Christine E Cucinotta - Related publications

Fred Hutchinson Cancer Research Center, Seattle, WA, United States 
Molecular Biology
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Staneva DP, Carloni R, Auchynnikava T, Tong P, Arulanandam JA, Rappsilber J, Matthews KR, Allshire RC. A systematic analysis of chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination. Genome Research. PMID 34407985 DOI: 10.1101/gr.275368.121   
2021 Lee BB, Woo H, Lee MK, Youn S, Lee S, Roe JS, Lee SY, Kim T. Core promoter activity contributes to chromatin-based regulation of internal cryptic promoters. Nucleic Acids Research. PMID 34320189 DOI: 10.1093/nar/gkab639   
2021 Lee BB, Woo H, Lee MK, Youn S, Lee S, Roe JS, Lee SY, Kim T. Core promoter activity contributes to chromatin-based regulation of internal cryptic promoters. Nucleic Acids Research. PMID 34320189 DOI: 10.1093/nar/gkab639   
2021 Du W, Pan D, Xiang P, Xiong C, Zhang M, Zhang Q, Tian Y, Zhang Z, Chen B, Luo K, Gong Q, Tian X. Terpyridine Zn(II) Complexes with Azide Units for Visualization of Histone Deacetylation in Living Cells under STED Nanoscopy. Acs Sensors. PMID 34498846 DOI: 10.1021/acssensors.1c01287   
2021 Jeronimo C, Angel A, Nguyen VQ, Kim JM, Poitras C, Lambert E, Collin P, Mellor J, Wu C, Robert F. FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner. Molecular Cell. PMID 34380014 DOI: 10.1016/j.molcel.2021.07.010   
2021 Chapski DJ, Cabaj M, Morselli M, Mason RJ, Soehalim E, Ren S, Pellegrini M, Wang Y, Vondriska TM, Rosa-Garrido M. Early adaptive chromatin remodeling events precede pathologic phenotypes and are reinforced in the failing heart. Journal of Molecular and Cellular Cardiology. 160: 73-86. PMID 34273410 DOI: 10.1016/j.yjmcc.2021.07.002   
2021 Kan RL, Chen J, Sallam T. Crosstalk between epitranscriptomic and epigenetic mechanisms in gene regulation. Trends in Genetics : Tig. PMID 34294427 DOI: 10.1016/j.tig.2021.06.014   
2021 Yaakov G, Jonas F, Barkai N. Measurement of histone replacement dynamics with genetically encoded exchange timers in yeast. Nature Biotechnology. PMID 34239087 DOI: 10.1038/s41587-021-00959-8   
2021 Zufferey M, Liu Y, Tavernari D, Mina M, Ciriello G. Systematic assessment of gene co-regulation within chromatin domains determines differentially active domains across human cancers. Genome Biology. 22: 218. PMID 34344431 DOI: 10.1186/s13059-021-02436-6   
2021 McGinty RK, Tan S. Principles of nucleosome recognition by chromatin factors and enzymes. Current Opinion in Structural Biology. 71: 16-26. PMID 34198054 DOI: 10.1016/   
2021 McGinty RK, Tan S. Principles of nucleosome recognition by chromatin factors and enzymes. Current Opinion in Structural Biology. 71: 16-26. PMID 34198054 DOI: 10.1016/   
2021 Saha A, Dalal Y. A glitch in the snitch: the role of linker histone H1 in shaping the epigenome in normal and diseased cells. Open Biology. 11: 210124. PMID 34343462 DOI: 10.1098/rsob.210124   
2021 Chanou A, Hamperl S. Single-Molecule Techniques to Study Chromatin. Frontiers in Cell and Developmental Biology. 9: 699771. PMID 34291054 DOI: 10.3389/fcell.2021.699771   
