Alex Hall - Publications

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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Brülisauer L, León-Sampedro R, Hall AR. Clinical antibiotic-resistance plasmids have small effects on biofilm formation and population growth in Escherichia coli in vitro. Plasmid. 128: 102706. PMID 37652194 DOI: 10.1016/j.plasmid.2023.102706  0.364
2023 Pathak A, Angst DC, León-Sampedro R, Hall AR. Antibiotic-degrading resistance changes bacterial community structure via species-specific responses. The Isme Journal. PMID 37380830 DOI: 10.1038/s41396-023-01465-2  0.313
2023 Benz F, Hall AR. Host-specific plasmid evolution explains the variable spread of clinical antibiotic-resistance plasmids. Proceedings of the National Academy of Sciences of the United States of America. 120: e2212147120. PMID 37023131 DOI: 10.1073/pnas.2212147120  0.375
2021 Allen RC, Pfrunder-Cardozo KR, Hall AR. Collateral Sensitivity Interactions between Antibiotics Depend on Local Abiotic Conditions. Msystems. e0105521. PMID 34846167 DOI: 10.1128/mSystems.01055-21  0.395
2021 O'Brien S, Baumgartner M, Hall AR. Species interactions drive the spread of ampicillin resistance in human-associated gut microbiota. Evolution, Medicine, and Public Health. 9: 256-266. PMID 34447576 DOI: 10.1093/emph/eoab020  0.429
2021 Bischofberger AM, Pfrunder Cardozo KR, Baumgartner M, Hall AR. Evolution of honey resistance in experimental populations of bacteria depends on the type of honey and has no major side effects for antibiotic susceptibility. Evolutionary Applications. 14: 1314-1327. PMID 34025770 DOI: 10.1111/eva.13200  0.477
2021 Letten AD, Baumgartner M, Pfrunder-Cardozo KR, Levine JM, Hall AR. Human-associated microbiota suppress invading bacteria even under disruption by antibiotics. The Isme Journal. PMID 33712700 DOI: 10.1038/s41396-021-00929-7  0.322
2021 Letten AD, Hall AR, Levine JM. Using ecological coexistence theory to understand antibiotic resistance and microbial competition. Nature Ecology & Evolution. PMID 33526890 DOI: 10.1038/s41559-020-01385-w  0.417
2020 Wendling CC, Refardt D, Hall AR. Fitness benefits to bacteria of carrying prophages and prophage-encoded antibiotic-resistance genes peak in different environments. Evolution; International Journal of Organic Evolution. PMID 33347602 DOI: 10.1111/evo.14153  0.375
2020 Baumgartner M, Bayer F, Pfrunder-Cardozo KR, Buckling A, Hall AR. Resident microbial communities inhibit growth and antibiotic-resistance evolution of Escherichia coli in human gut microbiome samples. Plos Biology. 18: e3000465. PMID 32310938 DOI: 10.1371/Journal.Pbio.3000465  0.416
2020 Bischofberger AM, Baumgartner M, Pfrunder Cardozo K, Allen RC, Hall AR. Associations Between Sensitivity to Antibiotics, Disinfectants, and Heavy Metals in Natural, Clinical and Laboratory Isolates of Escherichia coli. Environmental Microbiology. PMID 32162766 DOI: 10.1111/1462-2920.14986  0.425
2019 Scanlan JG, Hall AR, Scanlan PD. Impact of bile salts on coevolutionary dynamics between the gut bacterium Escherichia coli and its lytic phage PP01. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 31154089 DOI: 10.1016/j.meegid.2019.05.021  0.413
2019 Payne JL, Menardo F, Trauner A, Borrell S, Gygli SM, Loiseau C, Gagneux S, Hall AR. Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis. Plos Biology. 17: e3000265. PMID 31083647 DOI: 10.1371/journal.pbio.3000265  0.492
