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Year Citation  Score
2021 Le Nguyen Ngoc L, Pandey RB, Sompornpisut P. Dynamics and Environmental Characteristics of Spin Labels in a KvAP Voltage Sensor by Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. PMID 33459015 DOI: 10.1021/acs.jpcb.0c08993  0.302
2020 Rangubpit W, Paritanon P, Pandey RB, Sompornpisut P. Thermally induced structural organization of nanodiscs by coarse-grained molecular dynamics simulations. Biophysical Chemistry. 267: 106464. PMID 32927312 DOI: 10.1016/J.Bpc.2020.106464  0.394
2020 Taweechat P, Pandey RB, Sompornpisut P. Conformation, flexibility and hydration of hyaluronic acid by molecular dynamics simulations. Carbohydrate Research. 493: 108026. PMID 32442703 DOI: 10.1016/J.Carres.2020.108026  0.336
2020 Rangubpit W, Sompornpisut P, Pandey R. Structure and dynamics of aquaporin-1. Vitamins and Hormones. 112: 29-46. PMID 32061346 DOI: 10.1016/Bs.Vh.2019.09.001  0.385
2020 Rangubpit W, Kitjaruwankul S, Sompornpisut P, Pandey R. Pinning the conformation of a protein (CorA) in a solute matrix with selective binding Physica a: Statistical Mechanics and Its Applications. 556: 124823. DOI: 10.1016/J.Physa.2020.124823  0.323
2020 Rangubpit W, Pandey R, Sompornpisut P. Temperature Driven Shape Transformation of Nanodiscs by Coarse-Grained Molecular Dynamics Simulations Biophysical Journal. 118: 139a. DOI: 10.1016/J.Bpj.2019.11.886  0.317
2020 Taweechat P, Pandey R, Sompornpisut P. Structure and Hydration Property of Low Molecular Weight Hyaluronic Acid by Molecular Dynamics Simulations Biophysical Journal. 118: 297a. DOI: 10.1016/J.Bpj.2019.11.1682  0.337
2019 Boonamnaj P, Sompornpisut P. Effect of Ionization State on Voltage-Sensor Structure in Resting State of the Hv1 Channel. The Journal of Physical Chemistry. B. 123: 2864-2873. PMID 30854855 DOI: 10.1021/Acs.Jpcb.9B00634  0.471
2019 Boonamnaj P, Paudel SS, Jetsadawisut W, Kitjaruwankul S, Sompornpisut P, Pandey R. Thermal-response of a protein (hHv1) by a coarse-grained MC and all-atom MD computer simulations Physica a: Statistical Mechanics and Its Applications. 527: 121310. DOI: 10.1016/J.Physa.2019.121310  0.358
2018 Boonamnaj P, Sompornpisut P. Insight into the Role of the Hv1 C-Terminal Domain in Dimer Stabilization. The Journal of Physical Chemistry. B. 122: 1037-1048. PMID 29290112 DOI: 10.1021/Acs.Jpcb.7B08669  0.484
2018 Pokhrel R, Sompornpisut P, Chapagain P, Olson B, Gerstman B, Pandey RB. Domain rearrangement and denaturation in Ebola virus protein VP40 Aip Advances. 8: 125129. DOI: 10.1063/1.5063474  0.402
2018 Kitjaruwankul S, Boonamnaj P, Paudel SS, Jetsadawisut W, Sompornpisut P, Pandey R. Thermal-induced folding and unfolding of a transmembrane protein (CorA) Physica a: Statistical Mechanics and Its Applications. 506: 987-992. DOI: 10.1016/J.Physa.2018.05.014  0.313
2017 Pandey R, Kitjaruwankul S, Khrutto C, Sompornpisut P, Farmer B. Thermal Response of Inner and Outer Transmembrane Segments of Cora Protein by a Coarse-Grain Monte Carlo Simulation Biophysical Journal. 112: 50a-51a. DOI: 10.1016/J.Bpj.2016.11.311  0.391
2016 Kitjaruwankul S, Khrutto C, Sompornpisut P, Farmer BL, Pandey RB. Asymmetry in structural response of inner and outer transmembrane segments of CorA protein by a coarse-grain model. The Journal of Chemical Physics. 145: 135101. PMID 27782431 DOI: 10.1063/1.4963807  0.335
