Nadia Amrani - Related publications
Affiliations: | University Of Massachusetts Med Sch Worcester |
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50 most relevant papers in past 60 days:
50 most relevant papers in past 60 days:
| Year | Citation | Score | |
|---|---|---|---|
| 2021 | Goldman DH, Livingston NM, Movsik J, Wu B, Green R. Live-cell imaging reveals kinetic determinants of quality control triggered by ribosome stalling. Molecular Cell. PMID 33581075 DOI: 10.1016/j.molcel.2021.01.029 | ||
| 2021 | Kolber NS, Fattal R, Bratulic S, Carver GD, Badran AH. Orthogonal translation enables heterologous ribosome engineering in E. coli. Nature Communications. 12: 599. PMID 33500394 DOI: 10.1038/s41467-020-20759-z | ||
| 2021 | Cheong BE, Beine-Golovchuk O, Gorka M, Ho WWH, Martinez-Seidel F, Firmino AAP, Skirycz A, Roessner U, Kopka J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports. 11: 2410. PMID 33510206 DOI: 10.1038/s41598-021-81610-z | ||
| 2021 | Najmi SM, Schneider DA. Quorum sensing regulates rRNA synthesis in Saccharomyces cerevisiae. Gene. 145442. PMID 33482283 DOI: 10.1016/j.gene.2021.145442 | ||
| 2021 | Metge BJ, Kammerud SC, Pruitt HC, Shevde LA, Samant RS. Hypoxia re-programs 2'-O-Me modifications on ribosomal RNA. Iscience. 24: 102010. PMID 33490918 DOI: 10.1016/j.isci.2020.102010 | ||
| 2021 | Zong T, Yang Y, Zhao H, Li L, Liu M, Fu X, Tang G, Zhou H, Aung LHH, Li P, Wang J, Wang Z, Yu T. tsRNAs: Novel small molecules from cell function and regulatory mechanism to therapeutic targets. Cell Proliferation. e12977. PMID 33507586 DOI: 10.1111/cpr.12977 | ||
| 2021 | Minati L, Firrito C, Del Piano A, Peretti A, Sidoli S, Peroni D, Belli R, Gandolfi F, Romanel A, Bernabo P, Zasso J, Quattrone A, Guella G, Lauria F, Viero G, et al. One-shot analysis of translated mammalian lncRNAs with AHARIBO. Elife. 10. PMID 33594971 DOI: 10.7554/eLife.59303 | ||
| 2021 | Ranjan N, Pochopien AA, Chih-Chien Wu C, Beckert B, Blanchet S, Green R, V Rodnina M, Wilson DN. Yeast translation elongation factor eEF3 promotes late stages of tRNA translocation. The Embo Journal. e106449. PMID 33555093 DOI: 10.15252/embj.2020106449 | ||
| 2021 | Levy M, Falkovich R, Vonshak O, Bracha D, Tayar AM, Shimizu Y, Daube SS, Bar-Ziv RH. Boundary-Free Ribosome Compartmentalization by Gene Expression on a Surface. Acs Synthetic Biology. PMID 33595282 DOI: 10.1021/acssynbio.0c00613 | ||
| 2021 | Gamper H, Li H, Masuda I, Miklos Robkis D, Christian T, Conn AB, Blaha G, Petersson EJ, Gonzalez RL, Hou YM. Insights into genome recoding from the mechanism of a classic +1-frameshifting tRNA. Nature Communications. 12: 328. PMID 33436566 DOI: 10.1038/s41467-020-20373-z | ||
| 2021 | Liu Y, Yang Q, Zhao F. Synonymous but not Silent: The Codon Usage Code for Gene Expression and Protein Folding. Annual Review of Biochemistry. PMID 33441035 DOI: 10.1146/annurev-biochem-071320-112701 | ||
| 2021 | Yildiz T, Leimkühler S. TusA is a Versatile Protein That Links Translation Efficiency to Cell Division in . Journal of Bacteriology. PMID 33526615 DOI: 10.1128/JB.00659-20 | ||
