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Shoudan Liang - Publications

Affiliations: 
1988-1990 Physics University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
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48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kerros C, Miller JP, Mao X, Garber HR, Beird HC, Zhang J, Roszik J, Leonard P, Zhao L, Seth S, Lin P, Sun H, Wierda WG, Khouri IF, Clise-Dwyer K, ... ... Liang S, et al. Abstract 1516: Deep profiling of T-cell repertoire and tumor heterogeneity in chronic lymphocytic leukemia patients following allogeneic T-cell therapy Cancer Research. 80: 1516-1516. DOI: 10.1158/1538-7445.Am2020-1516  0.308
2018 Jelinek J, Lee JT, Cesaroni M, Madzo J, Liang S, Lu Y, Issa JJ. Digital Restriction Enzyme Analysis of Methylation (DREAM). Methods in Molecular Biology (Clifton, N.J.). 1708: 247-265. PMID 29224148 DOI: 10.1007/978-1-4939-7481-8_13  0.375
2017 Maegawa S, Lu Y, Tahara T, Lee JT, Madzo J, Liang S, Jelinek J, Colman RJ, Issa JJ. Caloric restriction delays age-related methylation drift. Nature Communications. 8: 539. PMID 28912502 DOI: 10.1038/S41467-017-00607-3  0.346
2017 Kelly AD, Kroeger H, Yamazaki J, Taby R, Neumann F, Yu S, Lee JT, Patel B, Li Y, He R, Liang S, Lu Y, Cesaroni M, Pierce SA, Kornblau SM, et al. A CpG island methylator phenotype in acute myeloid leukemia independent of IDH mutations and associated with a favorable outcome. Leukemia. PMID 28074068 DOI: 10.1038/Leu.2017.12  0.395
2016 Kelly AD, Kroeger H, Yamazaki J, Taby R, Neumann F, Yu S, Lee JT, He R, Liang S, Lu Y, Cesaroni M, Pierce SA, Kornblau SM, Bueso-Ramos CE, Ravandi F, et al. Abstract 2779: A CpG island methylator phenotype in acute myeloid leukemia independent of IDH mutations and associated with a favorable outcome Cancer Research. 76: 2779-2779. DOI: 10.1158/1538-7445.Am2016-2779  0.413
2015 Lee J, Ji Y, Liang S, Cai G, Müller P. Bayesian Hierarchical Model for Differential Gene Expression Using RNA-seq Data. Statistics in Biosciences. 7: 48-67. PMID 26191087 DOI: 10.1007/S12561-013-9096-7  0.338
2015 Yamazaki J, Jelinek J, Lu Y, Cesaroni M, Madzo J, Neumann F, He R, Taby R, Vasanthakumar A, Macrae T, Ostler KR, Kantarjian HM, Liang S, Estecio MR, Godley LA, et al. TET2 mutations affect non-CpG island DNA methylation at enhancers and transcription factor binding sites in chronic myelomonocytic leukemia. Cancer Research. PMID 25972343 DOI: 10.1158/0008-5472.Can-14-0739  0.395
2015 Kelly AD, Kroeger H, Yamazaki J, Taby R, Neumann F, Lee JT, He R, Liang S, Lu Y, Cesaroni M, Pierce SA, Kornblau SM, Bueso-Ramos CE, Ravandi F, Kantarjian HM, et al. Abstract B22: Genome-wide methylation analysis reveals an independently validated CpG island methylator phenotype associated with favorable prognosis in acute myeloid leukemia. Clinical Cancer Research. 21. DOI: 10.1158/1557-3265.Hemmal14-B22  0.385
2015 Kelly AD, Kroeger H, Yamazaki J, Taby R, Neumann F, Lee JT, He R, Liang S, Lu Y, Cesaroni M, Pierce SA, Kornblau SM, Bueso-Ramos CE, Ravandi F, Kantarjian HM, et al. Abstract 5302: Genome-wide methylation analysis reveals multiple epigenetic subtypes of acute myeloid leukemia Cancer Research. 75: 5302-5302. DOI: 10.1158/1538-7445.Am2015-5302  0.415
