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Riccardo Papa - Publications

Affiliations: 
Biology University of Puerto Rico at Rio Piedras 
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cicconardi F, Milanetti E, Pinheiro de Castro EC, Mazo-Vargas A, Van Belleghem SM, Ruggieri AA, Rastas P, Hanly J, Evans E, Jiggins CD, Owen McMillan W, Papa R, Di Marino D, Martin A, Montgomery SH. Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies. Nature Communications. 14: 5620. PMID 37699868 DOI: 10.1038/s41467-023-41412-5  0.65
2023 Hanly JJ, Loh LS, Mazo-Vargas A, Rivera-Miranda TS, Livraghi L, Tendolkar A, Day CR, Liutikaite N, Earls EA, Corning OBWH, D'Souza N, Hermina-Perez JJ, Mehta C, Ainsworth J, Rossi M, ... Papa R, et al. Frizzled2 receives WntA signaling during butterfly wing pattern formation. Development (Cambridge, England). PMID 37602496 DOI: 10.1242/dev.201868  0.691
2023 Van Belleghem SM, Ruggieri AA, Concha C, Livraghi L, Hebberecht L, Rivera ES, Ogilvie JG, Hanly JJ, Warren IA, Planas S, Ortiz-Ruiz Y, Reed R, Lewis JJ, Jiggins CD, Counterman BA, ... ... Papa R, et al. High level of novelty under the hood of convergent evolution. Science (New York, N.Y.). 379: 1043-1049. PMID 36893249 DOI: 10.1126/science.ade0004  0.827
2023 Ruggieri AA, Livraghi L, Lewis JJ, Evans E, Cicconardi F, Hebberecht L, Ortiz-Ruiz Y, Montgomery SH, Ghezzi A, Rodriguez-Martinez JA, Jiggins CD, McMillan WO, Counterman BA, Papa R, Van Belleghem SM. Erratum: A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility. Genome Research. 32: 2145. PMID 36623869 DOI: 10.1101/gr.277534.122  0.814
2022 Wu N, Evans E, van Schooten B, Meléndez-Rosa J, Ortiz Y, Planas Soto-Navarro SM, Van Belleghem SM, Counterman BA, Papa R, Zhang W. Widespread gene expression divergence in butterfly sensory tissues plays a fundamental role during reproductive isolation and speciation. Molecular Biology and Evolution. PMID 36251882 DOI: 10.1093/molbev/msac225  0.727
2022 Ruggieri AA, Livraghi L, Lewis JJ, Evans E, Cicconardi F, Hebberecht L, Ortiz-Ruiz Y, Montgomery SH, Ghezzi A, Rodriguez-Martinez JA, Jiggins CD, McMillan WO, Counterman BA, Papa R, Van Belleghem SM. A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility. Genome Research. PMID 36109150 DOI: 10.1101/gr.276839.122  0.836
2022 Santiago GA, Flores B, Gonzalez GL, Charriez KN, Cora-Huertas L, Volkman HR, Belleghem SV, Rivera-Amill V, Adams LE, Marzan M, Hernandez L, Cardona I, O'Neill E, Paz-Bailey G, Papa R, et al. Genomic surveillance of SARS-CoV-2 in Puerto Rico reveals emergence of an autochthonous lineage and early detection of variants. Research Square. PMID 35075454 DOI: 10.21203/rs.3.rs-1277781/v1  0.687
2021 Ogilvie JG, Van Belleghem S, Range R, Papa R, McMillan OW, Chouteau M, Counterman BA. Balanced polymorphisms and their divergence in a butterfly. Ecology and Evolution. 11: 18319-18330. PMID 35003675 DOI: 10.1002/ece3.8423  0.709
2021 Rodriguez-Caro F, Fenner J, Bhardwaj S, Cole J, Benson C, Colombara AM, Papa R, Brown MW, Martin A, Range RC, Counterman BA. Novel doublesex duplication associated with sexually dimorphic development of dogface butterfly wings. Molecular Biology and Evolution. PMID 34323995 DOI: 10.1093/molbev/msab228  0.67
