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Heikki Takala - Publications

Affiliations: 
University of Jyvaskyla, Jyväskylä, Finland 
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kurttila M, Rumfeldt J, Takala H, Ihalainen JA. The interconnecting hairpin extension "arm": An essential allosteric element of phytochrome activity. Structure (London, England : 1993). PMID 37392739 DOI: 10.1016/j.str.2023.06.007  0.763
2022 Wahlgren WY, Claesson E, Tuure I, Trillo-Muyo S, Bódizs S, Ihalainen JA, Takala H, Westenhoff S. Structural mechanism of signal transduction in a phytochrome histidine kinase. Nature Communications. 13: 7673. PMID 36509762 DOI: 10.1038/s41467-022-34893-3  0.439
2022 Kurttila M, Etzl S, Rumfeldt J, Takala H, Galler N, Winkler A, Ihalainen JA. The structural effect between the output module and chromophore-binding domain is a two-way street via the hairpin extension. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. PMID 35984631 DOI: 10.1007/s43630-022-00265-5  0.738
2022 Lehtivuori H, Rumfeldt J, Mustalahti S, Kurkinen S, Takala H. Conserved histidine and tyrosine determine spectral responses through the water network in Deinococcus radiodurans phytochrome. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. PMID 35906527 DOI: 10.1007/s43630-022-00272-6  0.724
2021 Rumfeldt J, Kurttila M, Takala H, Ihalainen JA. The hairpin extension controls solvent access to the chromophore binding pocket in a bacterial phytochrome: a UV-vis absorption spectroscopy study. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 20: 1173-1181. PMID 34460093 DOI: 10.1007/s43630-021-00090-2  0.736
2021 Cellini A, Yuan Wahlgren W, Henry L, Pandey S, Ghosh S, Castillon L, Claesson E, Takala H, Kübel J, Nimmrich A, Kuznetsova V, Nango E, Iwata S, Owada S, Stojković EA, et al. The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature. Acta Crystallographica. Section D, Structural Biology. 77: 1001-1009. PMID 34342273 DOI: 10.1107/S2059798321005830  0.736
2021 Multamäki E, Nanekar R, Morozov D, Lievonen T, Golonka D, Wahlgren WY, Stucki-Buchli B, Rossi J, Hytönen VP, Westenhoff S, Ihalainen JA, Möglich A, Takala H. Comparative analysis of two paradigm bacteriophytochromes reveals opposite functionalities in two-component signaling. Nature Communications. 12: 4394. PMID 34285211 DOI: 10.1038/s41467-021-24676-7  0.759
2021 Kurttila M, Stucki-Buchli B, Rumfeldt J, Schroeder L, Häkkänen H, Liukkonen A, Takala H, Kottke T, Ihalainen JA. Site-by-site tracking of signal transduction in an azidophenylalanine-labeled bacteriophytochrome with step-scan FTIR spectroscopy. Physical Chemistry Chemical Physics : Pccp. 23: 5615-5628. PMID 33656023 DOI: 10.1039/d0cp06553f  0.727
2020 Takala H, Edlund P, Ihalainen JA, Westenhoff S. Tips and turns of bacteriophytochrome photoactivation. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 19: 1488-1510. PMID 33107538 DOI: 10.1039/d0pp00117a  0.457
2020 Claesson E, Wahlgren WY, Takala H, Pandey S, Castillon L, Kuznetsova V, Henry L, Panman M, Carrillo M, Kübel J, Nanekar R, Isaksson L, Nimmrich A, Cellini A, Morozov D, et al. The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser. Elife. 9. PMID 32228856 DOI: 10.7554/Elife.53514  0.733
2020 Claesson E, Wahlgren WY, Takala H, Pandey S, Castillon L, Kuznetsova V, Henry L, Panman M, Carrillo M, Kübel J, Nanekar R, Isaksson L, Nimmrich A, Cellini A, Morozov D, et al. Author response: The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser Elife. DOI: 10.7554/Elife.53514.Sa2  0.737
2019 Rumfeldt JA, Takala H, Liukkonen A, Ihalainen JA. UV-Vis Spectroscopy Reveals a Correlation Between Y263 and BV Protonation States in Bacteriophytochromes. Photochemistry and Photobiology. 95: 969-979. PMID 30843203 DOI: 10.1111/Php.13095  0.735
2018 Woitowich NC, Halavaty AS, Waltz P, Kupitz C, Valera J, Tracy G, Gallagher KD, Claesson E, Nakane T, Pandey S, Nelson G, Tanaka R, Nango E, Mizohata E, Owada S, ... ... Takala H, et al. Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome. Iucrj. 5: 619-634. PMID 30224965 DOI: 10.1107/S2052252518010631  0.535
2018 Lenngren N, Edlund P, Takala H, Stucki-Buchli B, Rumfeldt J, Peshev I, Häkkänen H, Westenhoff S, Ihalainen JA. Coordination of the biliverdin D-ring in bacteriophytochromes. Physical Chemistry Chemical Physics : Pccp. 20: 18216-18225. PMID 29938729 DOI: 10.1039/C8Cp01696H  0.729
