y, Inoue A, Suzuki T, Zhao K, Zhang Y. Establishing Chromatin Regulatory Landscape during Mouse Preimplantation Development. Cell. 165: 1375-1388. PMID 27259149 DOI: 10.1016/J.Cell.2016.05.050  0.74
2016 Zhang Y, Ran Y, Xiong Y, Zhong ZB, Wang ZH, Fan XL, Ye QF. Effects of TMEM9 gene on cell progression in hepatocellular carcinoma by RNA interference. Oncology Reports. PMID 27220462 DOI: 10.3892/Or.2016.4821  0.305
2016 Wu H, Wu X, Zhang Y. Base-resolution profiling of active DNA demethylation using MAB-seq and caMAB-seq. Nature Protocols. 11: 1081-1100. PMID 27172168 DOI: 10.1038/Nprot.2016.069  0.318
2016 Wilson M, Tsakraklides V, Tran M, Xiao YY, Zhang Y, Perkins AS. EVI1 interferes with myeloid maturation via transcriptional repression of Cebpa, via binding to two far downstream regulatory elements. The Journal of Biological Chemistry. PMID 27129260 DOI: 10.1074/Jbc.M115.708156  0.386
2016 Yao J, Leng L, Sauler M, Fu W, Zheng J, Zhang Y, Du X, Yu X, Lee P, Bucala R. Transcription factor ICBP90 regulates the MIF promoter and immune susceptibility locus. The Journal of Clinical Investigation. PMID 26752645 DOI: 10.1172/Jci81937  0.349
2015 Jiang H, Xu Z, Zhong P, Ren Y, Liang G, Schilling HA, Hu Z, Zhang Y, Wang X, Chen S, Yan Z, Feng J. Cell cycle and p53 gate the direct conversion of human fibroblasts to dopaminergic neurons. Nature Communications. 6: 10100. PMID 26639555 DOI: 10.1038/Ncomms10100  0.341
2015 Chung YG, Matoba S, Liu Y, Eum JH, Lu F, Jiang W, Lee JE, Sepilian V, Cha KY, Lee DR, Zhang Y. Histone Demethylase Expression Enhances Human Somatic Cell Nuclear Transfer Efficiency and Promotes Derivation of Pluripotent Stem Cells. Cell Stem Cell. PMID 26526725 DOI: 10.1016/J.Stem.2015.10.001  0.718
2015 Yardimci H, Zhang Y. Charting oxidized methylcytosines at base resolution. Nature Structural & Molecular Biology. 22: 656-61. PMID 26333715 DOI: 10.1038/Nsmb.3071  0.309
2015 Cao Y, Zhang S, Yuan N, Wang J, Li X, Xu F, Lin W, Song L, Fang Y, Wang Z, Wang Z, Zhang H, Zhang Y, Zhao W, Hu S, et al. Hierarchal autophagic divergence of hematopoietic system. The Journal of Biological Chemistry. PMID 26245898 DOI: 10.1074/Jbc.M115.650028  0.325
2015 Lu F, Zhang Y. Cell totipotency: molecular features, induction, and maintenance. National Science Review. 2: 217-225. PMID 26114010 DOI: 10.1093/Nsr/Nwv009  0.715
2015 Jiang W, Liu Y, Liu R, Zhang K, Zhang Y. The lncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression. Cell Reports. 11: 137-48. PMID 25843708 DOI: 10.1016/J.Celrep.2015.03.008  0.376
2015 Inoue A, Shen L, Matoba S, Zhang Y. Haploinsufficiency, but not defective paternal 5mC oxidation, accounts for the developmental defects of maternal Tet3 knockouts. Cell Reports. 10: 463-70. PMID 25640176 DOI: 10.1016/J.Celrep.2014.12.049  0.313
2014 Matoba S, Liu Y, Lu F, Iwabuchi KA, Shen L, Inoue A, Zhang Y. Embryonic development following somatic cell nuclear transfer impeded by persisting histone methylation. Cell. 159: 884-95. PMID 25417163 DOI: 10.1016/J.Cell.2014.09.055  0.733
2014 Wu H, Wu X, Shen L, Zhang Y. Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing. Nature Biotechnology. 32: 1231-40. PMID 25362244 DOI: 10.1038/Nbt.3073  0.322
2014 Shen L, Inoue A, He J, Liu Y, Lu F, Zhang Y. Tet3 and DNA replication mediate demethylation of both the maternal and paternal genomes in mouse zygotes. Cell Stem Cell. 15: 459-70. PMID 25280220 DOI: 10.1016/J.Stem.2014.09.002  0.689