2021 Livraghi L, Hanly JJ, Van Bellghem SM, Montejo-Kovacevich G, van der Heijden ES, Loh LS, Ren A, Warren IA, Lewis JJ, Concha C, Hebberecht L, Wright CJ, Walker JM, Foley J, Goldberg ZH, ... ... Papa R, et al. -regulatory switches establish scale colour identity and pattern diversity in . Elife. 10. PMID 34280087 DOI: 10.7554/eLife.68549  0.775
2021 Van Belleghem SM, Cole JM, Montejo-Kovacevich G, Bacquet CN, McMillan WO, Papa R, Counterman BA. Selection and isolation define a heterogeneous divergence landscape between hybridizing Heliconius butterflies. Evolution; International Journal of Organic Evolution. PMID 34019308 DOI: 10.1111/evo.14272  0.84
2021 Van Belleghem SM, Lewis JJ, Rivera ES, Papa R. Heliconius butterflies: a window into the evolution and development of diversity. Current Opinion in Genetics & Development. 69: 72-81. PMID 33714874 DOI: 10.1016/j.gde.2021.01.010  0.465
2020 Lewis JJ, Van Belleghem SM, Papa R, Danko CG, Reed RD. Many functionally connected loci foster adaptive diversification along a neotropical hybrid zone. Science Advances. 6. PMID 32978147 DOI: 10.1126/sciadv.abb8617  0.455
2020 Rossi M, Hausmann AE, Thurman TJ, Montgomery SH, Papa R, Jiggins CD, McMillan WO, Merrill RM. Visual mate preference evolution during butterfly speciation is linked to neural processing genes. Nature Communications. 11: 4763. PMID 32958765 DOI: 10.1038/S41467-020-18609-Z  0.774
2020 Van Belleghem SM, Alicea Roman PA, Gutierrez HC, Counterman BA, Papa R. Correction to 'Perfect mimicry between butterflies is constrained by genetics and development'. Proceedings. Biological Sciences. 287: 20201781. PMID 32842930 DOI: 10.1098/Rspb.2020.1781  0.665
2020 Van Belleghem SM, Alicea Roman PA, Carbia Gutierrez H, Counterman BA, Papa R. Perfect mimicry between butterflies is constrained by genetics and development. Proceedings. Biological Sciences. 287: 20201267. PMID 32693728 DOI: 10.1098/Rspb.2020.1267  0.775
2020 van Schooten B, Meléndez-Rosa J, Van Belleghem SM, Jiggins CD, Tan JD, McMillan WO, Papa R. Divergence of chemosensing during the early stages of speciation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32601213 DOI: 10.1073/Pnas.1921318117  0.769
2020 Rivera-Colón AG, Westerman EL, Van Belleghem SM, Monteiro A, Papa R. Multiple Loci Control Eyespot Number Variation on the Hindwings of Butterflies. Genetics. PMID 32019848 DOI: 10.1534/Genetics.120.303059  0.506
2020 Fenner J, Benson C, Rodriguez-Caro L, Ren A, Papa R, Martin A, Hoffmann F, Range R, Counterman BA. Wnt Genes in Wing Pattern Development of Coliadinae Butterflies Frontiers in Ecology and Evolution. 8. DOI: 10.3389/Fevo.2020.00197  0.729
2019 Concha C, Wallbank RWR, Hanly JJ, Fenner J, Livraghi L, Rivera ES, Paulo DF, Arias C, Vargas M, Sanjeev M, Morrison C, Tian D, Aguirre P, Ferrara S, Foley J, ... ... Papa R, et al. Interplay between Developmental Flexibility and Determinism in the Evolution of Mimetic Heliconius Wing Patterns. Current Biology : Cb. PMID 31735676 DOI: 10.1016/J.Cub.2019.10.010  0.831
