Daehwan Kim - Publications

2013 University of Maryland, College Park, College Park, MD 

6/73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Kim D, Song L, Breitwieser FP, Salzberg SL. Centrifuge: rapid and sensitive classification of metagenomic sequences. Genome Research. PMID 27852649 DOI: 10.1101/Gr.210641.116  0.44
2016 Pertea M, Kim D, Pertea GM, Leek JT, Salzberg SL. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. Nature Protocols. 11: 1650-1667. PMID 27560171 DOI: 10.1038/Nprot.2016.095  0.6
2015 Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nature Methods. 12: 357-60. PMID 25751142 DOI: 10.1038/Nmeth.3317  0.88
2013 Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biology. 14: R36. PMID 23618408 DOI: 10.1186/Gb-2013-14-4-R36  0.88
2012 Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nature Protocols. 7: 562-78. PMID 22383036 DOI: 10.1038/Nprot.2012.016  0.88
2011 Kim D, Salzberg SL. TopHat-Fusion: an algorithm for discovery of novel fusion transcripts. Genome Biology. 12: R72. PMID 21835007 DOI: 10.1186/Gb-2011-12-8-R72  0.88
Low-probability matches
2017 Sun Z, Ke X, Salzberg SL, Kim D, Antonescu V, Cheng Y, Huang B, Song JH, Abraham JM, Ibrahim S, Tian H, Meltzer SJ. The novel fusion transcript NR5A2-KLHL29FT is generated by an insertion at the KLHL29 locus. Cancer. PMID 28081303 DOI: 10.1002/Cncr.30510  0.16
2019 Ko D, Park HS, Kim JY, Kim D, Lee T. Early experiences of endovascular aneurysm repair for ruptured abdominal aortic aneurysms. Annals of Surgical Treatment and Research. 96: 138-145. PMID 30838186 DOI: 10.4174/astr.2019.96.3.138  0.12
2015 Kim D, Park S, Jung YG, Roh S. In vitro culture of stem-like cells derived from somatic cell nuclear transfer bovine embryos of the Korean beef cattle species, HanWoo. Reproduction, Fertility, and Development. PMID 25966803 DOI: 10.1071/RD14071  0.12
2019 Kim D, Paggi JM, Park C, Bennett C, Salzberg SL. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nature Biotechnology. 37: 907-915. PMID 31375807 DOI: 10.1038/S41587-019-0201-4  0.08
2019 Eleshra A, Kim D, Park HS, Lee T. Access site pseudoaneurysms after endovascular intervention for peripheral arterial diseases. Annals of Surgical Treatment and Research. 96: 305-312. PMID 31183335 DOI: 10.4174/astr.2019.96.6.305  0.04
2018 Jung TW, Park HS, Choi GH, Kim D, Lee T. β-aminoisobutyric acid attenuates LPS-induced inflammation and insulin resistance in adipocytes through AMPK-mediated pathway. Journal of Biomedical Science. 25: 27. PMID 29592806 DOI: 10.1186/s12929-018-0431-7  0.04
2018 Kim J, Kim D. Effects of Fragmented Fe Intermetallic Compounds on Ductility in Al-Si-Mg Alloys. Journal of Nanoscience and Nanotechnology. 18: 2137-2139. PMID 29448730 DOI: 10.1166/jnn.2018.14980  0.04
2017 Jung TW, Park HS, Choi GH, Kim D, Lee T. CTRP9 Regulates Growth, Differentiation, and Apoptosis in Human Keratinocytes through TGFβ1-p38-Dependent Pathway. Molecules and Cells. PMID 29145717 DOI: 10.14348/molcells.2017.0097  0.04
2017 Pallavajjala A, Kim D, Li T, Ghiaur G, Jones RJ, Burns KH, Salzberg SL, Ning Y. Genomic characterization of chromosome translocations in patients with T/myeloid mixed-phenotype acute leukemia. Leukemia & Lymphoma. 1-8. PMID 28882084 DOI: 10.1080/10428194.2017.1372577  0.04
2017 Kim D, Sul H, Jung YG, Roh S. Holding of bovine blastocysts at suprazero temperatures using small molecules. Scientific Reports. 7: 9490. PMID 28842634 DOI: 10.1038/s41598-017-10014-9  0.04