| 2021 | Scopino K, Dalgarno C, Nachmanoff C, Krizanc D, Thayer KM, Weir MP. Arginine Methylation Regulates Ribosome CAR Function. International Journal of Molecular Sciences. 22. PMID 33572867 DOI: 10.3390/ijms22031335 | ||
| 2021 | Hollerer I, Powers EN, Brar GA. Global mapping of translation initiation sites by TIS profiling in budding yeast. Star Protocols. 2: 100250. PMID 33458709 DOI: 10.1016/j.xpro.2020.100250 | ||
| 2021 | Karasik A, Jones GD, DePass AV, Guydosh NR. Activation of the antiviral factor RNase L triggers translation of non-coding mRNA sequences. Nucleic Acids Research. PMID 33556964 DOI: 10.1093/nar/gkab036 | ||
| 2021 | Zheng X, Wang S, Hong S, Liu J, Jiang C. Knockdown of eIF3a attenuated cell growth in K1 human thyroid cancer cells. Genes & Genomics. PMID 33595813 DOI: 10.1007/s13258-021-01048-5 | ||
| 2021 | Hu H, Liu X, Xiao A, Li Y, Zhang C, Jiang T, Zhao D, Song S, Zeng J. Riboexp: an interpretable reinforcement learning framework for ribosome density modeling. Briefings in Bioinformatics. PMID 33479731 DOI: 10.1093/bib/bbaa412 | ||
| 2021 | Agmon I, Fayerverker I, Mor T. Coding triplets in the tRNA acceptor-TΨC arm and their role in present and past tRNA recognition. Febs Letters. PMID 33460451 DOI: 10.1002/1873-3468.14044 | ||
| 2021 | Clancy A, Heride C, Pinto-Fernández A, Elcocks H, Kallinos A, Kayser-Bricker KJ, Wang W, Smith V, Davis S, Fessler S, McKinnon C, Katz M, Hammonds T, Jones NP, O'Connell J, et al. The deubiquitylase USP9X controls ribosomal stalling. The Journal of Cell Biology. 220. PMID 33507233 DOI: 10.1083/jcb.202004211 | ||
| 2021 | Bhaskar V, Desogus J, Graff-Meyer A, Schenk AD, Cavadini S, Chao JA. Dynamic association of human Ebp1 with the ribosome. Rna (New York, N.Y.). PMID 33479117 DOI: 10.1261/rna.077602.120 | ||
| 2021 | Ng MY, Li H, Ghelfi MD, Goldman YE, Cooperman BS. Ataluren and aminoglycosides stimulate read-through of nonsense codons by orthogonal mechanisms. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33414181 DOI: 10.1073/pnas.2020599118 | ||
| 2021 | Sims J, Sestini G, Elgert C, von Haeseler A, Schlögelhofer P. Sequencing of the Arabidopsis NOR2 reveals its distinct organization and tissue-specific rRNA ribosomal variants. Nature Communications. 12: 387. PMID 33452254 DOI: 10.1038/s41467-020-20728-6 | ||
| 2021 | Xu C, Shen Y, Li C, Lu F, Zhang MD, Meeley RB, McCarty DR, Tan BC. Emb15 encodes a plastid ribosomal assembly factor essential for embryogenesis in maize. The Plant Journal : For Cell and Molecular Biology. PMID 33450100 DOI: 10.1111/tpj.15160 | ||
| 2021 | Kimura S. Distinct evolutionary pathways for the synthesis and function of tRNA modifications. Briefings in Functional Genomics. PMID 33454776 DOI: 10.1093/bfgp/elaa027 | ||
| 2021 | Porter JJ, Heil CS, Lueck JD. Therapeutic promise of engineered nonsense suppressor tRNAs. Wiley Interdisciplinary Reviews. Rna. e1641. PMID 33567469 DOI: 10.1002/wrna.1641 | ||