2019 Lewis JJ, Geltman RC, Pollak PC, Rondem KE, Van Belleghem SM, Hubisz MJ, Munn PR, Zhang L, Benson C, Mazo-Vargas A, Danko CG, Counterman BA, Papa R, Reed RD. Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry. Proceedings of the National Academy of Sciences of the United States of America. PMID 31712408 DOI: 10.1073/Pnas.1907068116  0.74
2019 Edelman NB, Frandsen PB, Miyagi M, Clavijo B, Davey J, Dikow RB, García-Accinelli G, Van Belleghem SM, Patterson N, Neafsey DE, Challis R, Kumar S, Moreira GRP, Salazar C, Chouteau M, ... ... Papa R, et al. Genomic architecture and introgression shape a butterfly radiation. Science (New York, N.Y.). 366: 594-599. PMID 31672890 DOI: 10.1126/Science.Aaw2090  0.831
2019 Zhang W, Leon-Ricardo BX, van Schooten B, Van Belleghem SM, Counterman BA, McMillan WO, Kronforst MR, Papa R. Comparative transcriptomics provides insights into reticulate and adaptive evolution of a butterfly radiation. Genome Biology and Evolution. PMID 31518398 DOI: 10.1093/Gbe/Evz202  0.819
2019 Florio A, Papa R, Caorsi R, Consolaro A, Gastaldi R, Ravelli A, Gattorno M, Picco P, Rinne T. Ab0090 Inherited Deficit Of Proteoglycan Mimicking Septic Arthritis Annals of the Rheumatic Diseases. 78: 1507-1508. DOI: 10.1136/Annrheumdis-2019-Eular.3617  0.301
2019 Papa R, Rusmini M, Volpi S, Caorsi R, Picco P, Grossi A, Caroli F, Bovis F, Musso V, Obici L, Castana C, Ravelli A, Gijn MEv, Ceccherini I, Gattorno M. Fri0568 The Use Of Next Generation Sequencing Panel In Undifferentiated Autoinflammatory Diseases Identify A Separate Subset Of Colchicine-Responder Recurrent Fevers Distinct From Pfapa Syndrome Annals of the Rheumatic Diseases. 78: 979-980. DOI: 10.1136/Annrheumdis-2019-Eular.3562  0.312
2018 van Schooten B, Godoy-Vitorino F, McMillan WO, Papa R. Conserved microbiota among young butterfly species. Peerj. 6: e5502. PMID 30310733 DOI: 10.7717/Peerj.5502  0.695
2018 Van Belleghem SM, Papa R, Ortiz-Zuazaga H, Hendrickx F, Jiggins CD, McMillan WO, Counterman BA. patternize: An R package for quantifying colour pattern variation. Methods in Ecology and Evolution. 9: 390-398. PMID 29755717 DOI: 10.1111/2041-210X.12853  0.787
2018 Van Belleghem SM, Baquero M, Papa R, Salazar C, McMillan WO, Counterman BA, Jiggins CD, Martin SH. Patterns of Z chromosome divergence among Heliconius species highlight the importance of historical demography. Molecular Ecology. PMID 29569384 DOI: 10.1111/Mec.14560  0.805
2017 Papa R, Doglio M, Lachmann HJ, Ozen S, Frenkel J, Simon A, Neven B, Kuemmerle-Deschner J, Ozgodan H, Caorsi R, Federici S, Finetti M, Trachana M, Brunner J, Bezrodnik L, et al. A web-based collection of genotype-phenotype associations in hereditary recurrent fevers from the Eurofever registry. Orphanet Journal of Rare Diseases. 12: 167. PMID 29047407 DOI: 10.1186/S13023-017-0720-3  0.327
2017 Van Belleghem SM, Rastas P, Papanicolaou A, Martin SH, Arias CF, Supple MA, Hanly JJ, Mallet J, Lewis JJ, Hines HM, Ruiz M, Salazar C, Linares M, Moreira GRP, Jiggins CD, ... ... Papa R, et al. Complex modular architecture around a simple toolkit of wing pattern genes. Nature Ecology & Evolution. 1. PMID 28523290 DOI: 10.1038/S41559-016-0052  0.841