2014 Lu F, Liu Y, Jiang L, Yamaguchi S, Zhang Y. Role of Tet proteins in enhancer activity and telomere elongation. Genes & Development. 28: 2103-19. PMID 25223896 DOI: 10.1101/Gad.248005.114  0.722
2014 Inoue A, Zhang Y. Nucleosome assembly is required for nuclear pore complex assembly in mouse zygotes. Nature Structural & Molecular Biology. 21: 609-16. PMID 24908396 DOI: 10.1038/Nsmb.2839  0.354
2014 Shen L, Song CX, He C, Zhang Y. Mechanism and function of oxidative reversal of DNA and RNA methylation. Annual Review of Biochemistry. 83: 585-614. PMID 24905787 DOI: 10.1146/Annurev-Biochem-060713-035513  0.355
2014 Li E, Zhang Y. DNA Methylation in Mammals Cold Spring Harbor Perspectives in Biology. 6. PMID 24789823 DOI: 10.1101/Cshperspect.A019133  0.388
2014 Tuesta LM, Zhang Y. Mechanisms of epigenetic memory and addiction. The Embo Journal. 33: 1091-103. PMID 24778453 DOI: 10.1002/Embj.201488106  0.77
2014 Li X, Wei W, Zhao QY, Widagdo J, Baker-Andresen D, Flavell CR, D'Alessio A, Zhang Y, Bredy TW. Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptation. Proceedings of the National Academy of Sciences of the United States of America. 111: 7120-5. PMID 24757058 DOI: 10.1073/Pnas.1318906111  0.355
2014 Bard-Chapeau EA, Szumska D, Jacob B, Chua BQ, Chatterjee GC, Zhang Y, Ward JM, Urun F, Kinameri E, Vincent SD, Ahmed S, Bhattacharya S, Osato M, Perkins AS, Moore AW, et al. Mice carrying a hypomorphic Evi1 allele are embryonic viable but exhibit severe congenital heart defects. Plos One. 9: e89397. PMID 24586749 DOI: 10.1371/Journal.Pone.0089397  0.339
2014 Glass C, Wilson M, Gonzalez R, Zhang Y, Perkins AS. The role of EVI1 in myeloid malignancies. Blood Cells, Molecules & Diseases. 53: 67-76. PMID 24495476 DOI: 10.1016/J.Bcmd.2014.01.002  0.356
2014 Wu H, Zhang Y. Reversing DNA Methylation: Mechanisms, Genomics, and Biological Functions Cell. 156: 45-68. PMID 24439369 DOI: 10.1016/J.Cell.2013.12.019  0.356
2014 Wang Y, Zhang Y. Regulation of TET protein stability by calpains Cell Reports. 6: 278-284. PMID 24412366 DOI: 10.1016/J.Celrep.2013.12.031  0.376
2014 Yue D, Fan Q, Chen X, Li F, Wang L, Huang L, Dong W, Chen X, Zhang Z, Liu J, Wang F, Wang M, Zhang B, Zhang Y. Epigenetic inactivation of SPINT2 is associated with tumor suppressive function in esophageal squamous cell carcinoma. Experimental Cell Research. 322: 149-58. PMID 24269829 DOI: 10.1016/J.Yexcr.2013.11.009  0.352
2013 Yamaguchi S, Shen L, Liu Y, Sendler D, Zhang Y. Role of Tet1 in erasure of genomic imprinting. Nature. 504: 460-4. PMID 24291790 DOI: 10.1038/Nature12805  0.378
2013 Kohli RM, Zhang Y. TET enzymes, TDG and the dynamics of DNA demethylation. Nature. 502: 472-9. PMID 24153300 DOI: 10.1038/Nature12750  0.335
2013 Jiang W, Zhang D, Bursac N, Zhang Y. WNT3 is a biomarker capable of predicting the definitive endoderm differentiation potential of hESCs. Stem Cell Reports. 1: 46-52. PMID 24052941 DOI: 10.1016/J.Stemcr.2013.03.003  0.328
2013 Zhang Y, Owens K, Hatem L, Glass CH, Karuppaiah K, Camargo F, Perkins AS. Essential role of PR-domain protein MDS1-EVI1 in MLL-AF9 leukemia. Blood. 122: 2888-92. PMID 24021671 DOI: 10.1182/Blood-2012-08-453662  0.311