2018 Takala H, Lehtivuori H, Berntsson O, Hughes A, Nanekar R, Niebling S, Panman M, Henry L, Menzel A, Westenhoff S, Ihalainen JA. On the (un)coupling of the chromophore, tongue interactions and overall conformation in a bacterial phytochrome. The Journal of Biological Chemistry. PMID 29622676 DOI: 10.1074/Jbc.Ra118.001794  0.787
2017 Berntsson O, Diensthuber RP, Panman MR, Björling A, Gustavsson E, Hoernke M, Hughes AJ, Henry L, Niebling S, Takala H, Ihalainen JA, Newby G, Kerruth S, Heberle J, Liebi M, et al. Sequential conformational transitions and α-helical supercoiling regulate a sensor histidine kinase. Nature Communications. 8: 284. PMID 28819239 DOI: 10.1038/S41467-017-00300-5  0.404
2016 Edlund P, Takala H, Claesson E, Henry L, Dods R, Lehtivuori H, Panman M, Pande K, White T, Nakane T, Berntsson O, Gustavsson E, Båth P, Modi V, Roy-Chowdhury S, et al. The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography. Scientific Reports. 6: 35279. PMID 27756898 DOI: 10.1038/Srep35279  0.519
2016 Takala H, Niebling S, Berntsson O, Björling A, Lehtivuori H, Häkkänen H, Panman M, Gustavsson E, Hoernke M, Newby G, Zontone F, Wulff M, Menzel A, Ihalainen JA, Westenhoff S. Light-induced structural changes in a monomeric bacteriophytochrome. Structural Dynamics (Melville, N.Y.). 3: 054701. PMID 27679804 DOI: 10.1063/1.4961911  0.567
2016 Björling A, Berntsson O, Lehtivuori H, Takala H, Hughes AJ, Panman M, Hoernke M, Niebling S, Henry L, Henning R, Kosheleva I, Chukharev V, Tkachenko NV, Menzel A, Newby G, et al. Structural photoactivation of a full-length bacterial phytochrome. Science Advances. 2: e1600920. PMID 27536728 DOI: 10.1126/Sciadv.1600920  0.557
2015 Ihalainen JA, Takala H, Lehtivuori H. Fast Photochemistry of Prototypical Phytochromes-A Species vs. Subunit Specific Comparison. Frontiers in Molecular Biosciences. 2: 75. PMID 26779488 DOI: 10.3389/Fmolb.2015.00075  0.502
2015 Björling A, Berntsson O, Takala H, Gallagher KD, Patel H, Gustavsson E, St Peter R, Duong P, Nugent A, Zhang F, Berntsen P, Appio R, Rajkovic I, Lehtivuori H, Panman MR, et al. Ubiquitous Structural Signaling in Bacterial Phytochromes. The Journal of Physical Chemistry Letters. 3379-3383. PMID 26275765 DOI: 10.1021/Acs.Jpclett.5B01629  0.513
2015 Takala H, Björling A, Linna M, Westenhoff S, Ihalainen JA. Light-induced Changes in the Dimerization Interface of Bacteriophytochromes. The Journal of Biological Chemistry. 290: 16383-92. PMID 25971964 DOI: 10.1074/Jbc.M115.650127  0.501
2015 Takala HP. Light-induced structural changes in a bacterial phytochrome Acta Crystallographica Section a Foundations and Advances. 71: s36-s36. DOI: 10.1107/S205327331509943X  0.306
2014 Takala H, Lehtivuori H, Hammarén H, Hytönen VP, Ihalainen JA. Connection between absorption properties and conformational changes in Deinococcus radiodurans phytochrome. Biochemistry. 53: 7076-85. PMID 25337904 DOI: 10.1021/Bi501180S  0.469
2014 Takala H, Björling A, Berntsson O, Lehtivuori H, Niebling S, Hoernke M, Kosheleva I, Henning R, Menzel A, Ihalainen JA, Westenhoff S. Signal amplification and transduction in phytochrome photosensors. Nature. 509: 245-8. PMID 24776794 DOI: 10.1038/Nature13310  0.533
2013 Lehtivuori H, Rissanen I, Takala H, Bamford J, Tkachenko NV, Ihalainen JA. Fluorescence properties of the chromophore-binding domain of bacteriophytochrome from Deinococcus radiodurans. The Journal of Physical Chemistry. B. 117: 11049-57. PMID 23464656 DOI: 10.1021/Jp312061B  0.346
2012 Takala H, Ylänne J. Binding properties and stability of the Ras-association domain of Rap1-GTP interacting adapter molecule (RIAM). Plos One. 7: e31955. PMID 22523535 DOI: 10.1371/Journal.Pone.0031955  0.358
2011 Pentikäinen U, Jiang P, Takala H, Ruskamo S, Campbell ID, Ylänne J. Assembly of a filamin four-domain fragment and the influence of splicing variant-1 on the structure Journal of Biological Chemistry. 286: 26921-26930. PMID 21636571 DOI: 10.1074/Jbc.M110.195958  0.483
2008 Takala H, Nurminen E, Nurmi SM, Aatonen M, Strandin T, Takatalo M, Kiema T, Gahmberg CG, Ylänne J, Fagerholm SC. Beta2 integrin phosphorylation on Thr758 acts as a molecular switch to regulate 14-3-3 and filamin binding. Blood. 112: 1853-62. PMID 18550856 DOI: 10.1182/Blood-2007-12-127795  0.338
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