2021 Cheung KL, Kim C, Zhou MM. The Functions of BET Proteins in Gene Transcription of Biology and Diseases. Frontiers in Molecular Biosciences. 8: 728777. PMID 34540900 DOI: 10.3389/fmolb.2021.728777   
2021 Jing Y, Tian G, Qin X, Liu Z, Li XD. Lysine succinylation on non-histone chromosomal protein HMG-17 (HMGN2) regulates nucleosomal DNA accessibility by disrupting the HMGN2-nucleosome association. Rsc Chemical Biology. 2: 1257-1262. PMID 34458839 DOI: 10.1039/d1cb00070e   
2021 Dehghani H. Regulation of Chromatin Organization in Cell Stemness: The Emerging Role of Long Non-coding RNAs. Stem Cell Reviews and Reports. PMID 34181184 DOI: 10.1007/s12015-021-10209-8   
2021 Kim JM, Visanpattanasin P, Jou V, Liu S, Tang X, Zheng Q, Li KY, Snedeker J, Lavis LD, Lionnet T, Wu C. Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin. Elife. 10. PMID 34313223 DOI: 10.7554/eLife.69387   
2021 Nguyen VQ, Ranjan A, Liu S, Tang X, Ling YH, Wisniewski J, Mizuguchi G, Li KY, Jou V, Zheng Q, Lavis LD, Lionnet T, Wu C. Spatiotemporal coordination of transcription preinitiation complex assembly in live cells. Molecular Cell. PMID 34375585 DOI: 10.1016/j.molcel.2021.07.022   
2021 Roberts GA, Ozkan B, Gachulincová I, O'Dwyer MR, Hall-Ponsele E, Saxena M, Robinson PJ, Soufi A. Dissecting OCT4 defines the role of nucleosome binding in pluripotency. Nature Cell Biology. 23: 834-845. PMID 34354236 DOI: 10.1038/s41556-021-00727-5   
2021 Höllmüller E, Greiner K, Kienle SM, Scheffner M, Marx A, Stengel F. Interactome of Site-Specifically Acetylated Linker Histone H1. Journal of Proteome Research. PMID 34351766 DOI: 10.1021/acs.jproteome.1c00396   
2021 Sudhamalla B, Barman S, Roy A, Bardhan I, Kandasamy T, Shivani S. Insights into the Molecular Mechanisms of Histone Code Recognition by the BRPF3 Bromodomain. Chemistry, An Asian Journal. PMID 34448544 DOI: 10.1002/asia.202100793   
2021 Sato Y, Kimura H. Multiplexed Imaging of Posttranslational Modifications of Endogenous Proteins in Live Cells. Methods in Molecular Biology (Clifton, N.J.). 2350: 31-41. PMID 34331277 DOI: 10.1007/978-1-0716-1593-5_3   
2021 Shoaib M, Chen Q, Shi X, Nair N, Prasanna C, Yang R, Walter D, Frederiksen KS, Einarsson H, Svensson JP, Liu CF, Ekwall K, Lerdrup M, Nordenskiöld L, Sørensen CS. Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes. Nature Communications. 12: 4800. PMID 34417450 DOI: 10.1038/s41467-021-25051-2   
2021 Guttzeit S, Backs J. Post-translational modifications talk and crosstalk to class IIa histone deacetylases. Journal of Molecular and Cellular Cardiology. PMID 34416247 DOI: 10.1016/j.yjmcc.2021.08.007   
2021 Hai R, He L, Shu G, Yin G. Characterization of Histone Deacetylase Mechanisms in Cancer Development. Frontiers in Oncology. 11: 700947. PMID 34395273 DOI: 10.3389/fonc.2021.700947   
2021 Li RG, Deng H, Liu XH, Chen ZY, Wan SS, Wang L. Histone Methyltransferase G9a Promotes the Development of Renal Cancer through Epigenetic Silencing of Tumor Suppressor Gene SPINK5. Oxidative Medicine and Cellular Longevity. 2021: 6650781. PMID 34336110 DOI: 10.1155/2021/6650781   