2014 Raymond A, Liu B, Liang H, Wei C, Guindani M, Lu Y, Liang S, St John LS, Molldrem J, Nagarajan L. A role for BMP-induced homeobox gene MIXL1 in acute myelogenous leukemia and identification of type I BMP receptor as a potential target for therapy. Oncotarget. 5: 12675-93. PMID 25544748 DOI: 10.18632/Oncotarget.2564  0.355
2014 Oh CD, Lu Y, Liang S, Mori-Akiyama Y, Chen D, de Crombrugghe B, Yasuda H. SOX9 regulates multiple genes in chondrocytes, including genes encoding ECM proteins, ECM modification enzymes, receptors, and transporters. Plos One. 9: e107577. PMID 25229425 DOI: 10.1371/Journal.Pone.0107577  0.349
2014 Jin C, Lu Y, Jelinek J, Liang S, Estecio MR, Barton MC, Issa JP. TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells. Nucleic Acids Research. 42: 6956-71. PMID 24875481 DOI: 10.1093/Nar/Gku372  0.419
2014 Maegawa S, Gough SM, Watanabe-Okochi N, Lu Y, Zhang N, Castoro RJ, Estecio MR, Jelinek J, Liang S, Kitamura T, Aplan PD, Issa JP. Age-related epigenetic drift in the pathogenesis of MDS and AML. Genome Research. 24: 580-91. PMID 24414704 DOI: 10.1101/Gr.157529.113  0.419
2014 Jelinek J, Kroeger H, Yamazaki J, Taby R, Neumann F, Lee JT, He R, Liang S, Lu Y, Cesaroni M, Pierce SA, Kornblau SM, Bueso-Ramos CE, Ravandi-Kashani F, Kantarjian HM, et al. Abstract 2302: CpG hypermethylation marks potentially curable acute myeloid leukemia Cancer Research. 74: 2302-2302. DOI: 10.1158/1538-7445.Am2014-2302  0.376
2013 Malouf GG, Taube JH, Lu Y, Roysarkar T, Panjarian S, Estecio MR, Jelinek J, Yamazaki J, Raynal NJ, Long H, Tahara T, Tinnirello A, Ramachandran P, Zhang XY, Liang S, et al. Architecture of epigenetic reprogramming following Twist1-mediated epithelial-mesenchymal transition. Genome Biology. 14: R144. PMID 24367927 DOI: 10.1186/Gb-2013-14-12-R144  0.399
2013 Mitra R, Müller P, Liang S, Xu Y, Ji Y. Toward breaking the histone code: bayesian graphical models for histone modifications. Circulation. Cardiovascular Genetics. 6: 419-26. PMID 23748248 DOI: 10.1161/Circgenetics.113.000100  0.335
2013 Yamazaki J, Estecio MR, Lu Y, Long H, Malouf GG, Graber D, Huo Y, Ramagli L, Liang S, Kornblau SM, Jelinek J, Issa JP. The epigenome of AML stem and progenitor cells. Epigenetics. 8: 92-104. PMID 23249680 DOI: 10.4161/Epi.23243  0.404
2013 Chen K, Wilson MA, Hirsch C, Watson A, Liang S, Lu Y, Li W, Dent SY. Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8-Tup1 corepressor. Genome Research. 23: 312-22. PMID 23124522 DOI: 10.1101/Gr.141952.112  0.383
2013 Dharamsiri U, Hunsucker SA, Vincent BG, Wu M, Collins EJ, Liang S, Molldrem JJ, Armistead PM. UNC-GRK4-1: An Allele Specific Cancer Testis Antigen Identified Through Genomic Screening Blood. 122: 3246-3246. DOI: 10.1182/Blood.V122.21.3246.3246  0.306
2013 Malouf GG, Su X, Yao H, Wood CG, Lu Y, Liang S, Thompson EJ, Doss DJ, Jelinek J, Issa J, Tannir NM. Abstract 2980: Integrated transcriptome and methylome sequencing of Xp11 translocation renal cell carcinomas reveal uncoupling of DNA methylation and transcriptional profiles. Cancer Research. 73: 2980-2980. DOI: 10.1158/1538-7445.Am2013-2980  0.459
2013 Mitra R, Müller P, Liang S, Yue L, Ji Y. A Bayesian graphical model for ChIP-Seq data on histone modifications Journal of the American Statistical Association. 108: 69-80. DOI: 10.1080/01621459.2012.746058  0.308
2012 Cai G, Li H, Lu Y, Huang X, Lee J, Müller P, Ji Y, Liang S. Accuracy of RNA-Seq and its dependence on sequencing depth. Bmc Bioinformatics. 13: S5. PMID 23320920 DOI: 10.1186/1471-2105-13-S13-S5  0.304
