Mark Adam Ditzler - Publications

Affiliations: 
NASA Ames Research Center, Mountain View, CA, United States 
Area:
RNA, Origin of life, Astrobiology

13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Popović M, Ellingson AQ, Chu TP, Wei C, Pohorille A, Ditzler MA. In vitro selections with RNAs of variable length converge on a robust catalytic core. Nucleic Acids Research. PMID 33367725 DOI: 10.1093/nar/gkaa1238  0.769
2019 Rose KM, Alves Ferreira-Bravo I, Li M, Craigie R, Ditzler MA, Holliger P, DeStefano JJ. Selection of 2'-Deoxy-2'-Fluoroarabino Nucleic Acid (FANA) Aptamers that Bind HIV-1 Integrase with Picomolar Affinity. Acs Chemical Biology. PMID 31560515 DOI: 10.1021/Acschembio.9B00237  0.476
2019 Plebanek A, Larnerd C, Popović M, Wei C, Pohorille A, Ditzler MA. Big on Change, Small on Innovation: Evolutionary Consequences of RNA Sequence Duplication. Journal of Molecular Evolution. PMID 31435687 DOI: 10.1007/S00239-019-09906-3  0.762
2016 Stephenson JD, Popović M, Bristow TF, Ditzler MA. Evolution of ribozymes in the presence of a mineral surface. Rna (New York, N.Y.). PMID 27793980 DOI: 10.1261/Rna.057703.116  0.661
2015 Popovi? M, Fliss PS, Ditzler MA. In vitro evolution of distinct self-cleaving ribozymes in diverse environments. Nucleic Acids Research. PMID 26130717 DOI: 10.1093/Nar/Gkv648  0.522
2013 Whatley AS, Ditzler MA, Lange MJ, Biondi E, Sawyer AW, Chang JL, Franken JD, Burke DH. Potent Inhibition of HIV-1 Reverse Transcriptase and Replication by Nonpseudoknot, "UCAA-motif" RNA Aptamers. Molecular Therapy. Nucleic Acids. 2: e71. PMID 23385524 DOI: 10.1038/Mtna.2012.62  0.665
2013 Ditzler MA, Lange MJ, Bose D, Bottoms CA, Virkler KF, Sawyer AW, Whatley AS, Spollen W, Givan SA, Burke DH. High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase. Nucleic Acids Research. 41: 1873-84. PMID 23241386 DOI: 10.1093/Nar/Gks1190  0.756
2011 Ditzler MA, Bose D, Shkriabai N, Marchand B, Sarafianos SG, Kvaratskhelia M, Burke DH. Broad-spectrum aptamer inhibitors of HIV reverse transcriptase closely mimic natural substrates. Nucleic Acids Research. 39: 8237-47. PMID 21727088 DOI: 10.1093/Nar/Gkr381  0.646
2010 Abelson J, Blanco M, Ditzler MA, Fuller F, Aravamudhan P, Wood M, Villa T, Ryan DE, Pleiss JA, Maeder C, Guthrie C, Walter NG. Conformational dynamics of single pre-mRNA molecules during in vitro splicing. Nature Structural & Molecular Biology. 17: 504-12. PMID 20305654 DOI: 10.1038/Nsmb.1767  0.63
2010 Ditzler MA, Otyepka M, Sponer J, Walter NG. Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe in. Accounts of Chemical Research. 43: 40-7. PMID 19754142 DOI: 10.1021/Ar900093G  0.668
2009 Ditzler MA, Sponer J, Walter NG. Molecular dynamics suggest multifunctionality of an adenine imino group in acid-base catalysis of the hairpin ribozyme. Rna (New York, N.Y.). 15: 560-75. PMID 19223444 DOI: 10.1261/Rna.1416709  0.569
2008 Ditzler MA, Rueda D, Mo J, Håkansson K, Walter NG. A rugged free energy landscape separates multiple functional RNA folds throughout denaturation. Nucleic Acids Research. 36: 7088-99. PMID 18988629 DOI: 10.1093/Nar/Gkn871  0.749
2007 Ditzler MA, Alemán EA, Rueda D, Walter NG. Focus on function: single molecule RNA enzymology. Biopolymers. 87: 302-16. PMID 17685395 DOI: 10.1002/Bip.20819  0.738
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