| 2021 | Grasso KT, Yeo MJR, Hillenbrand CM, Ficaretta ED, Italia JS, Huang RL, Chatterjee A. Structural Robustness Affects the Engineerability of Aminoacyl-tRNA Synthetases for Genetic Code Expansion. Biochemistry. PMID 33560840 DOI: 10.1021/acs.biochem.1c00056 | ||
| 2021 | Ender A, Etzel M, Hammer S, Findeiß S, Stadler P, Mörl M. Ligand-dependent tRNA processing by a rationally designed RNase P riboswitch. Nucleic Acids Research. PMID 33469651 DOI: 10.1093/nar/gkaa1282 | ||
| 2021 | Saad AK, Marafi D, Mitani T, Du H, Rafat K, Fatih JM, Jhangiani SN, Coban-Akdemir Z, , Gibbs RA, Pehlivan D, Hunter JV, Posey JE, Zaki MS, Lupski JR. Neurodevelopmental disorder in an Egyptian family with a biallelic ALKBH8 variant. American Journal of Medical Genetics. Part A. PMID 33544954 DOI: 10.1002/ajmg.a.62100 | ||
| 2021 | Knüppel R, Trahan C, Kern M, Wagner A, Grünberger F, Hausner W, Quax TEF, Albers SV, Oeffinger M, Ferreira-Cerca S. Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea. Nucleic Acids Research. PMID 33434266 DOI: 10.1093/nar/gkaa1268 | ||
| 2021 | Mizuno M, Ebine S, Shounai O, Nakajima S, Tomomatsu S, Ikeuchi K, Matsuo Y, Inada T. The nascent polypeptide in the 60S subunit determines the Rqc2-dependency of ribosomal quality control. Nucleic Acids Research. PMID 33511411 DOI: 10.1093/nar/gkab005 | ||
| 2021 | Rosu A, El Hachem N, Rapino F, Rouault-Pierre K, Jorssen J, Somja J, Ramery E, Thiry M, Nguyen L, Jacquemyn M, Daelemans D, Adams CM, Bonnet D, Chariot A, Close P, et al. Loss of tRNA-modifying enzyme Elp3 activates a p53-dependent antitumor checkpoint in hematopoiesis. The Journal of Experimental Medicine. 218. PMID 33507234 DOI: 10.1084/jem.20200662 | ||
| 2021 | Yoon YB, Cho SJ, Park SC. Identification and expression of adenosine deaminases acting on tRNA (ADAT) during early tail regeneration of the earthworm. Genes & Genomics. PMID 33575975 DOI: 10.1007/s13258-020-01031-6 | ||
| 2021 | Zhang L, He J, Bai L, Ruan S, Yang T, Luo Y. Ribosome-targeting antibacterial agents: Advances, challenges, and opportunities. Medicinal Research Reviews. PMID 33501747 DOI: 10.1002/med.21780 | ||
| 2021 | Zhang Y, De Laurentiis E, Bohnsack KE, Wahlig M, Ranjan N, Gruseck S, Hackert P, Wölfle T, Rodnina MV, Schwappach B, Rospert S. Ribosome-bound Get4/5 facilitates the capture of tail-anchored proteins by Sgt2 in yeast. Nature Communications. 12: 782. PMID 33542241 DOI: 10.1038/s41467-021-20981-3 | ||
| 2021 | Svetlov MS, Syroegin EA, Aleksandrova EV, Atkinson GC, Gregory ST, Mankin AS, Polikanov YS. Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance. Nature Chemical Biology. PMID 33462493 DOI: 10.1038/s41589-020-00715-0 | ||
| 2021 | Ma X, Liu C, Kong X, Liu J, Zhang S, Liang S, Luan W, Cao X. Extensive profiling of the expressions of tRNAs and tRNA-derived fragments (tRFs) reveals the complexities of tRNA and tRF populations in plants. Science China. Life Sciences. PMID 33569675 DOI: 10.1007/s11427-020-1891-8 | ||
| 2021 | Ho MT, Lu J, Brunßen D, Suter B. A translation independent function of PheRS/FARS activates growth and proliferation. Disease Models & Mechanisms. PMID 33547043 DOI: 10.1242/dmm.048132 | ||