2016 Kitjaruwankul S, Wapeesittipan P, Boonamnaj P, Sompornpisut P. Inner and Outer Coordination Shells of Mg(2+) in CorA Selectivity Filter from Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. 120: 406-17. PMID 26727882 DOI: 10.1021/Acs.Jpcb.5B10925  0.397
2015 Sujaree K, Kitjaruwankul S, Boonamnaj P, Supunyabut C, Sompornpisut P. Transmembrane Helix Assembly by Max-Min Ant System Algorithm. Chemical Biology & Drug Design. 86: 1360-72. PMID 26058409 DOI: 10.1111/Cbdd.12600  0.371
2015 Kitjaruwankul S, Boonamnaj P, Fuklang S, Supunyabut C, Sompornpisut P. Shaping the water crevice to accommodate the voltage sensor in a down conformation: a molecular dynamics simulation study. The Journal of Physical Chemistry. B. 119: 6516-24. PMID 25973957 DOI: 10.1021/Acs.Jpcb.5B00787  0.517
2015 Supunyabut C, Fuklang S, Sompornpisut P. Continuum electrostatic approach for evaluating positions and interactions of proteins in a bilayer membrane. Journal of Molecular Graphics & Modelling. 59: 81-91. PMID 25912455 DOI: 10.1016/J.Jmgm.2015.04.003  0.363
2014 Dalmas O, Sompornpisut P, Bezanilla F, Perozo E. Molecular mechanism of Mg2+-dependent gating in CorA. Nature Communications. 5: 3590. PMID 24694723 DOI: 10.1038/Ncomms4590  0.735
2014 Li Q, Wanderling S, Sompornpisut P, Perozo E. Structural basis of lipid-driven conformational transitions in the KvAP voltage-sensing domain. Nature Structural & Molecular Biology. 21: 160-6. PMID 24413055 DOI: 10.1038/Nsmb.2747  0.662
2014 Fuklang S, Supunyabut C, Sompornpisut P. Continuum Electrostatic Approach for Evaluating Membrane Protein Positions in Membrane Biophysical Journal. 106: 6-6. DOI: 10.1016/J.Bpj.2013.11.3689  0.355
2013 Sujaree K, Sompornpisut P. A Metaheuristic Approach to Transmembrane Protein Assembly Using Limited Distance Restraints Advanced Materials Research. 701: 403-407. DOI: 10.4028/Www.Scientific.Net/Amr.701.403  0.39
2012 Woods CJ, Malaisree M, Pattarapongdilok N, Sompornpisut P, Hannongbua S, Mulholland AJ. Long time scale GPU dynamics reveal the mechanism of drug resistance of the dual mutant I223R/H275Y neuraminidase from H1N1-2009 influenza virus. Biochemistry. 51: 4364-75. PMID 22574858 DOI: 10.1021/Bi300561N  0.362
2012 Sujaree K, Sompornpisut P. Novel Metaheuristic-Based Approach for Solving Transmembrane Assembly using Limited Distance Information Biophysical Journal. 102: 173. DOI: 10.1016/J.Bpj.2011.11.937  0.372
2012 Sompornpisut P, Dalmas O, Perozo E. The Open Conformation of the Mg2+ Channel CorA from Solvent Accessibility and Distance Constraints Biophysical Journal. 102: 338a. DOI: 10.1016/J.Bpj.2011.11.1853  0.765
2012 Sompornpisut P, Wannapakdee W. Molecular Dynamic Studies of Transmembrane Voltage Sensor of NaChBac Channel in Up and Down State Models Biophysical Journal. 102: 3-8. DOI: 10.1016/J.Bpj.2011.11.1796  0.489
2012 Kongsune P, Rungrotmongkol T, Nunthaboot N, Yotmanee P, Sompornpisut P, Poovorawan Y, Wolschann P, Hannongbua S. Molecular insights into the binding affinity and specificity of the hemagglutinin cleavage loop from four highly pathogenic H5N1 isolates towards the proprotein convertase furin Monatshefte Fur Chemie. 143: 853-860. DOI: 10.1007/S00706-011-0690-4  0.345
