Allan Jacobson - Related publications

University Of Massachusetts Med Sch Worcester 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Cetnar DP, Salis HM. Systematic Quantification of Sequence and Structural Determinants Controlling mRNA stability in Bacterial Operons. Acs Synthetic Biology. PMID 33464822 DOI: 10.1021/acssynbio.0c00471   
2021 Song P, Yang F, Jin H, Wang X. The regulation of protein translation and its implications for cancer. Signal Transduction and Targeted Therapy. 6: 68. PMID 33597534 DOI: 10.1038/s41392-020-00444-9   
2021 Liu Z, Liu Q, Yang X, Zhang Y, Norris M, Chen X, Cheema J, Zhang H, Ding Y. In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants. Genome Biology. 22: 11. PMID 33397430 DOI: 10.1186/s13059-020-02236-4   
2021 Liu XM, Zhou J. Multifaceted regulation of translation by the epitranscriptomic modification N-methyadenosine. Critical Reviews in Biochemistry and Molecular Biology. 1-21. PMID 33412937 DOI: 10.1080/10409238.2020.1869174   
2021 Brachova P, Alvarez NS, Christenson LK. Loss of Impairs Inosine RNA Modifications in Mouse Oocytes. International Journal of Molecular Sciences. 22. PMID 33530472 DOI: 10.3390/ijms22031191   
2021 Yang J, Han YH, Im J, Seo SW. Synthetic protein quality control to enhance full-length translation in bacteria. Nature Chemical Biology. PMID 33542534 DOI: 10.1038/s41589-021-00736-3   
2021 Wang D, Zhang Z, Jiang Y, Mao Z, Wang D, Lin H, Xu D. DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism. Nucleic Acids Research. PMID 33503258 DOI: 10.1093/nar/gkab016   
2021 Medina-Muñoz SG, Kushawah G, Castellano LA, Diez M, DeVore ML, Salazar MJB, Bazzini AA. Crosstalk between codon optimality and cis-regulatory elements dictates mRNA stability. Genome Biology. 22: 14. PMID 33402205 DOI: 10.1186/s13059-020-02251-5   
2021 Medina-Muñoz SG, Kushawah G, Castellano LA, Diez M, DeVore ML, Salazar MJB, Bazzini AA. Crosstalk between codon optimality and cis-regulatory elements dictates mRNA stability. Genome Biology. 22: 14. PMID 33402205 DOI: 10.1186/s13059-020-02251-5   
2021 Alqassem I, Sonthalia Y, Klitzke-Feser E, Shim H, Canzar S. McSplicer: a probabilistic model for estimating splice site usage from RNA-seq data. Bioinformatics (Oxford, England). PMID 33515239 DOI: 10.1093/bioinformatics/btab050   
2021 Winata CL, Łapiński M, Ismail H, Mathavan S, Sampath P. Exploring Translational Control of Maternal mRNAs in Zebrafish. Methods in Molecular Biology (Clifton, N.J.). 2218: 367-380. PMID 33606246 DOI: 10.1007/978-1-0716-0970-5_29   
2021 Aleshkina D, Iyyappan R, Lin CJ, Masek T, Pospisek M, Susor A. ncRNA BC1 influences translation in the oocyte. Rna Biology. PMID 33491548 DOI: 10.1080/15476286.2021.1880181   
2021 Aleshkina D, Iyyappan R, Lin CJ, Masek T, Pospisek M, Susor A. ncRNA BC1 influences translation in the oocyte. Rna Biology. PMID 33491548 DOI: 10.1080/15476286.2021.1880181   
2021 Aleshkina D, Iyyappan R, Lin CJ, Masek T, Pospisek M, Susor A. ncRNA BC1 influences translation in the oocyte. Rna Biology. PMID 33491548 DOI: 10.1080/15476286.2021.1880181   