2013 Glass C, Wuertzer C, Cui X, Bi Y, Davuluri R, Xiao YY, Wilson M, Owens K, Zhang Y, Perkins A. Global Identification of EVI1 Target Genes in Acute Myeloid Leukemia. Plos One. 8: e67134. PMID 23826213 DOI: 10.1371/Journal.Pone.0067134  0.353
2013 Lin FJ, Shen L, Jang CW, Falnes PØ, Zhang Y. Ikbkap/Elp1 deficiency causes male infertility by disrupting meiotic progression. Plos Genetics. 9: e1003516. PMID 23717213 DOI: 10.1371/Journal.Pgen.1003516  0.355
2013 Shen L, Wu H, Diep D, Yamaguchi S, D'Alessio AC, Fung HL, Zhang K, Zhang Y. Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics. Cell. 153: 692-706. PMID 23602152 DOI: 10.1016/J.Cell.2013.04.002  0.324
2013 He J, Shen L, Wan M, Taranova O, Wu H, Zhang Y. Kdm2b maintains murine embryonic stem cell status by recruiting PRC1 complex to CpG islands of developmental genes. Nature Cell Biology. 15: 373-84. PMID 23502314 DOI: 10.1038/Ncb2702  0.402
2013 Yamaguchi S, Hong K, Liu R, Inoue A, Shen L, Zhang K, Zhang Y. Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during germ cell reprogramming. Cell Research. 23: 329-39. PMID 23399596 DOI: 10.1038/Cr.2013.22  0.386
2013 Liang G, Zhang Y. Embryonic stem cell and induced pluripotent stem cell: An epigenetic perspective Cell Research. 23: 49-69. PMID 23247625 DOI: 10.1038/Cr.2012.175  0.346
2013 Jiang W, Wang J, Zhang Y. Histone H3K27me3 demethylases KDM6A and KDM6B modulate definitive endoderm differentiation from human ESCs by regulating WNT signaling pathway Cell Research. 23: 122-130. PMID 22907667 DOI: 10.1038/Cr.2012.119  0.329
2013 Yamaguchi S, Hong K, Liu R, Shen L, Inoue A, Diep D, Zhang K, Zhang Y. 5mC and 5hmC dynamics during PGC reprogramming and role of Tet1 in female meiosis Epigenetics & Chromatin. 6. DOI: 10.1186/1756-8935-6-S1-P89  0.408
2013 Shen L, Wu H, Diep D, D’Alessio AC, Fung A, Zhang K, Zhang Y. Genome-wide analysis reveals TET-and TDG-mediated 5-methylcytosine oxidation dynamics Epigenetics & Chromatin. 6: P88. DOI: 10.1186/1756-8935-6-S1-P88  0.367
2013 Zhang Y, Cui X, Wuertzer CA, Perkins AS. EVI1, A Potential Regulator Of CEBPA; A Contributory Mechanism In Leukemogenesis? Blood. 122: 2495-2495. DOI: 10.1182/Blood.V122.21.2495.2495  0.357
2013 Ling D, Tee A, Nelson C, Xu N, Atmadibrata B, Liu PY, Pasquier E, Marshall GM, Suzuki T, Zhang Y, Liu T. Abstract 2985: The histone demethylase JMJD1A induces neuroblastoma cell migration and invasion. Cancer Research. 73: 2985-2985. DOI: 10.1158/1538-7445.Am2013-2985  0.378
2012 Wan M, Liang J, Xiong Y, Shi F, Zhang Y, Lu W, He Q, Yang D, Chen R, Liu D, Barton M, Songyang Z. The trithorax group protein Ash2l is essential for pluripotency and maintaining open chromatin in embryonic stem cells. The Journal of Biological Chemistry. 288: 5039-48. PMID 23239880 DOI: 10.1074/Jbc.M112.424515  0.336
2012 Inoue A, Matoba S, Zhang Y. Transcriptional activation of transposable elements in mouse zygotes is independent of Tet3-mediated 5-methylcytosine oxidation. Cell Research. 22: 1640-9. PMID 23184059 DOI: 10.1038/Cr.2012.160  0.359
2012 Yamaguchi S, Hong K, Liu R, Shen L, Inoue A, Diep D, Zhang K, Zhang Y. Tet1 controls meiosis by regulating meiotic gene expression. Nature. 492: 443-7. PMID 23151479 DOI: 10.1038/Nature11709  0.436
2012 Shen L, Zhang Y. Enzymatic analysis of Tet proteins: key enzymes in the metabolism of DNA methylation. Methods in Enzymology. 512: 93-105. PMID 22910204 DOI: 10.1016/B978-0-12-391940-3.00005-6  0.32