2011 Intharathep P, Rungrotmongkol T, Decha P, Nunthaboot N, Kaiyawet N, Kerdcharoen T, Sompornpisut P, Hannongbua S. Evaluating how rimantadines control the proton gating of the influenza A M2-proton port via allosteric binding outside of the M2-channel: MD simulations. Journal of Enzyme Inhibition and Medicinal Chemistry. 26: 162-8. PMID 20583869 DOI: 10.3109/14756366.2010.482530  0.401
2011 Decha P, Intharathep P, Udommaneethanakit T, Sompornpisut P, Hannongbua S, Wolschann P, Parasuk V. Theoretical studies on the molecular basis of HIV-1RT/NNRTIs interactions. Journal of Enzyme Inhibition and Medicinal Chemistry. 26: 29-36. PMID 20583854 DOI: 10.3109/14756360903563393  0.346
2010 Nunthaboot N, Rungrotmongkol T, Malaisree M, Kaiyawet N, Decha P, Sompornpisut P, Poovorawan Y, Hannongbua S. Evolution of human receptor binding affinity of H1N1 hemagglutinins from 1918 to 2009 pandemic influenza A virus. Journal of Chemical Information and Modeling. 50: 1410-7. PMID 20726599 DOI: 10.1021/Ci100038G  0.3
2010 Chakrapani S, Sompornpisut P, Intharathep P, Roux B, Perozo E. The activated state of a sodium channel voltage sensor in a membrane environment. Proceedings of the National Academy of Sciences of the United States of America. 107: 5435-40. PMID 20207950 DOI: 10.1073/Pnas.0914109107  0.745
2009 Rungrotmongkol T, Udommaneethanakit T, Malaisree M, Nunthaboot N, Intharathep P, Sompornpisut P, Hannongbua S. How does each substituent functional group of oseltamivir lose its activity against virulent H5N1 influenza mutants? Biophysical Chemistry. 145: 29-36. PMID 19733000 DOI: 10.1016/J.Bpc.2009.08.006  0.314
2009 Laohpongspaisan C, Rungrotmongkol T, Intharathep P, Malaisree M, Decha P, Aruksakunwong O, Sompornpisut P, Hannongbua S. Why amantadine loses its function in influenza m2 mutants: MD simulations. Journal of Chemical Information and Modeling. 49: 847-52. PMID 19281265 DOI: 10.1021/Ci800267A  0.407
2009 Phakthanakanok K, Ratanakhanokchai K, Kyu KL, Sompornpisut P, Watts A, Pinitglang S. A computational analysis of SARS cysteine proteinase-octapeptide substrate interaction: implication for structure and active site binding mechanism. Bmc Bioinformatics. 10: S48. PMID 19208150 DOI: 10.1186/1471-2105-10-S1-S48  0.345
2009 Rungrotmongkol T, Decha P, Sompornpisut P, Malaisree M, Intharathep P, Nunthaboot N, Udommaneethanakit T, Aruksakunwong O, Hannongbua S. Combined QM/MM mechanistic study of the acylation process in furin complexed with the H5N1 avian influenza virus hemagglutinin's cleavage site. Proteins. 76: 62-71. PMID 19089976 DOI: 10.1002/Prot.22318  0.301
2009 Malaisree M, Rungrotmongkol T, Nunthaboot N, Aruksakunwong O, Intharathep P, Decha P, Sompornpisut P, Hannongbua S. Source of oseltamivir resistance in avian influenza H5N1 virus with the H274Y mutation. Amino Acids. 37: 725-32. PMID 19002747 DOI: 10.1007/S00726-008-0201-Z  0.321
2008 Rungrotmongkol T, Decha P, Malaisree M, Sompornpisut P, Hannongbua S. Comment on “Cleavage mechanism of the H5N1 hemagglutinin by trypsin and furin” [Amino Acids 2008, January 31, Doi: 10.1007/s00726-007-0611-3] Amino Acids. 35: 511-512. PMID 18704283 DOI: 10.1007/S00726-008-0638-0  0.35