2017 Kim D, You E, Jeong J, Ko P, Kim JW, Rhee S. DDR2 controls the epithelial-mesenchymal-transition-related gene expression via c-Myb acetylation upon matrix stiffening. Scientific Reports. 7: 6847. PMID 28754957 DOI: 10.1038/s41598-017-07126-7  0.04
2017 Park BM, Bak SS, Shin KO, Kim M, Kim D, Jung SH, Jeong S, Sung YK, Kim H. Promotion of hair growth by newly synthesized ceramide mimetic compound. Biochemical and Biophysical Research Communications. PMID 28711498 DOI: 10.1016/j.bbrc.2017.07.069  0.04
2017 Kim D, Jung YG, Roh S. Microarray analysis of embryo-derived bovine pluripotent cells: The vulnerable state of bovine embryonic stem cells. Plos One. 12: e0173278. PMID 28257460 DOI: 10.1371/journal.pone.0173278  0.04
2014 Shin SH, Kim D, Hwang J, Kim MK, Kim JC, Sung YK. OVO homolog-like 1, a target gene of the Wnt/β-catenin pathway, controls hair follicle neogenesis. The Journal of Investigative Dermatology. 134: 838-40. PMID 24126846 DOI: 10.1038/jid.2013.421  0.04
2014 Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. Erratum: Corrigendum: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Nature Protocols. 9: 2513-2513. DOI: 10.1038/Nprot1014-2513A  0.04
2013 Jang SM, Kim JW, Kim D, Kim CH, An JH, Choi KH, Rhee S. Sox4-mediated caldesmon expression facilitates differentiation of skeletal myoblasts. Journal of Cell Science. 126: 5178-88. PMID 24046453 DOI: 10.1242/jcs.131581  0.04
2011 Kim JB, Park YB, Kang SH, Lee MJ, Kim KC, Jeong HR, Kim DH, Yoon MH, Lee JB, Oh DH. Prevalence, genetic diversity, and antibiotic susceptibility of Cronobacter spp. (Enterobacter sakazakii) isolated from Sunshik, its ingredients and soils Food Science and Biotechnology. 20: 941-948. DOI: 10.1007/s10068-011-0130-6  0.04
2021 Kim D, Park H. Effects of a Cigarette Price Increase on the Smoking Behavior of Smokers and Non-smokers. American Journal of Health Behavior. 45: 205-215. PMID 33888182 DOI: 10.5993/AJHB.45.2.1  0.01
2021 Balderston S, Taulbee JJ, Celaya E, Fung K, Jiao A, Smith K, Hajian R, Gasiunas G, Kutanovas S, Kim D, Parkinson J, Dickerson K, Ripoll JJ, Peytavi R, Lu HW, et al. Discrimination of single-point mutations in unamplified genomic DNA via Cas9 immobilized on a graphene field-effect transistor. Nature Biomedical Engineering. PMID 33820980 DOI: 10.1038/s41551-021-00706-z  0.01
2021 Wong N, Kim D, Robinson Z, Huang C, Conboy IM. K-means quantization for a web-based open-source flow cytometry analysis platform. Scientific Reports. 11: 6735. PMID 33762594 DOI: 10.1038/s41598-021-86015-6  0.01
2020 Park I, Kim D. Automatic Sclerosant Injection Technique of Mechanochemical Ablation with ClariVein Using a Syringe Pump for the Treatment of Varicose Veins. Vascular Specialist International. 36: 198-200. PMID 32990257 DOI: 10.5758/vsi.200053  0.01
2020 Choe D, Song SM, Shin CS, Johnston TV, Ahn HJ, Kim D, Ku S. Production and Characterization of Anti-Inflammatory Pigment Derivatives. Foods (Basel, Switzerland). 9. PMID 32630165 DOI: 10.3390/Foods9070858  0.01
2020 Ladeira Ázar RIS, Bordignon-Junior SE, Laufer C, Specht J, Ferrier D, Kim D. Effect of Lignin Content on Cellulolytic Saccharification of Liquid Hot Water Pretreated Sugarcane Bagasse. Molecules (Basel, Switzerland). 25. PMID 32023910 DOI: 10.3390/molecules25030623  0.01
2020 Kim Y, Kim B, Kim K, Kim D, Yun H, Kwak S, Kang K, Cho W, Moh A, Choi O, Yoon M. Safety Assessment of Biogenic Amines in School-Meal Fishery Products Journal of Food Hygiene and Safety. 35: 125-135. DOI: 10.13103/jfhs.2020.35.2.125  0.01