| 2021 | Mulroney TE, Pöyry T, Willis AE. Hypoxia: Uncharged tRNA to the Rescue! Current Biology : Cb. 31: R25-R27. PMID 33434482 DOI: 10.1016/j.cub.2020.10.067 | ||
| 2021 | Mulroney TE, Pöyry T, Willis AE. Hypoxia: Uncharged tRNA to the Rescue! Current Biology : Cb. 31: R25-R27. PMID 33434482 DOI: 10.1016/j.cub.2020.10.067 | ||
| 2021 | Ding Y, Zhuo G, Guo Q, Li M. Leber's Hereditary Optic Neuropathy: the roles of mitochondrial transfer RNA variants. Peerj. 9: e10651. PMID 33552719 DOI: 10.7717/peerj.10651 | ||
| 2021 | Uzair M, Long H, Zafar SA, Patil SB, Chun Y, Li L, Fang J, Zhao J, Peng L, Yuan S, Li X. Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice. Plant Physiology. PMID 33591317 DOI: 10.1093/plphys/kiab075 | ||
| 2021 | Liu Y, Davis RG, Thomas PM, Kelleher NL, Jewett MC. -Constructed Ribosomes Enable Multi-site Incorporation of Noncanonical Amino Acids into Proteins. Biochemistry. PMID 33426883 DOI: 10.1021/acs.biochem.0c00829 | ||
| 2021 | Hori I, Ieda D, Ito S, Ebe S, Nakamura Y, Ohashi K, Aoyama K, Hattori A, Kokubo M, Saitoh S. Peripheral nerves are involved in hypomyelinating leukodystrophy-3 caused by a homozygous AIMP1 variant. Brain & Development. PMID 33402283 DOI: 10.1016/j.braindev.2020.12.008 | ||
| 2021 | Peng GX, Zhang Y, Wang QQ, Li QR, Xu H, Wang ED, Zhou XL. The human tRNA taurine modification enzyme GTPBP3 is an active GTPase linked to mitochondrial diseases. Nucleic Acids Research. PMID 33619562 DOI: 10.1093/nar/gkab104 | ||
| 2021 | Schwark DG, Schmitt MA, Fisk JD. Directed Evolution of the Pyrrolysyl tRNA/aminoacyl tRNA Synthetase Pair for Rapid Evaluation of Sense Codon Reassignment Potential. International Journal of Molecular Sciences. 22. PMID 33477414 DOI: 10.3390/ijms22020895 | ||
| 2021 | Lee J, Schwarz KJ, Yu H, Krüger A, Anslyn EV, Ellington AD, Moore JS, Jewett MC. Ribosome-mediated incorporation of fluorescent amino acids into peptides . Chemical Communications (Cambridge, England). PMID 33592078 DOI: 10.1039/d0cc07740b | ||
| 2021 | Mondal S, Wang S, Zheng Y, Sen S, Chatterjee A, Thompson PR. Site-specific incorporation of citrulline into proteins in mammalian cells. Nature Communications. 12: 45. PMID 33398026 DOI: 10.1038/s41467-020-20279-w | ||
| 2021 | Malinova I, Zupok A, Massouh A, Aurel Schöttler M, Meyer EH, Yaneva-Roder L, Szymanski W, Rößner M, Ruf S, Bock R, Greiner S. Correction of Frameshift Mutations in the atpB Gene by Translational Recoding in Chloroplasts of Oenothera and Tobacco. The Plant Cell. PMID 33561268 DOI: 10.1093/plcell/koab050 | ||
| 2021 | Meng F, Zhou M, Xiao Y, Mao X, Zheng J, Lin J, Lin T, Ye Z, Cang X, Fu Y, Wang M, Guan MX. A deafness-associated tRNA mutation caused pleiotropic effects on the m1G37 modification, processing, stability and aminoacylation of tRNAIle and mitochondrial translation. Nucleic Acids Research. PMID 33398350 DOI: 10.1093/nar/gkaa1225 | ||
| 2021 | Chung CZ, Miller C, Söll D, Krahn N. Introducing Selenocysteine into Recombinant Proteins in Escherichia coli. Current Protocols. 1: e54. PMID 33566458 DOI: 10.1002/cpz1.54 |