2016 van Schooten B, Jiggins CD, Briscoe AD, Papa R. Genome-wide analysis of ionotropic receptors provides insight into their evolution in Heliconius butterflies. Bmc Genomics. 17: 254. PMID 27004525 DOI: 10.1186/S12864-016-2572-Y  0.552
2015 Supple MA, Papa R, Hines HM, McMillan WO, Counterman BA. Divergence with gene flow across a speciation continuum of Heliconius butterflies. Bmc Evolutionary Biology. 15: 204. PMID 26403600 DOI: 10.1186/S12862-015-0486-Y  0.844
2015 Kronforst MR, Papa R. The functional basis of wing patterning in Heliconius butterflies: the molecules behind mimicry. Genetics. 200: 1-19. PMID 25953905 DOI: 10.1534/Genetics.114.172387  0.54
2015 Velez-Zuazo X, Alfaro-Shigueto J, Mangel J, Papa R, Agnarsson I. What barcode sequencing reveals about the shark fishery in Peru Fisheries Research. 161: 34-41. DOI: 10.1016/J.Fishres.2014.06.005  0.386
2014 Nadeau NJ, Ruiz M, Salazar P, Counterman B, Medina JA, Ortiz-Zuazaga H, Morrison A, McMillan WO, Jiggins CD, Papa R. Population genomics of parallel hybrid zones in the mimetic butterflies, H. melpomene and H. erato. Genome Research. 24: 1316-33. PMID 24823669 DOI: 10.1101/Gr.169292.113  0.842
2014 Supple M, Papa R, Counterman B, McMillan WO. The genomics of an adaptive radiation: Insights across the heliconius speciation continuum Advances in Experimental Medicine and Biology. 781: 249-271. PMID 24277304 DOI: 10.1007/978-94-007-7347-9_13  0.83
2013 Chiesa S, Filonzi L, Vaghi M, Papa R, Marzano FN. Molecular barcoding of an atypical cyprinid population assessed by cytochrome B gene sequencing. Zoological Science. 30: 408-13. PMID 23646946 DOI: 10.2108/Zsj.30.408  0.394
2013 Papa R, Kapan DD, Counterman BA, Maldonado K, Lindstrom DP, Reed RD, Nijhout HF, Hrbek T, McMillan WO. Multi-allelic major effect genes interact with minor effect QTLs to control adaptive color pattern variation in Heliconius erato. Plos One. 8: e57033. PMID 23533571 DOI: 10.1371/Journal.Pone.0057033  0.844
2012 Martin A, Papa R, Nadeau NJ, Hill RI, Counterman BA, Halder G, Jiggins CD, Kronforst MR, Long AD, McMillan WO, Reed RD. Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand. Proceedings of the National Academy of Sciences of the United States of America. 109: 12632-7. PMID 22802635 DOI: 10.1073/Pnas.1204800109  0.837
2012 Hines HM, Papa R, Ruiz M, Papanicolaou A, Wang C, Nijhout HF, McMillan WO, Reed RD. Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation. Bmc Genomics. 13: 288. PMID 22747837 DOI: 10.1186/1471-2164-13-288  0.747
2011 Hines HM, Counterman BA, Papa R, Albuquerque de Moura P, Cardoso MZ, Linares M, Mallet J, Reed RD, Jiggins CD, Kronforst MR, McMillan WO. Wing patterning gene redefines the mimetic history of Heliconius butterflies. Proceedings of the National Academy of Sciences of the United States of America. 108: 19666-71. PMID 22084094 DOI: 10.1073/Pnas.1110096108  0.84