2012 Nabel CS, Jia H, Ye Y, Shen L, Goldschmidt HL, Stivers JT, Zhang Y, Kohli RM. AID/APOBEC deaminases disfavor modified cytosines implicated in DNA demethylation. Nature Chemical Biology. 8: 751-8. PMID 22772155 DOI: 10.1038/Nchembio.1042  0.339
2012 Adelmant G, Calkins AS, Garg BK, Card JD, Askenazi M, Miron A, Sobhian B, Zhang Y, Nakatani Y, Silver PA, Iglehart JD, Marto JA, Lazaro JB. DNA ends alter the molecular composition and localization of Ku multicomponent complexes. Molecular & Cellular Proteomics : McP. 11: 411-21. PMID 22535209 DOI: 10.1074/Mcp.M111.013581  0.337
2012 Liang G, He J, Zhang Y. Kdm2b promotes induced pluripotent stem cell generation by facilitating gene activation early in reprogramming Nature Cell Biology. 14: 457-466. PMID 22522173 DOI: 10.1038/Ncb2483  0.391
2012 Yan W, Liu S, Xu E, Zhang J, Zhang Y, Chen X, Chen X. Histone deacetylase inhibitors suppress mutant p53 transcription via histone deacetylase 8 Oncogene. 32: 599-609. DOI: 10.1038/Onc.2012.81  0.326
2012 Liang G, He J, Zhang Y. Erratum: Kdm2b promotes induced pluripotent stem cell generation by facilitating gene activation early in reprogramming (Nature Cell Biology (2012) 14 (457-466)) Nature Cell Biology. 14. DOI: 10.1038/Ncb2518  0.337
2012 Wu H, Zhang Y. Early embryos reprogram DNA methylation in two steps Cell Stem Cell. 10: 487-489. DOI: 10.1016/J.Stem.2012.04.012  0.329
2011 Wu H, Zhang Y. Mechanisms and functions of Tet proteinmediated 5-methylcytosine oxidation Genes and Development. 25: 2436-2452. PMID 22156206 DOI: 10.1101/Gad.179184.111  0.417
2011 Inoue A, Shen L, Dai Q, He C, Zhang Y. Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development. Cell Research. 21: 1670-6. PMID 22124233 DOI: 10.1038/Cr.2011.189  0.341
2011 Zhang Y, Wheatley R, Fulkerson E, Tapp A, Estes PA. Mastermind mutations generate a unique constellation of midline cells within the Drosophila CNS. Plos One. 6: e26197. PMID 22046261 DOI: 10.1371/Journal.Pone.0026197  0.357
2011 Zhang Y, Sicot G, Cui X, Vogel M, Wuertzer CA, Lezon-Geyda K, Wheeler J, Harki DA, Muzikar KA, Stolper DA, Dervan PB, Perkins AS. Targeting a DNA binding motif of the EVI1 protein by a pyrrole-imidazole polyamide. Biochemistry. 50: 10431-41. PMID 22039883 DOI: 10.1021/Bi200962U  0.332
2011 Inoue A, Zhang Y. Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos. Science (New York, N.Y.). 334: 194. PMID 21940858 DOI: 10.1126/Science.1212483  0.343
2011 Tao Y, Neppl RL, Huang ZP, Chen J, Tang RH, Cao R, Zhang Y, Jin SW, Wang DZ. The histone methyltransferase Set7/9 promotes myoblast differentiation and myofibril assembly. The Journal of Cell Biology. 194: 551-65. PMID 21859860 DOI: 10.1083/Jcb.201010090  0.305
2011 Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science (New York, N.Y.). 333: 1300-3. PMID 21778364 DOI: 10.1126/Science.1210597  0.347
2011 Wu H, Zhang Y. Tet1 and 5-hydroxymethylation: A genome-wide view in mouse embryonic stem cells Cell Cycle. 10: 2428-2436. PMID 21750410 DOI: 10.4161/Cc.10.15.16930  0.412
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2001 Wang H, Cao R, Xia L, Erdjument-Bromage H, Borchers C, Tempst P, Zhang Y. Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase Molecular Cell. 8: 1207-1217. PMID 11779497 DOI: 10.1016/S1097-2765(01)00405-1  0.306
