| Year |
Citation |
Score |
| 2022 |
Lu J, Rincon N, Wood DE, Breitwieser FP, Pockrandt C, Langmead B, Salzberg SL, Steinegger M. Metagenome analysis using the Kraken software suite. Nature Protocols. PMID 36171387 DOI: 10.1038/s41596-022-00738-y |
0.498 |
|
| 2019 |
Breitwieser FP, Salzberg SL. Pavian: Interactive analysis of metagenomics data for microbiome studies and pathogen identification. Bioinformatics (Oxford, England). PMID 31553437 DOI: 10.1093/bioinformatics/btz715 |
0.531 |
|
| 2019 |
Bewick S, Gurarie E, Weissman JL, Beattie J, Davati C, Flint R, Thielen P, Breitwieser F, Karig D, Fagan WF. Trait-based analysis of the human skin microbiome. Microbiome. 7: 101. PMID 31277701 DOI: 10.1186/S40168-019-0698-2 |
0.354 |
|
| 2019 |
Breitwieser FP, Pertea M, Zimin A, Salzberg SL. Human contamination in bacterial genomes has created thousands of spurious proteins. Genome Research. PMID 31064768 DOI: 10.1101/Gr.245373.118 |
0.687 |
|
| 2018 |
Pertea M, Shumate A, Pertea G, Varabyou A, Breitwieser FP, Chang YC, Madugundu AK, Pandey A, Salzberg SL. CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise. Genome Biology. 19: 208. PMID 30486838 DOI: 10.1186/S13059-018-1590-2 |
0.642 |
|
| 2018 |
Li Z, Breitwieser FP, Lu J, Jun AS, Asnaghi L, Salzberg SL, Eberhart CG. Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing. Investigative Ophthalmology & Visual Science. 59: 280-288. PMID 29340642 DOI: 10.1167/Iovs.17-21617 |
0.593 |
|
| 2017 |
Breitwieser FP, Lu J, Salzberg SL. A review of methods and databases for metagenomic classification and assembly. Briefings in Bioinformatics. PMID 29028872 DOI: 10.1093/bib/bbx120 |
0.495 |
|
| 2017 |
Kandathil AJ, Breitwieser FP, Sachithanandham J, Robinson M, Mehta SH, Timp W, Salzberg SL, Thomas DL, Balagopal A. Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs. Annals of Internal Medicine. PMID 28586923 DOI: 10.7326/M17-0085 |
0.54 |
|
| 2017 |
Lu J, Breitwieser FP, Thielen P, Salzberg SL. Bracken: estimating species abundance in metagenomics data Peerj Computer Science. 3: e104. DOI: 10.7717/PEERJ-CS.104 |
0.591 |
|
| 2016 |
Kim D, Song L, Breitwieser FP, Salzberg SL. Centrifuge: rapid and sensitive classification of metagenomic sequences. Genome Research. PMID 27852649 DOI: 10.1101/Gr.210641.116 |
0.672 |
|
| 2016 |
Salzberg SL, Breitwieser FP, Kumar A, Hao H, Burger P, Rodriguez FJ, Lim M, Quiñones-Hinojosa A, Gallia GL, Tornheim JA, Melia MT, Sears CL, Pardo CA. Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system. Neurology® Neuroimmunology & Neuroinflammation. 3: e251. PMID 27340685 DOI: 10.1212/Nxi.0000000000000251 |
0.489 |
|
| 2015 |
Breitwieser FP, Pardo CA, Salzberg SL. Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection. F1000research. 4: 180. PMID 26309730 DOI: 10.12688/f1000research.6743.2 |
0.545 |
|
| 2015 |
Breitwieser FP, Pardo CA, Salzberg SL. Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection F1000research. 4. DOI: 10.12688/f1000research.6743.2 |
0.331 |
|
| 2010 |
Ubaida Mohien C, Hartler J, Breitwieser F, Rix U, Remsing Rix L, Winter GE, Thallinger GG, Bennett KL, Superti-Furga G, Trajanoski Z, Colinge J. MASPECTRAS 2: An integration and analysis platform for proteomic data. Proteomics. 10: 2719-22. PMID 20455215 DOI: 10.1002/Pmic.201000075 |
0.313 |
|
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