2008 Sompornpisut P, Roux B, Perozo E. Structural refinement of membrane proteins by restrained molecular dynamics and solvent accessibility data. Biophysical Journal. 95: 5349-61. PMID 18676641 DOI: 10.1529/Biophysj.108.142984  0.667
2008 Intharathep P, Laohpongspaisan C, Rungrotmongkol T, Loisruangsin A, Malaisree M, Decha P, Aruksakunwong O, Chuenpennit K, Kaiyawet N, Sompornpisut P, Pianwanit S, Hannongbua S. How amantadine and rimantadine inhibit proton transport in the M2 protein channel. Journal of Molecular Graphics & Modelling. 27: 342-8. PMID 18620883 DOI: 10.1016/J.Jmgm.2008.06.002  0.451
2007 Saen-oon S, Aruksakunwong O, Wittayanarakul K, Sompornpisut P, Hannongbua S. Insight into analysis of interactions of saquinavir with HIV-1 protease in comparison between the wild-type and G48V and G48V/L90M mutants based on QM and QM/MM calculations. Journal of Molecular Graphics & Modelling. 26: 720-7. PMID 17543558 DOI: 10.1016/J.Jmgm.2007.04.009  0.328
2007 Lee VS, Nimmanpipug P, Aruksakunwong O, Promsri S, Sompornpisut P, Hannongbua S. Structural analysis of lead fullerene-based inhibitor bound to human immunodeficiency virus type 1 protease in solution from molecular dynamics simulations. Journal of Molecular Graphics & Modelling. 26: 558-70. PMID 17468026 DOI: 10.1016/J.Jmgm.2007.03.013  0.359
2006 Aruksakunwong O, Wolschann P, Hannongbua S, Sompornpisut P. Molecular dynamic and free energy studies of primary resistance mutations in HIV-1 protease-ritonavir complexes. Journal of Chemical Information and Modeling. 46: 2085-92. PMID 16995739 DOI: 10.1021/Ci060090C  0.362
2006 Aruksakunwong O, Wittayanarakul K, Sompornpisut P, Sanghiran V, Parasuk V, Hannongbua S. Structural and dynamical properties of different protonated states of mutant HIV-1 protease complexed with the saquinavir inhibitor studied by molecular dynamics simulations. Journal of Molecular Graphics & Modelling. 25: 324-32. PMID 16504560 DOI: 10.1016/J.Jmgm.2006.01.004  0.363
2005 Wittayanarakul K, Aruksakunwong O, Sompornpisut P, Sanghiran-Lee V, Parasuk V, Pinitglang S, Hannongbua S. Structure, dynamics and solvation of HIV-1 protease/saquinavir complex in aqueous solution and their contributions to drug resistance: molecular dynamic simulations. Journal of Chemical Information and Modeling. 45: 300-8. PMID 15807491 DOI: 10.1021/Ci049784G  0.342
2005 Wittayanarakul K, Aruksakunwong O, Saen-oon S, Chantratita W, Parasuk V, Sompornpisut P, Hannongbua S. Insights into saquinavir resistance in the G48V HIV-1 protease: quantum calculations and molecular dynamic simulations. Biophysical Journal. 88: 867-79. PMID 15542562 DOI: 10.1529/Biophysj.104.046110  0.381
2003 Sompornpisut P, Wijitkosoom A, Parasuk V, Sirawaraporn W. Molecular Dynamics Simulation of the Human Apo-dihydrofolate Reductase: An Investigation of an Unstable Enzyme Molecular Simulation. 29: 111-121. DOI: 10.1080/0892702031000065782  0.391
2002 Perozo E, Cortes DM, Sompornpisut P, Kloda A, Martinac B. Open channel structure of MscL and the gating mechanism of mechanosensitive channels. Nature. 418: 942-8. PMID 12198539 DOI: 10.1038/Nature00992  0.659
2002 Perozo E, Cuello LG, Cortes DM, Liu YS, Sompornpisut P. EPR approaches to ion channel structure and function. Novartis Foundation Symposium. 245: 146-58; discussion 1. PMID 12027005 DOI: 10.1002/0470868759.Ch10  0.733