2012 Li H, Su X, Gallegos J, Lu Y, Ji Y, Molldrem JJ, Liang S. dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes. Bmc Bioinformatics. 13: 271. PMID 23083219 DOI: 10.1186/1471-2105-13-271  0.369
2012 Jelinek J, Liang S, Lu Y, He R, Ramagli LS, Shpall EJ, Estecio MR, Issa JP. Conserved DNA methylation patterns in healthy blood cells and extensive changes in leukemia measured by a new quantitative technique. Epigenetics. 7: 1368-78. PMID 23075513 DOI: 10.4161/Epi.22552  0.43
2012 Estécio MR, Gallegos J, Dekmezian M, Lu Y, Liang S, Issa JP. SINE retrotransposons cause epigenetic reprogramming of adjacent gene promoters. Molecular Cancer Research : McR. 10: 1332-42. PMID 22952045 DOI: 10.1158/1541-7786.MCR-12-0351  0.351
2012 Challen GA, Sun D, Jeong M, Luo M, Jelinek J, Berg JS, Bock C, Vasanthakumar A, Gu H, Xi Y, Liang S, Lu Y, Darlington GJ, Meissner A, Issa JP, et al. Dnmt3a is essential for hematopoietic stem cell differentiation. Nature Genetics. 44: 23-31. PMID 22138693 DOI: 10.1038/Ng.1009  0.366
2012 Kleb BN, Estecio M, Zhang J, Tzelepi V, Chung W, Maity S, Logothetis C, Troncoso P, Navone N, Jelinek J, Liang S, Issa J, Aparicio A. Abstract 991: The DNA methylome of castration-resistant prostate cancer Cancer Research. 72: 991-991. DOI: 10.1158/1538-7445.Am2012-991  0.372
2012 Chung W, Bondaruk J, Zhang N, Jelinek J, Estecio M, Liang S, Czerniak B, Issa JJ. Abstract 5004: CpG island methylator phenotype in bladder cancer Cancer Research. 72: 5004-5004. DOI: 10.1158/1538-7445.Am2012-5004  0.375
2011 Lee J, Ji Y, Liang S, Cai G, Müller P. On differential gene expression using RNA-Seq data. Cancer Informatics. 10: 205-15. PMID 21863128 DOI: 10.4137/Cin.S7473  0.338
2011 Jelinek J, Gharibyan V, Estecio MR, Kondo K, He R, Chung W, Lu Y, Zhang N, Liang S, Kantarjian HM, Cortes JE, Issa JP. Aberrant DNA methylation is associated with disease progression, resistance to imatinib and shortened survival in chronic myelogenous leukemia. Plos One. 6: e22110. PMID 21760961 DOI: 10.1371/Journal.Pone.0022110  0.414
2011 Chung W, Bondaruk J, Jelinek J, Lotan Y, Liang S, Czerniak B, Issa JP. Detection of bladder cancer using novel DNA methylation biomarkers in urine sediments. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 20: 1483-91. PMID 21586619 DOI: 10.1158/1055-9965.Epi-11-0067  0.333
2011 Aparicio A, Tzelepi V, Araujo JC, Guo CC, Liang S, Troncoso P, Logothetis CJ, Navone NM, Maity SN. Neuroendocrine prostate cancer xenografts with large-cell and small-cell features derived from a single patient's tumor: morphological, immunohistochemical, and gene expression profiles. The Prostate. 71: 846-56. PMID 21456067 DOI: 10.1002/Pros.21301  0.305
2011 Jelinek J, Liang S, Neumann F, He R, Lu Y, Yamazaki J, Taby RF, Ramagli L, Estecio MR, Issa J. Cancer Drivers Affected by Aberrant DNA Methylation in MDS and AML Blood. 118: 1716-1716. DOI: 10.1182/Blood.V118.21.1716.1716  0.43
2011 Long H, Lu Y, Yamazaki J, Yoon N, Estecio MRH, Jelinek J, Liang S, Issa JJ. Abstract 63: Methylation status of histone H3 Lysine 4 in normal melanocytes is a major determinant of DNA hypermethylation in melanoma Cancer Research. 71: 63-63. DOI: 10.1158/1538-7445.Am2011-63  0.444
2011 Jelinek J, Neumann F, Lu Y, Estecio MRH, He R, Ramagli LS, Liang S, Issa JJ. Abstract 3004: Low levels of methylation in normal DNA mark a large subset of genes primed for hypermethylation in cancer Cancer Research. 71: 3004-3004. DOI: 10.1158/1538-7445.Am2011-3004  0.439