2019 Heo Y, Park HS, Shin CS, Yoo KC, Kim D, Lee T. Successful Treatment of Life-Threatening Small Bowel Bleeding With Thalidomide After Living Donor Kidney Transplantation: A Case Report. Transplantation Proceedings. PMID 31623898 DOI: 10.1016/j.transproceed.2019.07.009  0.01
2019 Park I, Kim D. Correlation Between the Immediate Remnant Stump Length and Vein Diameter After Cyanoacrylate Closure Using the VenaSeal System During Treatment of an Incompetent Great Saphenous Vein. Vascular and Endovascular Surgery. 1538574419879563. PMID 31581906 DOI: 10.1177/1538574419879563  0.01
2019 Woo HY, Kim SM, Kim D, Chung JK, Jung IM. Outcome of ClosureFAST radiofrequency ablation for large-diameter incompetent great saphenous vein. Annals of Surgical Treatment and Research. 96: 313-318. PMID 31183336 DOI: 10.4174/astr.2019.96.6.313  0.01
2019 Kim D. The Effect of Becoming Disabled on the Subjective Well-Being of Religious and Nonreligious People. Journal of Religion and Health. PMID 30949821 DOI: 10.1007/s10943-019-00808-8  0.01
2019 Kim SM, Jung IM, Kim D, Lee JP, So YH. Effect of inflow arterial calcification on arteriovenous fistula maturation. Annals of Vascular Surgery. PMID 30769062 DOI: 10.1016/j.avsg.2018.10.057  0.01
2019 Kim D, Lee W. Simultaneous Saccharification and Fermentation with Mutant Pichia stipitis Co-fermenting Cellobiose and Xylose Ksbb Journal. 34: 284-290. DOI: 10.7841/ksbbj.2019.34.4.284  0.01
2018 Mehdipour M, Liu Y, Liu C, Kumar B, Kim D, Gathwala R, Conboy IM. Key Age-Imposed Signaling Changes That Are Responsible for the Decline of Stem Cell Function. Sub-Cellular Biochemistry. 90: 119-143. PMID 30779008 DOI: 10.1007/978-981-13-2835-0_5  0.01
2018 Beri P, Matte BF, Fattet L, Kim D, Yang J, Engler AJ. Biomaterials to model and measure epithelial cancers. Nature Reviews. Materials. 3: 418-430. PMID 30416759 DOI: 10.1038/S41578-018-0051-6  0.01
2018 Kim D, Kim HM, Kim HK, Park SR, Lee KS, Kim KH. ThunderPunch: A bare-hand, gesture-based, large interactive display interface with upper-body-part detection in a top view. Ieee Computer Graphics and Applications. 38: 100-111. PMID 30273130 DOI: 10.1109/MCG.2018.053491734  0.01
2018 Hwang J, Lee S, Kim D, Han G, Soung NK, Cha-Molstad H, Lee KH, Ryoo IJ, Ahn MJ, Kim ST, Lee MJ, Yoo YD, Lee HG, Hong JT, Kim H, et al. Peptide nucleic acid-probe based analysis to detect filaggrin mutations in atopic dermatitis patients. Experimental Dermatology. PMID 30092122 DOI: 10.1111/Exd.13765  0.01
2018 Park HS, Choi GH, Kim D, Jung TW, Jung IM, Chung JK, Lee T. Use of Self-Assembling Peptides to Enhance Stem Cell Function for Therapeutic Angiogenesis. Stem Cells International. 2018: 4162075. PMID 30008751 DOI: 10.1155/2018/4162075  0.01
2018 Jung TW, Park HS, Choi GH, Kim D, Ahn SH, Kim DS, Lee T, Jeong JH. Maresin 1 attenuates pro-inflammatory reactions and ER stress in HUVECs via PPARα-mediated pathway. Molecular and Cellular Biochemistry. PMID 29971543 DOI: 10.1007/s11010-018-3392-y  0.01
2018 Kang JY, Kim JY, Kim KB, Park JW, Cho H, Hahm JY, Chae YC, Kim D, Kook H, Rhee S, Ha NC, Seo SB. KDM2B is a histone H3K79 demethylase and induces transcriptional repression via sirtuin-1-mediated chromatin silencing. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. fj201800242R. PMID 29763382 DOI: 10.1096/fj.201800242R  0.01
2018 Jung TW, Park HS, Choi GH, Kim D, Jeong JH, Lee T. Chitinase-3-like protein 1 ameliorates atherosclerotic responses via PPARδ-mediated suppression of inflammation and ER stress. Journal of Cellular Biochemistry. PMID 29737637 DOI: 10.1002/jcb.26873  0.01