2001 Sompornpisut P, Liu YS, Perozo E. Calculation of rigid-body conformational changes using restraint-driven Cartesian transformations. Biophysical Journal. 81: 2530-46. PMID 11606268 DOI: 10.1016/S0006-3495(01)75898-5  0.758
2001 Liu YS, Sompornpisut P, Perozo E. Structure of the KcsA channel intracellular gate in the open state. Nature Structural Biology. 8: 883-7. PMID 11573095 DOI: 10.1038/Nsb1001-883  0.768
2000 Rastelli G, Sirawaraporn W, Sompornpisut P, Vilaivan T, Kamchonwongpaisan S, Quarrell R, Lowe G, Thebtaranonth Y, Yuthavong Y. Interaction of pyrimethamine, cycloguanil, WR99210 and their analogues with Plasmodium falciparum dihydrofolate reductase: structural basis of antifolate resistance. Bioorganic & Medicinal Chemistry. 8: 1117-28. PMID 10882022 DOI: 10.1016/S0968-0896(00)00022-5  0.362
1997 Banci L, Bertini I, Bren KL, Gray HB, Sompornpisut P, Turano P. Solution structure of oxidized Saccharomyces cerevisiae iso-1-cytochrome c. Biochemistry. 36: 8992-9001. PMID 9220987 DOI: 10.1021/Bi963025C  0.359
1997 Banci L, Bertini I, Bruschi M, Sompornpisut P, Turano P. NMR characterization and solution structure determination of the oxidized cytochrome c7 from Desulfuromonas acetoxidans. Proceedings of the National Academy of Sciences of the United States of America. 93: 14396-400. PMID 8962062 DOI: 10.1073/Pnas.93.25.14396  0.326
1994 Sompornpisut P, Kokpol S, Rode BM. Chloride Ion in Liquid Hydroxylamine: Pair Potential Function and Monte Carlo Simulation Zeitschrift FüR Naturforschung A. 49: 797-801. DOI: 10.1515/Zna-1994-7-812  0.322
1993 Sompornpisut P, Kokpol S, Rode BM. Li+ in liquid hydroxylamine: intermolecular potential function and Monte Carlo simulation Chemical Physics. 172: 7-12. DOI: 10.1016/0301-0104(93)80101-E  0.329
Low-probability matches (unlikely to be authored by this person)
2010 Nunthaboot N, Rungrotmongkol T, Malaisree M, Decha P, Kaiyawet N, Intharathep P, Sompornpisut P, Poovorawan Y, Hannongbua S. Molecular insights into human receptor binding to 2009 H1N1 influenza A hemagglutinin Monatshefte Fur Chemie. 141: 801-807. DOI: 10.1007/S00706-010-0319-Z  0.298
2021 Boonamnaj P, Pandey RB, Sompornpisut P. Interaction fingerprint of transmembrane segments in voltage sensor domains. Biophysical Chemistry. 277: 106649. PMID 34147849 DOI: 10.1016/j.bpc.2021.106649  0.295
2010 Rungrotmongkol T, Malaisree M, Nunthaboot N, Sompornpisut P, Hannongbua S. Molecular prediction of oseltamivir efficiency against probable influenza A (H1N1-2009) mutants: molecular modeling approach. Amino Acids. 39: 393-8. PMID 20037767 DOI: 10.1007/S00726-009-0452-3  0.288
2013 Petnapapun K, Chavasiri W, Sompornpisut P. Structure-activity relationships of 3,3'-phenylmethylene-bis-4-hydroxycoumarins: selective and potent inhibitors of gram-positive bacteria. Thescientificworldjournal. 2013: 178649. PMID 24459419 DOI: 10.1155/2013/178649  0.282
2008 Decha P, Rungrotmongkol T, Intharathep P, Malaisree M, Aruksakunwong O, Laohpongspaisan C, Parasuk V, Sompornpisut P, Pianwanit S, Kokpol S, Hannongbua S. Source of high pathogenicity of an avian influenza virus H5N1: why H5 is better cleaved by furin. Biophysical Journal. 95: 128-34. PMID 18375507 DOI: 10.1529/Biophysj.107.127456  0.281
