Nadia Amrani - Related publications

Affiliations: 
University Of Massachusetts Med Sch Worcester 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Goldman DH, Livingston NM, Movsik J, Wu B, Green R. Live-cell imaging reveals kinetic determinants of quality control triggered by ribosome stalling. Molecular Cell. PMID 33581075 DOI: 10.1016/j.molcel.2021.01.029   
2021 Kolber NS, Fattal R, Bratulic S, Carver GD, Badran AH. Orthogonal translation enables heterologous ribosome engineering in E. coli. Nature Communications. 12: 599. PMID 33500394 DOI: 10.1038/s41467-020-20759-z   
2021 Cheong BE, Beine-Golovchuk O, Gorka M, Ho WWH, Martinez-Seidel F, Firmino AAP, Skirycz A, Roessner U, Kopka J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports. 11: 2410. PMID 33510206 DOI: 10.1038/s41598-021-81610-z   
2021 Najmi SM, Schneider DA. Quorum sensing regulates rRNA synthesis in Saccharomyces cerevisiae. Gene. 145442. PMID 33482283 DOI: 10.1016/j.gene.2021.145442   
2021 Metge BJ, Kammerud SC, Pruitt HC, Shevde LA, Samant RS. Hypoxia re-programs 2'-O-Me modifications on ribosomal RNA. Iscience. 24: 102010. PMID 33490918 DOI: 10.1016/j.isci.2020.102010   
2021 Zong T, Yang Y, Zhao H, Li L, Liu M, Fu X, Tang G, Zhou H, Aung LHH, Li P, Wang J, Wang Z, Yu T. tsRNAs: Novel small molecules from cell function and regulatory mechanism to therapeutic targets. Cell Proliferation. e12977. PMID 33507586 DOI: 10.1111/cpr.12977   
2021 Minati L, Firrito C, Del Piano A, Peretti A, Sidoli S, Peroni D, Belli R, Gandolfi F, Romanel A, Bernabo P, Zasso J, Quattrone A, Guella G, Lauria F, Viero G, et al. One-shot analysis of translated mammalian lncRNAs with AHARIBO. Elife. 10. PMID 33594971 DOI: 10.7554/eLife.59303   
2021 Ranjan N, Pochopien AA, Chih-Chien Wu C, Beckert B, Blanchet S, Green R, V Rodnina M, Wilson DN. Yeast translation elongation factor eEF3 promotes late stages of tRNA translocation. The Embo Journal. e106449. PMID 33555093 DOI: 10.15252/embj.2020106449   
2021 Levy M, Falkovich R, Vonshak O, Bracha D, Tayar AM, Shimizu Y, Daube SS, Bar-Ziv RH. Boundary-Free Ribosome Compartmentalization by Gene Expression on a Surface. Acs Synthetic Biology. PMID 33595282 DOI: 10.1021/acssynbio.0c00613   
2021 Gamper H, Li H, Masuda I, Miklos Robkis D, Christian T, Conn AB, Blaha G, Petersson EJ, Gonzalez RL, Hou YM. Insights into genome recoding from the mechanism of a classic +1-frameshifting tRNA. Nature Communications. 12: 328. PMID 33436566 DOI: 10.1038/s41467-020-20373-z   
2021 Liu Y, Yang Q, Zhao F. Synonymous but not Silent: The Codon Usage Code for Gene Expression and Protein Folding. Annual Review of Biochemistry. PMID 33441035 DOI: 10.1146/annurev-biochem-071320-112701   
2021 Yildiz T, Leimkühler S. TusA is a Versatile Protein That Links Translation Efficiency to Cell Division in . Journal of Bacteriology. PMID 33526615 DOI: 10.1128/JB.00659-20   
2021 Scopino K, Dalgarno C, Nachmanoff C, Krizanc D, Thayer KM, Weir MP. Arginine Methylation Regulates Ribosome CAR Function. International Journal of Molecular Sciences. 22. PMID 33572867 DOI: 10.3390/ijms22031335   
2021 Hollerer I, Powers EN, Brar GA. Global mapping of translation initiation sites by TIS profiling in budding yeast. Star Protocols. 2: 100250. PMID 33458709 DOI: 10.1016/j.xpro.2020.100250   
2021 Karasik A, Jones GD, DePass AV, Guydosh NR. Activation of the antiviral factor RNase L triggers translation of non-coding mRNA sequences. Nucleic Acids Research. PMID 33556964 DOI: 10.1093/nar/gkab036   
2021 Zheng X, Wang S, Hong S, Liu J, Jiang C. Knockdown of eIF3a attenuated cell growth in K1 human thyroid cancer cells. Genes & Genomics. PMID 33595813 DOI: 10.1007/s13258-021-01048-5   
2021 Hu H, Liu X, Xiao A, Li Y, Zhang C, Jiang T, Zhao D, Song S, Zeng J. Riboexp: an interpretable reinforcement learning framework for ribosome density modeling. Briefings in Bioinformatics. PMID 33479731 DOI: 10.1093/bib/bbaa412   