2018 Jeong J, Keum S, Kim D, You E, Ko P, Lee J, Kim J, Kim JW, Rhee S. Spindle pole body component 25 homolog expressed by ECM stiffening is required for lung cancer cell proliferation. Biochemical and Biophysical Research Communications. PMID 29709477 DOI: 10.1016/j.bbrc.2018.04.205  0.01
2018 Ross KC, Chin KF, Kim D, Marion CD, Yen TJ, Bhattacharjee V. Methotrexate sensitizes drug-resistant metastatic melanoma cells toV600E inhibitors dabrafenib and encorafenib. Oncotarget. 9: 13324-13336. PMID 29568360 DOI: 10.18632/oncotarget.24341  0.01
2018 Kim D, Ku S. Bacillus Cellulase Molecular Cloning, Expression, and Surface Display on the Outer Membrane of Escherichia coli. Molecules (Basel, Switzerland). 23. PMID 29495265 DOI: 10.3390/molecules23020503  0.01
2018 Kim D. Physico-Chemical Conversion of Lignocellulose: Inhibitor Effects and Detoxification Strategies: A Mini Review. Molecules (Basel, Switzerland). 23. PMID 29389875 DOI: 10.3390/molecules23020309  0.01
2018 Kim D, Ku S. Beneficial Effects of Monascus sp. KCCM 10093 Pigments and Derivatives: A Mini Review. Molecules (Basel, Switzerland). 23. PMID 29301350 DOI: 10.3390/molecules23010098  0.01
2017 Kim D, Orrego D, Ximenes EA, Ladisch MR. Cellulose conversion of corn pericarp without pretreatment. Bioresource Technology. 245: 511-517. PMID 28898851 DOI: 10.1016/J.Biortech.2017.08.156  0.01
2017 Kim D, Kim H, Kim K, Roh S. The Protective Effect of Indole-3-Acetic Acid (IAA) on H2O2-Damaged Human Dental Pulp Stem Cells Is Mediated by the AKT Pathway and Involves Increased Expression of the Transcription Factor Nuclear Factor-Erythroid 2-Related Factor 2 (Nrf2) and Its Downstream Target Heme Oxygenase 1 (HO-1). Oxidative Medicine and Cellular Longevity. 2017: 8639485. PMID 28694916 DOI: 10.1155/2017/8639485  0.01
2017 Kim D, Chung JK, Park HS, Jung IM, Lee T. Early Experiences of Sandwich Technique to Preserve Pelvic Circulation during Endovascular Aneurysm Repair. Vascular Specialist International. 33: 72-80. PMID 28690999 DOI: 10.5758/vsi.2017.33.2.72  0.01
2017 Chung S, Lee J, Lee Y, Park HY, Kim D. Characteristics of the similarity index in a Korean medical journal. Korean Journal of Anesthesiology. 70: 327-334. PMID 28580084 DOI: 10.4097/kjae.2017.70.3.327  0.01
2016 Kim D, Ximenes EA, Nichols NN, Cao G, Frazer SE, Ladisch MR. Maleic acid treatment of biologically detoxified corn stover liquor. Bioresource Technology. 216: 437-445. PMID 27262718 DOI: 10.1016/J.Biortech.2016.05.086  0.01
2016 Kim D, Rhee S. Matrix metalloproteinase‑2 regulates MDA‑MB‑231 breast cancer cell invasion induced by active mammalian diaphanous-related formin 1. Molecular Medicine Reports. PMID 27177153 DOI: 10.3892/mmr.2016.5282  0.01
2016 Kim D, Jung J, You E, Ko P, Oh S, Rhee S. mDia1 regulates breast cancer invasion by controlling membrane type 1-matrix metalloproteinase localization. Oncotarget. PMID 26893363 DOI: 10.18632/oncotarget.7429  0.01
2016 Ko P, Kim D, You E, Jung J, Oh S, Kim J, Lee KH, Rhee S. Extracellular Matrix Rigidity-dependent Sphingosine-1-phosphate Secretion Regulates Metastatic Cancer Cell Invasion and Adhesion. Scientific Reports. 6: 21564. PMID 26877098 DOI: 10.1038/srep21564  0.01
2015 Park S, Kim D, Jung YG, Roh S. Thiazovivin, a Rho kinase inhibitor, improves stemness maintenance of embryo-derived stem-like cells under chemically defined culture conditions in cattle. Animal Reproduction Science. 161: 47-57. PMID 26307658 DOI: 10.1016/j.anireprosci.2015.08.003  0.01
2015 Kim D, Yeom JH, Lee B, Lee K, Bae J, Rhee S. Inhibition of discoidin domain receptor 2-mediated lung cancer cells progression by gold nanoparticle-aptamer-assisted delivery of peptides containing transmembrane-juxtamembrane 1/2 domain. Biochemical and Biophysical Research Communications. 464: 392-5. PMID 26067556 DOI: 10.1016/j.bbrc.2015.06.044  0.01
