Joe A Kaczmarski - Publications

Affiliations: 
Australian National University, Acton, Australian Capital Territory, Australia 
Area:
Protein chemistry, structural biology

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zhang S, Zhang L, Greule A, Tailhades J, Marschall E, Prasongpholchai P, Leng DJ, Zhang J, Zhu J, Kaczmarski JA, Schittenhelm RB, Einsle O, Jackson CJ, Alberti F, Bechthold A, et al. P450-mediated dehydrotyrosine formation during WS9326 biosynthesis proceeds dehydrogenation of a specific acylated dipeptide substrate. Acta Pharmaceutica Sinica. B. 13: 3561-3574. PMID 37655329 DOI: 10.1016/j.apsb.2023.03.021  0.517
2023 Ho YTC, Kaczmarski JA, Tailhades J, Izoré T, Steer DL, Schittenhelm RB, Tosin M, Jackson CJ, Cryle MJ. Not always an innocent bystander: the impact of stabilised phosphopantetheine moieties when studying nonribosomal peptide biosynthesis. Chemical Communications (Cambridge, England). PMID 37310188 DOI: 10.1039/d3cc01578e  0.553
2022 East NJ, Clifton BE, Jackson CJ, Kaczmarski JA. The role of oligomerization in the optimization of cyclohexadienyl dehydratase conformational dynamics and catalytic activity. Protein Science : a Publication of the Protein Society. e4510. PMID 36382881 DOI: 10.1002/pro.4510  0.549
2022 Joho Y, Vongsouthi V, Spence MA, Ton J, Gomez C, Tan LL, Kaczmarski JA, Caputo AT, Royan S, Jackson CJ, Ardevol A. Ancestral Sequence Reconstruction Identifies Structural Changes Underlying the Evolution of PETase and Variants with Improved Stability and Activity. Biochemistry. PMID 35951410 DOI: 10.1021/acs.biochem.2c00323  0.521
2022 Ergun Ayva C, Fiorito MM, Guo Z, Edwardraja S, Kaczmarski JA, Gagoski D, Walden P, Johnston WA, Jackson CJ, Nebl T, Alexandrov K. Exploring Performance Parameters of Artificial Allosteric Protein Switches. Journal of Molecular Biology. 167678. PMID 35709893 DOI: 10.1016/j.jmb.2022.167678  0.575
2021 Ford DJ, Duggan NM, Fry SE, Ripoll-Rozada J, Agten SM, Liu W, Corcilius L, Hackeng TM, van Oerle R, Spronk HMH, Ashhurst AS, Mini Sasi V, Kaczmarski JA, Jackson CJ, Pereira PJB, et al. Potent Cyclic Peptide Inhibitors of FXIIa Discovered by mRNA Display with Genetic Code Reprogramming. Journal of Medicinal Chemistry. PMID 34044534 DOI: 10.1021/acs.jmedchem.1c00651  0.51
2021 Spence MA, Kaczmarski JA, Saunders JW, Jackson CJ. Ancestral sequence reconstruction for protein engineers. Current Opinion in Structural Biology. 69: 131-141. PMID 34023793 DOI: 10.1016/j.sbi.2021.04.001  0.498
2021 Izoré T, Candace Ho YT, Kaczmarski JA, Gavriilidou A, Chow KH, Steer DL, Goode RJA, Schittenhelm RB, Tailhades J, Tosin M, Challis GL, Krenske EH, Ziemert N, Jackson CJ, Cryle MJ. Structures of a non-ribosomal peptide synthetase condensation domain suggest the basis of substrate selectivity. Nature Communications. 12: 2511. PMID 33947858 DOI: 10.1038/s41467-021-22623-0  0.579
2021 Chatterjee D, Lewis FJ, Sutton HJ, Kaczmarski JA, Gao X, Cai Y, McNamara HA, Jackson CJ, Cockburn IA. Avid binding by B cells to the Plasmodium circumsporozoite protein repeat suppresses responses to protective subdominant epitopes. Cell Reports. 35: 108996. PMID 33852850 DOI: 10.1016/j.celrep.2021.108996  0.505
2020 Kaczmarski JA, Mahawaththa MC, Feintuch A, Clifton BE, Adams LA, Goldfarb D, Otting G, Jackson CJ. Altered conformational sampling along an evolutionary trajectory changes the catalytic activity of an enzyme. Nature Communications. 11: 5945. PMID 33230119 DOI: 10.1038/s41467-020-19695-9  0.566
2019 Kaczmarski JA, Hong N, Mukherjee B, Wey LT, Rourke L, Förster B, Peat TS, Price GD, Jackson CJ. Structural basis for the allosteric regulation of the SbtA bicarbonate transporter by the P-like protein, SbtB, from sp. PCC7001. Biochemistry. PMID 31746199 DOI: 10.1021/Acs.Biochem.9B00880  0.561
2019 Greule A, Izoré T, Iftime D, Tailhades J, Schoppet M, Zhao Y, Peschke M, Ahmed I, Kulik A, Adamek M, Goode RJA, Schittenhelm RB, Kaczmarski JA, Jackson CJ, Ziemert N, et al. Kistamicin biosynthesis reveals the biosynthetic requirements for production of highly crosslinked glycopeptide antibiotics. Nature Communications. 10: 2613. PMID 31197182 DOI: 10.1038/S41467-019-10384-W  0.573
2019 Kaczmarski JA, Mitchell JA, Spence MA, Vongsouthi V, Jackson CJ. Structural and evolutionary approaches to the design and optimization of fluorescence-based small molecule biosensors. Current Opinion in Structural Biology. 57: 31-38. PMID 30825845 DOI: 10.1016/J.Sbi.2019.01.013  0.505
2019 Izoré T, Tailhades J, Hansen MH, Kaczmarski JA, Jackson CJ, Cryle MJ. nonribosomal peptide synthetase Ebony encodes an atypical condensation domain. Proceedings of the National Academy of Sciences of the United States of America. PMID 30705105 DOI: 10.1073/Pnas.1811194116  0.597
2018 Clifton BE, Kaczmarski JA, Carr PD, Gerth ML, Tokuriki N, Jackson CJ. Evolution of cyclohexadienyl dehydratase from an ancestral solute-binding protein. Nature Chemical Biology. PMID 29686357 DOI: 10.1038/S41589-018-0043-2  0.591
2017 Fisher CR, Sutton HJ, Kaczmarski JA, McNamara HA, Clifton B, Mitchell J, Cai Y, Dups JN, D'Arcy NJ, Singh M, Chuah A, Peat TS, Jackson CJ, Cockburn IA. T-dependent B cell responses to Plasmodium induce antibodies that form a high-avidity multivalent complex with the circumsporozoite protein. Plos Pathogens. 13: e1006469. PMID 28759640 DOI: 10.1371/Journal.Ppat.1006469  0.527
2014 Kaczmarski JA, Corry B. Investigating the size and dynamics of voltage-gated sodium channel fenestrations. Channels (Austin, Tex.). 8: 264-77. PMID 24632677 DOI: 10.4161/Chan.28136  0.548
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