2021 Jia JJ, Lahr RM, Solgaard MT, Moraes BJ, Pointet R, Yang AD, Celucci G, Graber TE, Hoang HD, Niklaus MR, Pena IA, Hollensen AK, Smith EM, Chaker-Margot M, Anton L, et al. mTORC1 promotes TOP mRNA translation through site-specific phosphorylation of LARP1. Nucleic Acids Research. PMID 33398329 DOI: 10.1093/nar/gkaa1239   
2021 Nosella ML, Forman-Kay JD. Phosphorylation-dependent regulation of messenger RNA transcription, processing and translation within biomolecular condensates. Current Opinion in Cell Biology. 69: 30-40. PMID 33450720 DOI: 10.1016/   
2021 Smith RCL, Kanellos G, Vlahov N, Alexandrou C, Willis AE, Knight JRP, Sansom OJ. Translation initiation in cancer at a glance. Journal of Cell Science. 134. PMID 33441326 DOI: 10.1242/jcs.248476   
2021 Wagner RE, Frye M. Noncanonical functions of the serine-arginine-rich splicing factor (SR) family of proteins in development and disease. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2000242. PMID 33554347 DOI: 10.1002/bies.202000242   
2021 Kim J, Goñi-Moreno A, de Lorenzo V. Subcellular Architecture of the Gene Expression Flow of the TOL Catabolic Plasmid of Pseudomonas putida mt-2. Mbio. 12. PMID 33622725 DOI: 10.1128/mBio.03685-20   
2021 Mishima Y, Inoue K. Tethered Function Assay to Study RNA-Regulatory Proteins in Zebrafish Embryos. Methods in Molecular Biology (Clifton, N.J.). 2218: 347-354. PMID 33606244 DOI: 10.1007/978-1-0716-0970-5_27   
2021 Li H, Chen Y, Zhang J, Lin Y, Yang Z, Tan J, Qiao W. Identification of the internal ribosome entry sites in the 5'‑untranslated region of the gene. International Journal of Molecular Medicine. 47. PMID 33604677 DOI: 10.3892/ijmm.2021.4889   
2021 Zhao T, Chen YM, Li Y, Wang J, Chen S, Gao N, Qian W. Disome-seq reveals widespread ribosome collisions that promote cotranslational protein folding. Genome Biology. 22: 16. PMID 33402206 DOI: 10.1186/s13059-020-02256-0   
2021 Xu X, Mann M, Qiao D, Brasier AR. Alternative mRNA Processing of Innate Response Pathways in Respiratory Syncytial Virus (RSV) Infection. Viruses. 13. PMID 33572560 DOI: 10.3390/v13020218   
2021 Sawyer EB, Phelan JE, Clark TG, Cortes T. A snapshot of translation in Mycobacterium tuberculosis during exponential growth and nutrient starvation revealed by ribosome profiling. Cell Reports. 34: 108695. PMID 33535039 DOI: 10.1016/j.celrep.2021.108695   
2021 Lapointe CP, Grosely R, Johnson AG, Wang J, Fernández IS, Puglisi JD. Dynamic competition between SARS-CoV-2 NSP1 and mRNA on the human ribosome inhibits translation initiation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33479166 DOI: 10.1073/pnas.2017715118   
2021 Lee HC, Fu CY, Lin CY, Hu JR, Huang TY, Lo KY, Tsai HY, Sheu JC, Tsai HJ. Poly(U)-specific endoribonuclease ENDOU promotes translation of human CHOP mRNA by releasing uORF element-mediated inhibition. The Embo Journal. e104123. PMID 33511665 DOI: 10.15252/embj.2019104123   
2021 Ran Y, Deng Y, Yao C. U1 snRNP telescripting: molecular mechanisms and beyond. Rna Biology. PMID 33416026 DOI: 10.1080/15476286.2021.1872963   