2011 Reed RD, Papa R, Martin A, Hines HM, Counterman BA, Pardo-Diaz C, Jiggins CD, Chamberlain NL, Kronforst MR, Chen R, Halder G, Nijhout HF, McMillan WO. optix drives the repeated convergent evolution of butterfly wing pattern mimicry. Science (New York, N.Y.). 333: 1137-41. PMID 21778360 DOI: 10.1126/Science.1208227  0.836
2010 Counterman BA, Araujo-Perez F, Hines HM, Baxter SW, Morrison CM, Lindstrom DP, Papa R, Ferguson L, Joron M, Ffrench-Constant RH, Smith CP, Nielsen DM, Chen R, Jiggins CD, Reed RD, et al. Genomic hotspots for adaptation: the population genetics of Müllerian mimicry in Heliconius erato. Plos Genetics. 6: e1000796. PMID 20140239 DOI: 10.1371/Journal.Pgen.1000796  0.841
2008 Papa R, Martin A, Reed RD. Genomic hotspots of adaptation in butterfly wing pattern evolution Current Opinion in Genetics and Development. 18: 559-564. PMID 19135357 DOI: 10.1016/J.Gde.2008.11.007  0.591
2008 Baxter SW, Papa R, Chamberlain N, Humphray SJ, Joron M, Morrison C, ffrench-Constant RH, McMillan WO, Jiggins CD. Convergent evolution in the genetic basis of Müllerian mimicry in heliconius butterflies. Genetics. 180: 1567-77. PMID 18791259 DOI: 10.1534/Genetics.107.082982  0.802
2008 Papa R, Morrison CM, Walters JR, Counterman BA, Chen R, Halder G, Ferguson L, Chamberlain N, Ffrench-Constant R, Kapan DD, Jiggins CD, Reed RD, McMillan WO. Highly conserved gene order and numerous novel repetitive elements in genomic regions linked to wing pattern variation in Heliconius butterflies. Bmc Genomics. 9: 345. PMID 18647405 DOI: 10.1186/1471-2164-9-345  0.835
2006 Joron M, Papa R, Beltrán M, Chamberlain N, Mavárez J, Baxter S, Abanto M, Bermingham E, Humphray SJ, Rogers J, Beasley H, Barlow K, ffrench-Constant RH, Mallet J, McMillan WO, et al. A conserved supergene locus controls colour pattern diversity in Heliconius butterflies. Plos Biology. 4: e303. PMID 17002517 DOI: 10.1371/Journal.Pbio.0040303  0.826
2006 Kapan DD, Flanagan NS, Tobler A, Papa R, Reed RD, Gonzalez JA, Restrepo MR, Martinez L, Maldonado K, Ritschoff C, Heckel DG, McMillan WO. Localization of Müllerian mimicry genes on a dense linkage map of Heliconius erato. Genetics. 173: 735-57. PMID 16489214 DOI: 10.1534/Genetics.106.057166  0.718
2006 Maldini M, Nonnis Marzano F, Fortes GG, Papa R, Gandolfi G. Fish and seafood traceability based on AFLP markers: Elaboration of a species database Aquaculture. 261: 487-494. DOI: 10.1016/J.Aquaculture.2006.07.010  0.355
2005 Papa R, Troggio M, Ajmone-Marsan P, Nonnis Marzano F. An improved protocol for the production of AFLP™ markers in complex genomes by means of capillary electrophoresis Journal of Animal Breeding and Genetics. 122: 62-68. PMID 16130490 DOI: 10.1111/J.1439-0388.2004.00476.X  0.376
2003 Razzoli M, Papa R, Valsecchi P, Marzano FN. AFLP to Assess Genetic Variation in Laboratory Gerbils (Meriones unguiculatus) Journal of Heredity. 94: 507-511. PMID 14691317 DOI: 10.1093/Jhered/Esg097  0.336
2003 Papa R, Marzano FN, Rossi V, Gandolfi G. Genetic diversity and adaptability of two species of Mugilidae (Teleostei: Perciformes) of the Po river delta coastal lagoons Oceanologica Acta. 26: 121-128. DOI: 10.1016/S0399-1784(02)01235-5  0.395
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