2002 Sompornpisut P, Deechalao N, Vongsvivut J. An inclusion complex of β-Cyclodextrin-L-Phenylalanine : 1H NMR and molecular docking studies Scienceasia. 28: 263-270. DOI: 10.2306/Scienceasia1513-1874.2002.28.263  0.278
2009 Rungrotmongkol T, Intharathep P, Malaisree M, Nunthaboot N, Kaiyawet N, Sompornpisut P, Payungporn S, Poovorawan Y, Hannongbua S. Susceptibility of antiviral drugs against 2009 influenza A (H1N1) virus. Biochemical and Biophysical Research Communications. 385: 390-4. PMID 19463784 DOI: 10.1016/J.Bbrc.2009.05.066  0.276
2007 Aruksakunwong O, Malaisree M, Decha P, Sompornpisut P, Parasuk V, Pianwanit S, Hannongbua S. On the lower susceptibility of oseltamivir to influenza neuraminidase subtype N1 than those in N2 and N9. Biophysical Journal. 92: 798-807. PMID 17085491 DOI: 10.1529/Biophysj.106.092528  0.275
2019 Worawalai W, Doungwichitrkul T, Rangubpit W, Taweechat P, Sompornpisut P, Phuwapraisirisan P. Furofuran lignans as a new series of antidiabetic agents exerting α-glucosidase inhibition and radical scarvenging: Semisynthesis, kinetic study and molecular modeling. Bioorganic Chemistry. 87: 783-793. PMID 30978603 DOI: 10.1016/J.Bioorg.2019.03.077  0.269
2016 Worawalai W, Sompornpisut P, Wacharasindhu S, Phuwapraisirisan P. Voglibose-inspired synthesis of new potent α-glucosidase inhibitors N-1,3-dihydroxypropylaminocyclitols. Carbohydrate Research. PMID 27140506 DOI: 10.1016/J.Carres.2016.04.014  0.267
2020 Ngoc LLN, Itoh SG, Sompornpisut P, Okumura H. Replica-Permutation Molecular Dynamics Simulations of an Amyloid-β(16–22) Peptide and Polyphenols Chemical Physics Letters. 758: 137913. DOI: 10.1016/J.Cplett.2020.137913  0.264
2018 Boonamnaj P, Sompornpisut P. Insight into the Role of Hv1 C-Terminal Domain in Dimer Stabilization Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.707  0.253
2018 Worawalai W, Sompornpisut P, Wacharasindhu S, Phuwapraisirisan P. Quercitol: From a Taxonomic Marker of the Genus Quercus to a Versatile Chiral Building Block of Antidiabetic Agents. Journal of Agricultural and Food Chemistry. PMID 29793339 DOI: 10.1021/Acs.Jafc.8B01584  0.241
2023 Boonamnaj P, Pandey RB, Sompornpisut P. Exploring polyamine interactions and binding pockets in SARS-CoV-2 ORF3a. Journal of Molecular Graphics & Modelling. 122: 108487. PMID 37086515 DOI: 10.1016/j.jmgm.2023.108487  0.24
2007 Aruksakunwong O, Promsri S, Wittayanarakul K, Nimmanpipug P, Lee VS, Wijitkosoom A, Sompornpisut P, Hannongbua S. Current Development on HIV-1 Protease Inhibitors Current Computer - Aided Drug Design. 3: 201-213. DOI: 10.2174/157340907781695431  0.233
2022 Boonamnaj P, Pandey RB, Sompornpisut P. Effect of pH on stability of dimer structure of the main protease of coronavirus-2. Biophysical Chemistry. 287: 106829. PMID 35635893 DOI: 10.1016/j.bpc.2022.106829  0.228
2021 Sompornpisut P, Pandey RB. Self-Organized Morphology and Multiscale Structures of CoVE Proteins. Jom (Warrendale, Pa. : 1989). 1-9. PMID 34075288 DOI: 10.1007/s11837-021-04711-0  0.159
2024 Luthfi M, Pandey RB, Su YC, Sompornpisut P. Deciphering molecular basis of pesticide-induced recurrent pregnancy loss: insights from transcriptomics analysis. Toxicology Mechanisms and Methods. 1-18. PMID 38294000 DOI: 10.1080/15376516.2024.2307975  0.131
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