2011 Estecio MRH, Dekmezian M, Gallegos J, Liang S, Issa J. Abstract 2791: SINE retrotransposons cause epigenetic reprogramming of adjacent gene promoters Cancer Research. 71: 2791-2791. DOI: 10.1158/1538-7445.Am2011-2791  0.423
2010 Yang Y, Lu Y, Espejo A, Wu J, Xu W, Liang S, Bedford MT. TDRD3 is an effector molecule for arginine-methylated histone marks. Molecular Cell. 40: 1016-23. PMID 21172665 DOI: 10.1016/J.Molcel.2010.11.024  0.354
2010 Estécio MR, Gallegos J, Vallot C, Castoro RJ, Chung W, Maegawa S, Oki Y, Kondo Y, Jelinek J, Shen L, Hartung H, Aplan PD, Czerniak BA, Liang S, Issa JP. Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer. Genome Research. 20: 1369-82. PMID 20716667 DOI: 10.1101/Gr.107318.110  0.456
2010 Oh CD, Maity SN, Lu JF, Zhang J, Liang S, Coustry F, de Crombrugghe B, Yasuda H. Identification of SOX9 interaction sites in the genome of chondrocytes. Plos One. 5: e10113. PMID 20404928 DOI: 10.1371/Journal.Pone.0010113  0.323
2010 Maegawa S, Hinkal G, Kim HS, Shen L, Zhang L, Zhang J, Zhang N, Liang S, Donehower LA, Issa JP. Widespread and tissue specific age-related DNA methylation changes in mice. Genome Research. 20: 332-40. PMID 20107151 DOI: 10.1101/Gr.096826.109  0.393
2010 Yamazaki J, Estecio MR, Jelinek J, Graber D, Lu Y, Ramagli L, Liang S, Kornblau SM, Issa J. Genome-Wide Epigenetic Analysis of Cancer Stem Cells (CSCs) In Acute Myeloid Leukemia. Blood. 116: 3640-3640. DOI: 10.1182/Blood.V116.21.3640.3640  0.411
2010 Neumann F, Issa J, Lu Y, Estecio MR, He R, Ramagli L, Liang S, Jelinek J. Digital Restriction Enzyme Analysis of Methylation (DREAM) by Next Generation Sequencing Uncovers Epigenetic Disturbances In Acute Myelogenous Leukemia. Blood. 116: 3635-3635. DOI: 10.1182/Blood.V116.21.3635.3635  0.444
2010 Estecio MRH, Yoon N, Dekmezian M, Chung W, Lu Y, Liang S, Issa JJ. Abstract 4802: High-resolution analysis of chromatin association to nuclear lamina in normal and cancer cells Cellular and Molecular Biology. 70: 4802-4802. DOI: 10.1158/1538-7445.Am10-4802  0.304
2009 Jelinek J, Liang S, Estecio MRH, He R, Lu Y, Ramagli LS, Issa JJ. Digital Restriction Enzyme Analysis of Methylation (DREAM) by Next Generation Sequencing Yields High Resolution Maps of DNA Methylation. Blood. 114: 567-567. DOI: 10.1182/Blood.V114.22.567.567  0.427
2009 Liang S. Genome-wide analysis of epigenetic modifications Journal of Computer Science and Technology. 25: 35-41. DOI: 10.1007/s11390-010-9303-7  0.309
2005 Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, et al. Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays. Proceedings of the National Academy of Sciences of the United States of America. 102: 4453-8. PMID 15755812 DOI: 10.1073/Pnas.0408203102  0.345
2000 Tai JT, Brooks EE, Liang S, Somogyi R, Rosete JD, Lawn RM, Shiffman D. Determination of temporal expression patterns for multiple genes in the rat carotid artery injury model. Arteriosclerosis, Thrombosis, and Vascular Biology. 20: 2184-91. PMID 11031202 DOI: 10.1161/01.Atv.20.10.2184  0.323
2000 Shiffman D, Mikita T, Tai JT, Wade DP, Porter JG, Seilhamer JJ, Somogyi R, Liang S, Lawn RM. Large scale gene expression analysis of cholesterol-loaded macrophages. The Journal of Biological Chemistry. 275: 37324-32. PMID 10973959 DOI: 10.1074/Jbc.M004732200  0.336
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