2015 Cao G, Ximenes E, Nichols NN, Frazer SE, Kim D, Cotta MA, Ladisch M. Bioabatement with hemicellulase supplementation to reduce enzymatic hydrolysis inhibitors. Bioresource Technology. 190: 412-5. PMID 25958134 DOI: 10.1016/J.Biortech.2015.04.064  0.01
2015 Kang HM, Sohn I, Kim S, Kim D, Jung J, Jeong JW, Park C. Optical measurement of mouse strain differences in cerebral blood flow using indocyanine green. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 35: 912-6. PMID 25833343 DOI: 10.1038/jcbfm.2015.50  0.01
2015 Kim D, Kim SY, Mun SK, Rhee S, Kim BJ. Epidermal growth factor improves the migration and contractility of aged fibroblasts cultured on 3D collagen matrices. International Journal of Molecular Medicine. 35: 1017-25. PMID 25647660 DOI: 10.3892/ijmm.2015.2088  0.01
2014 Kim D, Kim J, Hyun H, Kim K, Roh S. A nanoscale ridge/groove pattern arrayed surface enhances adipogenic differentiation of human supernumerary tooth-derived dental pulp stem cells in vitro. Archives of Oral Biology. 59: 765-74. PMID 24837475 DOI: 10.1016/j.archoralbio.2014.04.014  0.01
2014 Kim D, Ko P, You E, Rhee S. The intracellular juxtamembrane domain of discoidin domain receptor 2 (DDR2) is essential for receptor activation and DDR2-mediated cancer progression. International Journal of Cancer. Journal International Du Cancer. 135: 2547-57. PMID 24740739 DOI: 10.1002/ijc.28901  0.01
2014 Kim KB, Kim DW, Park JW, Jeon YJ, Kim D, Rhee S, Chae JI, Seo SB. Inhibition of Ku70 acetylation by INHAT subunit SET/TAF-Iβ regulates Ku70-mediated DNA damage response. Cellular and Molecular Life Sciences : Cmls. 71: 2731-45. PMID 24305947 DOI: 10.1007/s00018-013-1525-8  0.01
2013 Kim D, You E, Min NY, Lee KH, Kim HK, Rhee S. Discoidin domain receptor 2 regulates the adhesion of fibroblasts to 3D collagen matrices International Journal of Molecular Medicine. 31: 1113-1118. PMID 23546533 DOI: 10.3892/ijmm.2013.1320  0.01
2012 Kim D, You E, Rhee S. Dynein regulates cell migration depending on substrate rigidity International Journal of Molecular Medicine. 29: 440-446. PMID 22200735 DOI: 10.3892/ijmm.2011.867  0.01
2011 Kim D, Leigh JP. Are meals at full-service and fast-food restaurants "normal" or "inferior"? Population Health Management. 14: 307-15. PMID 21827320 DOI: 10.1089/pop.2010.0071  0.01
2010 Kim D, Leigh JP. Estimating the effects of wages on obesity. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 52: 495-500. PMID 20431413 DOI: 10.1097/JOM.0b013e3181dbc867  0.01
2010 Jang SM, Kim JW, Kim CH, Kim D, Rhee S, Choi KH. p19(ras) Represses proliferation of non-small cell lung cancer possibly through interaction with Neuron-Specific Enolase (NSE). Cancer Letters. 289: 91-8. PMID 19713034 DOI: 10.1016/j.canlet.2009.08.005  0.01
2006 Kim D, Petersen JL, Wang KK. Synthesis of bowl-shaped polycyclic aromatic hydrocarbons via palladium-catalyzed intramolecular arylation reactions. Organic Letters. 8: 2313-6. PMID 16706514 DOI: 10.1021/ol0605676  0.01
2003 Yoon KH, Kim D, Sohn S, Lee WS. Segmented heterochromia in scalp hair. Journal of the American Academy of Dermatology. 49: 1148-50. PMID 14639404 DOI: 10.1016/S0190  0.01
2002 Kim D, Kang WH. Role of dermal melanocytes in cutaneous pigmentation of stasis dermatitis: a histopathological study of 20 cases. Journal of Korean Medical Science. 17: 648-54. PMID 12378017  0.01
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