2018 Allen RC, Angst DC, Hall AR. Resistance gene carriage predicts growth in the absence of antibiotics for natural and clinical . Applied and Environmental Microbiology. PMID 30530714 DOI: 10.1128/AEM.02111-18  0.46
2017 Arias-Sánchez FI, Allen RC, Hall AR. Effects of prior exposure to antibiotics on bacterial adaptation to phages. Journal of Evolutionary Biology. PMID 29218855 DOI: 10.1111/jeb.13220  0.363
2017 Allen RC, Pfrunder-Cardozo KR, Meinel D, Egli A, Hall AR. Associations among Antibiotic and Phage Resistance Phenotypes in Natural and Clinical Escherichia coli Isolates. Mbio. 8. PMID 29089428 DOI: 10.1128/mBio.01341-17  0.454
2017 Allen RC, Engelstädter J, Bonhoeffer S, McDonald BA, Hall AR. Reversing resistance: different routes and common themes across pathogens. Proceedings. Biological Sciences. 284. PMID 28954914 DOI: 10.1098/Rspb.2017.1619  0.456
2016 Arias-Sánchez FI, Hall AR. Correction to 'Effects of antibiotic resistance alleles on bacterial evolutionary responses to viral parasites'. Biology Letters. 12. PMID 28120804 DOI: 10.1098/rsbl.2016.0759  0.479
2016 Scanlan PD, Hall AR, Buckling A. Parasite genetic distance and local adaptation in coevolving bacteria-bacteriophage populations. Molecular Ecology. PMID 27775190 DOI: 10.1111/Mec.13897  0.411
2016 Scanlan PD, Bischofberger AM, Hall AR. Modification of Escherichia coli-bacteriophage interactions by surfactants and antibiotics in vitro. Fems Microbiology Ecology. PMID 27737900 DOI: 10.1093/femsec/fiw211  0.322
2016 Arias-Sánchez FI, Hall AR. Effects of antibiotic resistance alleles on bacterial evolutionary responses to viral parasites. Biology Letters. 12. PMID 27194288 DOI: 10.1098/rsbl.2016.0064  0.566
2016 Hall AR, MacLean CR. Corrigendum: Epistasis buffers the fitness effects of rifampicin-resistance mutations in Pseudomonas aeruginosa. Evolution; International Journal of Organic Evolution. PMID 27061837 DOI: 10.1111/evo.12918  0.48
2015 Scanlan PD, Buckling A, Hall AR. Experimental evolution and bacterial resistance: (co)evolutionary costs and trade-offs as opportunities in phage therapy research. Bacteriophage. 5: e1050153. PMID 26459626 DOI: 10.1080/21597081.2015.1050153  0.436
2015 Hesse E, Best A, Boots M, Hall AR, Buckling A. Spatial heterogeneity lowers rather than increases host-parasite specialization. Journal of Evolutionary Biology. 28: 1682-90. PMID 26135011 DOI: 10.1111/Jeb.12689  0.358
2015 Hall AR, Angst DC, Schiessl KT, Ackermann M. Costs of antibiotic resistance - separating trait effects and selective effects. Evolutionary Applications. 8: 261-72. PMID 25861384 DOI: 10.1111/eva.12187  0.47
2015 Gorter FA, Hall AR, Buckling A, Scanlan PD. Parasite host range and the evolution of host resistance. Journal of Evolutionary Biology. 28: 1119-30. PMID 25851735 DOI: 10.1111/Jeb.12639  0.481
2015 Scanlan PD, Hall AR, Blackshields G, Friman VP, Davis MR, Goldberg JB, Buckling A. Coevolution with bacteriophages drives genome-wide host evolution and constrains the acquisition of abiotic-beneficial mutations. Molecular Biology and Evolution. 32: 1425-35. PMID 25681383 DOI: 10.1093/Molbev/Msv032  0.582
2015 Tazzyman SJ, Hall AR. Lytic phages obscure the cost of antibiotic resistance in Escherichia coli. The Isme Journal. 9: 809-20. PMID 25268496 DOI: 10.1038/Ismej.2014.176  0.517