2021 Reimer KA, Mimoso CA, Adelman K, Neugebauer KM. Co-transcriptional splicing regulates 3' end cleavage during mammalian erythropoiesis. Molecular Cell. PMID 33440169 DOI: 10.1016/j.molcel.2020.12.018   
2021 van der Feltz C, Nikolai B, Schneider C, Paulson JC, Fu X, Hoskins AA. Saccharomyces cerevisiae Ecm2 Modulates the Catalytic Steps of pre-mRNA Splicing. Rna (New York, N.Y.). PMID 33547186 DOI: 10.1261/rna.077727.120   
2021 Borišek J, Casalino L, Saltalamacchia A, Mays SG, Malcovati L, Magistrato A. Atomic-Level Mechanism of Pre-mRNA Splicing in Health and Disease. Accounts of Chemical Research. 54: 144-154. PMID 33317262 DOI: 10.1021/acs.accounts.0c00578   
2021 Legere RM, Cohen ND, Poveda C, Bray JM, Barhoumi R, Szule JA, de la Concha-Bermejillo A, Bordin AI, Pollet J. Safe and effective aerosolization of in vitro transcribed mRNA to the respiratory tract epithelium of horses without a transfection agent. Scientific Reports. 11: 371. PMID 33432084 DOI: 10.1038/s41598-020-79855-1   
2021 Shen H, Luo G, Chen Q. Long noncoding RNAs as tumorigenic factors and therapeutic targets for renal cell carcinoma. Cancer Cell International. 21: 110. PMID 33593347 DOI: 10.1186/s12935-021-01805-2   
2021 Wang J, Wang C, Li L, Yang L, Wang S, Ning X, Gao S, Ren L, Chaulagain A, Tang J, Wang T. Alternative splicing: An important regulatory mechanism in colorectal carcinoma. Molecular Carcinogenesis. PMID 33629774 DOI: 10.1002/mc.23291   
2021 Chu WK, Hung LM, Hou CW, Chen JK. PKC Regulates YAP Expression through Alternative Splicing of YAP 3'UTR Pre-mRNA by hnRNP F. International Journal of Molecular Sciences. 22. PMID 33445676 DOI: 10.3390/ijms22020694   
2021 Zhang J, Ma Y, Xie D, Bao Y, Yang W, Wang H, Jiang H, Han H, Dong T. Differentially expressed lncRNAs in liver tissues of TX mice with hepatolenticular degeneration. Scientific Reports. 11: 1377. PMID 33446761 DOI: 10.1038/s41598-020-80635-0   
2021 Yang CX, Wu ZW, Liu XM, Liang H, Gao ZR, Wang Y, Fang T, Liu YH, Miao YL, Du ZQ. Single cell RNA-seq reveals mRNAs and lncRNAs important for oocytes in vitro matured in pigs. Reproduction in Domestic Animals = Zuchthygiene. PMID 33496347 DOI: 10.1111/rda.13901   
2021 Fuchs A, Riegler S, Ayatollahi Z, Cavallari N, Giono LE, Nimeth BA, Mutanwad KV, Schweighofer A, Lucyshyn D, Barta A, Petrillo E, Kalyna M. Targeting alternative splicing by RNAi: from the differential impact on splice variants to triggering artificial pre-mRNA splicing. Nucleic Acids Research. PMID 33406240 DOI: 10.1093/nar/gkaa1260   
2021 Bailey M, Ivanauskaite A, Grimmer J, Akintewe O, Payne AC, Osborne R, Labandera AM, Etherington RD, Rantala M, Baginsky S, Mulo P, Gibbs DJ. The Arabidopsis NOT4A E3 ligase promotes PGR3 expression and regulates chloroplast translation. Nature Communications. 12: 251. PMID 33431870 DOI: 10.1038/s41467-020-20506-4   
2021 Henderson JM, Ujita A, Hill E, Yousif-Rosales S, Smith C, Ko N, McReynolds T, Cabral CR, Escamilla-Powers JR, Houston ME. Cap 1 Messenger RNA Synthesis with Co-transcriptional CleanCap Analog by In Vitro Transcription. Current Protocols. 1: e39. PMID 33524237 DOI: 10.1002/cpz1.39   