2021 Agmon I, Fayerverker I, Mor T. Coding triplets in the tRNA acceptor-TΨC arm and their role in present and past tRNA recognition. Febs Letters. PMID 33460451 DOI: 10.1002/1873-3468.14044   
2021 Clancy A, Heride C, Pinto-Fernández A, Elcocks H, Kallinos A, Kayser-Bricker KJ, Wang W, Smith V, Davis S, Fessler S, McKinnon C, Katz M, Hammonds T, Jones NP, O'Connell J, et al. The deubiquitylase USP9X controls ribosomal stalling. The Journal of Cell Biology. 220. PMID 33507233 DOI: 10.1083/jcb.202004211   
2021 Bhaskar V, Desogus J, Graff-Meyer A, Schenk AD, Cavadini S, Chao JA. Dynamic association of human Ebp1 with the ribosome. Rna (New York, N.Y.). PMID 33479117 DOI: 10.1261/rna.077602.120   
2021 Ng MY, Li H, Ghelfi MD, Goldman YE, Cooperman BS. Ataluren and aminoglycosides stimulate read-through of nonsense codons by orthogonal mechanisms. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33414181 DOI: 10.1073/pnas.2020599118   
2021 Sims J, Sestini G, Elgert C, von Haeseler A, Schlögelhofer P. Sequencing of the Arabidopsis NOR2 reveals its distinct organization and tissue-specific rRNA ribosomal variants. Nature Communications. 12: 387. PMID 33452254 DOI: 10.1038/s41467-020-20728-6   
2021 Xu C, Shen Y, Li C, Lu F, Zhang MD, Meeley RB, McCarty DR, Tan BC. Emb15 encodes a plastid ribosomal assembly factor essential for embryogenesis in maize. The Plant Journal : For Cell and Molecular Biology. PMID 33450100 DOI: 10.1111/tpj.15160   
2021 Kimura S. Distinct evolutionary pathways for the synthesis and function of tRNA modifications. Briefings in Functional Genomics. PMID 33454776 DOI: 10.1093/bfgp/elaa027   
2021 Porter JJ, Heil CS, Lueck JD. Therapeutic promise of engineered nonsense suppressor tRNAs. Wiley Interdisciplinary Reviews. Rna. e1641. PMID 33567469 DOI: 10.1002/wrna.1641   
2021 Grasso KT, Yeo MJR, Hillenbrand CM, Ficaretta ED, Italia JS, Huang RL, Chatterjee A. Structural Robustness Affects the Engineerability of Aminoacyl-tRNA Synthetases for Genetic Code Expansion. Biochemistry. PMID 33560840 DOI: 10.1021/acs.biochem.1c00056   
2021 Ender A, Etzel M, Hammer S, Findeiß S, Stadler P, Mörl M. Ligand-dependent tRNA processing by a rationally designed RNase P riboswitch. Nucleic Acids Research. PMID 33469651 DOI: 10.1093/nar/gkaa1282   
2021 Saad AK, Marafi D, Mitani T, Du H, Rafat K, Fatih JM, Jhangiani SN, Coban-Akdemir Z, , Gibbs RA, Pehlivan D, Hunter JV, Posey JE, Zaki MS, Lupski JR. Neurodevelopmental disorder in an Egyptian family with a biallelic ALKBH8 variant. American Journal of Medical Genetics. Part A. PMID 33544954 DOI: 10.1002/ajmg.a.62100   
2021 Knüppel R, Trahan C, Kern M, Wagner A, Grünberger F, Hausner W, Quax TEF, Albers SV, Oeffinger M, Ferreira-Cerca S. Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea. Nucleic Acids Research. PMID 33434266 DOI: 10.1093/nar/gkaa1268   
2021 Mizuno M, Ebine S, Shounai O, Nakajima S, Tomomatsu S, Ikeuchi K, Matsuo Y, Inada T. The nascent polypeptide in the 60S subunit determines the Rqc2-dependency of ribosomal quality control. Nucleic Acids Research. PMID 33511411 DOI: 10.1093/nar/gkab005   
2021 Rosu A, El Hachem N, Rapino F, Rouault-Pierre K, Jorssen J, Somja J, Ramery E, Thiry M, Nguyen L, Jacquemyn M, Daelemans D, Adams CM, Bonnet D, Chariot A, Close P, et al. Loss of tRNA-modifying enzyme Elp3 activates a p53-dependent antitumor checkpoint in hematopoiesis. The Journal of Experimental Medicine. 218. PMID 33507234 DOI: 10.1084/jem.20200662   
2021 Yoon YB, Cho SJ, Park SC. Identification and expression of adenosine deaminases acting on tRNA (ADAT) during early tail regeneration of the earthworm. Genes & Genomics. PMID 33575975 DOI: 10.1007/s13258-020-01031-6   
2021 Zhang L, He J, Bai L, Ruan S, Yang T, Luo Y. Ribosome-targeting antibacterial agents: Advances, challenges, and opportunities. Medicinal Research Reviews. PMID 33501747 DOI: 10.1002/med.21780   
