Florian Breitwieser - Publications

Affiliations: 
2015-2019 Institute of Genetic Medicine Johns Hopkins University, Baltimore, MD 

10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Breitwieser FP, Salzberg SL. Pavian: Interactive analysis of metagenomics data for microbiome studies and pathogen identification. Bioinformatics (Oxford, England). PMID 31553437 DOI: 10.1093/bioinformatics/btz715  0.76
2019 Breitwieser FP, Pertea M, Zimin A, Salzberg SL. Human contamination in bacterial genomes has created thousands of spurious proteins. Genome Research. PMID 31064768 DOI: 10.1101/gr.245373.118  0.76
2018 Pertea M, Shumate A, Pertea G, Varabyou A, Breitwieser FP, Chang YC, Madugundu AK, Pandey A, Salzberg SL. CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise. Genome Biology. 19: 208. PMID 30486838 DOI: 10.1186/s13059-018-1590-2  0.76
2018 Li Z, Breitwieser FP, Lu J, Jun AS, Asnaghi L, Salzberg SL, Eberhart CG. Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing. Investigative Ophthalmology & Visual Science. 59: 280-288. PMID 29340642 DOI: 10.1167/iovs.17-21617  0.76
2017 Breitwieser FP, Lu J, Salzberg SL. A review of methods and databases for metagenomic classification and assembly. Briefings in Bioinformatics. PMID 29028872 DOI: 10.1093/bib/bbx120  0.76
2017 Kandathil AJ, Breitwieser FP, Sachithanandham J, Robinson M, Mehta SH, Timp W, Salzberg SL, Thomas DL, Balagopal A. Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs. Annals of Internal Medicine. PMID 28586923 DOI: 10.7326/M17-0085  0.76
2016 Kim D, Song L, Breitwieser FP, Salzberg SL. Centrifuge: rapid and sensitive classification of metagenomic sequences. Genome Research. PMID 27852649 DOI: 10.1101/gr.210641.116  0.76
2016 Salzberg SL, Breitwieser FP, Kumar A, Hao H, Burger P, Rodriguez FJ, Lim M, Quiñones-Hinojosa A, Gallia GL, Tornheim JA, Melia MT, Sears CL, Pardo CA. Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system. Neurology® Neuroimmunology & Neuroinflammation. 3: e251. PMID 27340685 DOI: 10.1212/NXI.0000000000000251  0.76
2015 Breitwieser FP, Pardo CA, Salzberg SL. Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection. F1000research. 4: 180. PMID 26309730 DOI: 10.12688/f1000research.6743.2  0.76
2014 Gridling M, Ficarro SB, Breitwieser FP, Song L, Parapatics K, Colinge J, Haura EB, Marto JA, Superti-Furga G, Bennett KL, Rix U. Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics. Molecular Cancer Therapeutics. 13: 2751-62. PMID 25189542 DOI: 10.1158/1535-7163.MCT-14-0152  0.4
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