2001 Zhang Y, Reinberg D. Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails. Genes & Development. 15: 2343-60. PMID 11562345 DOI: 10.1101/Gad.927301  0.525
2001 Wang H, Zhang Y. Mi2, an auto-antigen for dermatomyositis, is an ATP-dependent nucleosome remodeling factor. Nucleic Acids Research. 29: 2517-2521. PMID 11410659 DOI: 10.1093/Nar/29.12.2517  0.38
2001 Wang H, Huang ZQ, Xia L, Feng Q, Erdjument-Bromage H, Strahl BD, Briggs SD, Allis CD, Wong J, Tempst P, Zhang Y. Methylation of histone H4 at arginine 3 facilitating transcriptional activation by nuclear hormone receptor Science. 293: 853-857. PMID 11387442 DOI: 10.1126/Science.1060781  0.371
2001 Xia L, Zhang Y. Sp1 and ETS family transcription factors regulate the mouse Mta2 gene expression Gene. 268: 77-85. PMID 11368903 DOI: 10.1016/S0378-1119(01)00429-2  0.404
2001 Lai A, Kennedy BK, Barbie DA, Bertos NR, Yang XJ, Theberge MC, Tsai SC, Seto E, Zhang Y, Kuzmichev A, Lane WS, Reinberg D, Harlow E, Branton PE. RBP1 recruits the mSIN3-histone deacetylase complex to the pocket of retinoblastoma tumor suppressor family proteins found in limited discrete regions of the nucleus at growth arrest. Molecular and Cellular Biology. 21: 2918-32. PMID 11283269 DOI: 10.1128/Mcb.21.8.2918-2932.2001  0.575
2000 Fong CW, Zhang Y, Neo SY, Lin S. Specific induction of RGS16 (regulator of G-protein signalling 16) mRNA by protein kinase C in CEM leukaemia cells is mediated via tumour necrosis factor alpha in a calcium-sensitive manner. Biochemical Journal. 352: 747-753. DOI: 10.1042/Bj3520747  0.308
1999 Ng HH, Zhang Y, Hendrich B, Johnson CA, Turner BM, Erdjument-Bromage H, Tempst P, Reinberg D, Bird A. MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex. Nature Genetics. 23: 58-61. PMID 10471499 DOI: 10.1038/12659  0.59
1999 Zhang Y, Ng HH, Erdjument-Bromage H, Tempst P, Bird A, Reinberg D. Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation. Genes & Development. 13: 1924-35. PMID 10444591 DOI: 10.1101/Gad.13.15.1924  0.565
1998 Zhang Y, LeRoy G, Seelig HP, Lane WS, Reinberg D. The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities Cell. 95: 279-289. PMID 9790534 DOI: 10.1016/S0092-8674(00)81758-4  0.563
1998 Sun X, Zhang Y, Cho H, Rickert P, Lees E, Lane W, Reinberg D. NAT, a human complex containing Srb polypeptides that functions as a negative regulator of activated transcription. Molecular Cell. 2: 213-22. PMID 9734358 DOI: 10.1016/S1097-2765(00)80131-8  0.532
1998 Zhang Y, Sun ZW, Iratni R, Erdjument-Bromage H, Tempst P, Hampsey M, Reinberg D. SAP30, a novel protein conserved between human and yeast, is a component of a histone deacetylase complex. Molecular Cell. 1: 1021-31. PMID 9651585 DOI: 10.1016/S1097-2765(00)80102-1  0.564
1997 Zhang Y, Lin S. Molecular characterization of the cyclin-dependent kinase inhibitor p27 promoter Biochimica Et Biophysica Acta. 1353: 307-318. PMID 9349726 DOI: 10.1016/S0167-4781(97)00063-8  0.314
1997 Zhang Y, Iratni R, Erdjument-Bromage H, Tempst P, Reinberg D. Histone deacetylases and SAP18, a novel polypeptide, are components of a human Sin3 complex. Cell. 89: 357-64. PMID 9150135 DOI: 10.1016/S0092-8674(00)80216-0  0.572
1994 Coats SR, Zhang Y, Epstein LM. Transcription of satellite 2 DNA from the newt is drivev by a snRNA type of promoter Nucleic Acids Research. 22: 4697-4704. PMID 7984420 DOI: 10.1093/Nar/22.22.4697  0.345
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