2021 Zhang Y, De Laurentiis E, Bohnsack KE, Wahlig M, Ranjan N, Gruseck S, Hackert P, Wölfle T, Rodnina MV, Schwappach B, Rospert S. Ribosome-bound Get4/5 facilitates the capture of tail-anchored proteins by Sgt2 in yeast. Nature Communications. 12: 782. PMID 33542241 DOI: 10.1038/s41467-021-20981-3   
2021 Svetlov MS, Syroegin EA, Aleksandrova EV, Atkinson GC, Gregory ST, Mankin AS, Polikanov YS. Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance. Nature Chemical Biology. PMID 33462493 DOI: 10.1038/s41589-020-00715-0   
2021 Ma X, Liu C, Kong X, Liu J, Zhang S, Liang S, Luan W, Cao X. Extensive profiling of the expressions of tRNAs and tRNA-derived fragments (tRFs) reveals the complexities of tRNA and tRF populations in plants. Science China. Life Sciences. PMID 33569675 DOI: 10.1007/s11427-020-1891-8   
2021 Ho MT, Lu J, Brunßen D, Suter B. A translation independent function of PheRS/FARS activates growth and proliferation. Disease Models & Mechanisms. PMID 33547043 DOI: 10.1242/dmm.048132   
2021 Mulroney TE, Pöyry T, Willis AE. Hypoxia: Uncharged tRNA to the Rescue! Current Biology : Cb. 31: R25-R27. PMID 33434482 DOI: 10.1016/j.cub.2020.10.067   
2021 Mulroney TE, Pöyry T, Willis AE. Hypoxia: Uncharged tRNA to the Rescue! Current Biology : Cb. 31: R25-R27. PMID 33434482 DOI: 10.1016/j.cub.2020.10.067   
2021 Ding Y, Zhuo G, Guo Q, Li M. Leber's Hereditary Optic Neuropathy: the roles of mitochondrial transfer RNA variants. Peerj. 9: e10651. PMID 33552719 DOI: 10.7717/peerj.10651   
2021 Uzair M, Long H, Zafar SA, Patil SB, Chun Y, Li L, Fang J, Zhao J, Peng L, Yuan S, Li X. Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice. Plant Physiology. PMID 33591317 DOI: 10.1093/plphys/kiab075   
2021 Liu Y, Davis RG, Thomas PM, Kelleher NL, Jewett MC. -Constructed Ribosomes Enable Multi-site Incorporation of Noncanonical Amino Acids into Proteins. Biochemistry. PMID 33426883 DOI: 10.1021/acs.biochem.0c00829   
2021 Hori I, Ieda D, Ito S, Ebe S, Nakamura Y, Ohashi K, Aoyama K, Hattori A, Kokubo M, Saitoh S. Peripheral nerves are involved in hypomyelinating leukodystrophy-3 caused by a homozygous AIMP1 variant. Brain & Development. PMID 33402283 DOI: 10.1016/j.braindev.2020.12.008   
2021 Peng GX, Zhang Y, Wang QQ, Li QR, Xu H, Wang ED, Zhou XL. The human tRNA taurine modification enzyme GTPBP3 is an active GTPase linked to mitochondrial diseases. Nucleic Acids Research. PMID 33619562 DOI: 10.1093/nar/gkab104   
2021 Schwark DG, Schmitt MA, Fisk JD. Directed Evolution of the Pyrrolysyl tRNA/aminoacyl tRNA Synthetase Pair for Rapid Evaluation of Sense Codon Reassignment Potential. International Journal of Molecular Sciences. 22. PMID 33477414 DOI: 10.3390/ijms22020895   
2021 Lee J, Schwarz KJ, Yu H, Krüger A, Anslyn EV, Ellington AD, Moore JS, Jewett MC. Ribosome-mediated incorporation of fluorescent amino acids into peptides . Chemical Communications (Cambridge, England). PMID 33592078 DOI: 10.1039/d0cc07740b   
2021 Mondal S, Wang S, Zheng Y, Sen S, Chatterjee A, Thompson PR. Site-specific incorporation of citrulline into proteins in mammalian cells. Nature Communications. 12: 45. PMID 33398026 DOI: 10.1038/s41467-020-20279-w   
2021 Malinova I, Zupok A, Massouh A, Aurel Schöttler M, Meyer EH, Yaneva-Roder L, Szymanski W, Rößner M, Ruf S, Bock R, Greiner S. Correction of Frameshift Mutations in the atpB Gene by Translational Recoding in Chloroplasts of Oenothera and Tobacco. The Plant Cell. PMID 33561268 DOI: 10.1093/plcell/koab050   
2021 Meng F, Zhou M, Xiao Y, Mao X, Zheng J, Lin J, Lin T, Ye Z, Cang X, Fu Y, Wang M, Guan MX. A deafness-associated tRNA mutation caused pleiotropic effects on the m1G37 modification, processing, stability and aminoacylation of tRNAIle and mitochondrial translation. Nucleic Acids Research. PMID 33398350 DOI: 10.1093/nar/gkaa1225   
2021 Chung CZ, Miller C, Söll D, Krahn N. Introducing Selenocysteine into Recombinant Proteins in Escherichia coli. Current Protocols. 1: e54. PMID 33566458 DOI: 10.1002/cpz1.54