2014 Lopez Pascua L, Hall AR, Best A, Morgan AD, Boots M, Buckling A. Higher resources decrease fluctuating selection during host-parasite coevolution. Ecology Letters. 17: 1380-8. PMID 25167763 DOI: 10.1111/Ele.12337  0.471
2013 Angst DC, Hall AR. The cost of antibiotic resistance depends on evolutionary history in Escherichia coli. Bmc Evolutionary Biology. 13: 163. PMID 23914906 DOI: 10.1186/1471-2148-13-163  0.527
2013 Hall AR. Genotype-by-environment interactions due to antibiotic resistance and adaptation in Escherichia coli. Journal of Evolutionary Biology. 26: 1655-64. PMID 23701170 DOI: 10.1111/jeb.12172  0.536
2013 Scanlan PD, Hall AR, Burlinson P, Preston G, Buckling A. No effect of host-parasite co-evolution on host range expansion. Journal of Evolutionary Biology. 26: 205-9. PMID 23167752 DOI: 10.1111/Jeb.12021  0.374
2012 Hall AR, De Vos D, Friman VP, Pirnay JP, Buckling A. Effects of sequential and simultaneous applications of bacteriophages on populations of Pseudomonas aeruginosa in vitro and in wax moth larvae. Applied and Environmental Microbiology. 78: 5646-52. PMID 22660719 DOI: 10.1128/Aem.00757-12  0.306
2012 Hall AR, Scanlan PD, Leggett HC, Buckling A. Multiplicity of infection does not accelerate infectivity evolution of viral parasites in laboratory microcosms. Journal of Evolutionary Biology. 25: 409-15. PMID 22168551 DOI: 10.1111/J.1420-9101.2011.02434.X  0.386
2011 Hall AR, MacLean RC. Epistasis buffers the fitness effects of rifampicin- resistance mutations in Pseudomonas aeruginosa. Evolution; International Journal of Organic Evolution. 65: 2370-9. PMID 21790582 DOI: 10.1111/j.1558-5646.2011.01302.x  0.555
2011 Hall AR, Scanlan PD, Morgan AD, Buckling A. Host-parasite coevolutionary arms races give way to fluctuating selection. Ecology Letters. 14: 635-42. PMID 21521436 DOI: 10.1111/J.1461-0248.2011.01624.X  0.426
2011 Hall AR, Iles JC, MacLean RC. The fitness cost of rifampicin resistance in Pseudomonas aeruginosa depends on demand for RNA polymerase. Genetics. 187: 817-22. PMID 21220359 DOI: 10.1534/genetics.110.124628  0.44
2011 Hall AR, Scanlan PD, Buckling A. Bacteria-phage coevolution and the emergence of generalist pathogens. The American Naturalist. 177: 44-53. PMID 21117957 DOI: 10.1086/657441  0.452
2011 Scanlan PD, Hall AR, Lopez-Pascua LD, Buckling A. Genetic basis of infectivity evolution in a bacteriophage. Molecular Ecology. 20: 981-9. PMID 21073584 DOI: 10.1111/J.1365-294X.2010.04903.X  0.453
2010 Maclean RC, Hall AR, Perron GG, Buckling A. The evolution of antibiotic resistance: insight into the roles of molecular mechanisms of resistance and treatment context. Discovery Medicine. 10: 112-8. PMID 20807471  0.445
2010 Perron GG, Hall AR, Buckling A. Hypermutability and compensatory adaptation in antibiotic-resistant bacteria. The American Naturalist. 176: 303-11. PMID 20624092 DOI: 10.1086/655217  0.533
2010 MacLean RC, Hall AR, Perron GG, Buckling A. The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts. Nature Reviews. Genetics. 11: 405-14. PMID 20479772 DOI: 10.1038/Nrg2778  0.435
2010 Hall AR, Griffiths VF, MacLean RC, Colegrave N. Mutational neighbourhood and mutation supply rate constrain adaptation in Pseudomonas aeruginosa. Proceedings. Biological Sciences / the Royal Society. 277: 643-50. PMID 19889704 DOI: 10.1098/rspb.2009.1630  0.492
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