2021 Zhang L, Wan Y, Zhang Z, Jiang Y, Gu Z, Ma X, Nie S, Yang J, Lang J, Cheng W, Zhu L. IGF2BP1 overexpression stabilizes PEG10 mRNA in an m6A-dependent manner and promotes endometrial cancer progression. Theranostics. 11: 1100-1114. PMID 33391523 DOI: 10.7150/thno.49345   
2021 Wong DK, Stark MR, Rader SD, Fast NM. Characterization of Pre-mRNA Splicing and Spliceosomal Machinery in Porphyridium purpureum and Evolutionary Implications for Red Algae. The Journal of Eukaryotic Microbiology. PMID 33569840 DOI: 10.1111/jeu.12844   
2021 van der Graaf K, Jindrich K, Mitchell R, White-Cooper H. Roles for RNA export factor, Nxt1, in ensuring muscle integrity and normal RNA expression in Drosophila. G3 (Bethesda, Md.). 11. PMID 33561245 DOI: 10.1093/g3journal/jkaa046   
2021 Lee M, Ryu M, Joo M, Seo YJ, Lee J, Kim HM, Shin E, Yeom JH, Kim YH, Bae J, Lee K. Endoribonuclease-mediated control of hns mRNA stability constitutes a key regulatory pathway for Salmonella Typhimurium pathogenicity island 1 expression. Plos Pathogens. 17: e1009263. PMID 33524062 DOI: 10.1371/journal.ppat.1009263   
2021 Yeasmin F, Imamachi N, Tanu T, Taniue K, Kawamura T, Yada T, Akimitsu N. Identification and analysis of short open reading frames (sORFs) in the initially annotated noncoding RNA LINC00493 from human cells. Journal of Biochemistry. PMID 33386847 DOI: 10.1093/jb/mvaa143   
2021 Jiang W, Chen L. Alternative splicing: Human disease and quantitative analysis from high-throughput sequencing. Computational and Structural Biotechnology Journal. 19: 183-195. PMID 33425250 DOI: 10.1016/j.csbj.2020.12.009   
2021 Warminski M, Kowalska J, Nowak E, Kubacka D, Tibble R, Kasprzyk R, Sikorski PJ, Gross JD, Nowotny M, Jemielity J. Structural Insights into the Interaction of Clinically Relevant Phosphorothioate mRNA Cap Analogs with Translation Initiation Factor 4E Reveal Stabilization via Electrostatic Thio-Effect. Acs Chemical Biology. PMID 33439620 DOI: 10.1021/acschembio.0c00864   
2021 Zhang Y, Liu L, Qiu Q, Zhou Q, Ding J, Lu Y, Liu P. Alternative polyadenylation: methods, mechanism, function, and role in cancer. Journal of Experimental & Clinical Cancer Research : Cr. 40: 51. PMID 33526057 DOI: 10.1186/s13046-021-01852-7   
2021 De Santis M, Hahn J, Dubnau D. ComEB protein is dispensable for transformation but must be translated for optimal synthesis of ComEC. Molecular Microbiology. PMID 33527432 DOI: 10.1111/mmi.14690   
2021 Mou T, Pawitan Y, Stahl M, Vesterlund M, Deng W, Jafari R, Bohlin A, Österroos A, Siavelis L, Bäckvall H, Erkers T, Kiviluoto S, Seashore-Ludlow B, Östling P, Orre LM, et al. The transcriptome-wide landscape of molecular subtype-specific mRNA expression profiles in acute myeloid leukemia. American Journal of Hematology. PMID 33625756 DOI: 10.1002/ajh.26141   
2021 Theodoridis PR, Bokros M, Marijan D, Balukoff NC, Wang D, Kirk CC, Budine TD, Goldsmith HD, Wang M, Audas TE, Lee S. Local translation in nuclear condensate amyloid bodies. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33568529 DOI: 10.1073/pnas.2014457118