2021 Sato Y, Nakao M, Kimura H. Live-Cell Imaging Probes to Track Chromatin Modification Dynamics. Microscopy (Oxford, England). PMID 34329472 DOI: 10.1093/jmicro/dfab030   
2021 Gao M, Wang J, Rousseaux S, Tan M, Pan L, Peng L, Wang S, Xu W, Ren J, Liu Y, Spinck M, Barral S, Wang T, Chuffart F, Bourova-Flin E, et al. Metabolically controlled histone H4K5 acylation/acetylation ratio drives BRD4 genomic distribution. Cell Reports. 36: 109460. PMID 34320364 DOI: 10.1016/j.celrep.2021.109460   
2021 Tamburri S, Conway E, Pasini D. Polycomb-dependent histone H2A ubiquitination links developmental disorders with cancer. Trends in Genetics : Tig. PMID 34426021 DOI: 10.1016/j.tig.2021.07.011   
2021 Dai SK, Liu PP, Du HZ, Liu X, Xu YJ, Liu C, Wang YY, Teng ZQ, Liu CM. Histone crotonylation regulates neural stem cell fate decisions by activating bivalent promoters. Embo Reports. e52023. PMID 34369651 DOI: 10.15252/embr.202052023   
2021 Yu M, Juric I, Abnousi A, Hu M, Ren B. Proximity Ligation-Assisted ChIP-Seq (PLAC-Seq). Methods in Molecular Biology (Clifton, N.J.). 2351: 181-199. PMID 34382190 DOI: 10.1007/978-1-0716-1597-3_10   
2021 Wu PS, Grosser J, Cameron DP, Baranello L, Ström L. Deficiency of Polη in Saccharomyces cerevisiae reveals the impact of transcription on damage-induced cohesion. Plos Genetics. 17: e1009763. PMID 34499654 DOI: 10.1371/journal.pgen.1009763   
2021 Chen Z, Zhang Y, Guan Q, Zhang H, Luo J, Li J, Wei W, Xu X, Liao L, Wong J, Li J. Linking nuclear matrix-localized PIAS1 to chromatin SUMOylation via direct binding of histones H3 and H2A.Z. The Journal of Biological Chemistry. 101200. PMID 34537242 DOI: 10.1016/j.jbc.2021.101200   
2021 Gupta R, Ambasta RK, Kumar P. Histone deacetylase in neuropathology. Advances in Clinical Chemistry. 104: 151-231. PMID 34462055 DOI: 10.1016/bs.acc.2020.09.004   
2021 Peng Y, Li S, Onufriev A, Landsman D, Panchenko AR. Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails. Nature Communications. 12: 5280. PMID 34489435 DOI: 10.1038/s41467-021-25568-6   
2021 Dai Y, Wei T, Shen Z, Bei Y, Lin H, Dai H. Classical HDACs in the regulation of neuroinflammation. Neurochemistry International. 105182. PMID 34509559 DOI: 10.1016/j.neuint.2021.105182   
2021 Fulton MD, Cao M, Ho MC, Zhao X, Zheng YG. The Macromolecular Complexes of Histones Affect Protein Arginine Methyltransferase Activities. The Journal of Biological Chemistry. 101123. PMID 34492270 DOI: 10.1016/j.jbc.2021.101123   
2021 Petryk N, Reverón-Gómez N, González-Aguilera C, Dalby M, Andersson R, Groth A. Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq. Nature Protocols. PMID 34363071 DOI: 10.1038/s41596-021-00585-3   
2021 Mashtalir N, Dao HT, Sankar A, Liu H, Corin AJ, Bagert JD, Ge EJ, D'Avino AR, Filipovski M, Michel BC, Dann GP, Muir TW, Kadoch C. Chromatin landscape signals differentially dictate the activities of mSWI/SNF family complexes. Science (New York, N.Y.). 373: 306-315. PMID 34437148 DOI: 10.1126/science.abf8705   
2021 Rayapuram N, Jarad M, Alhoraibi HM, Bigeard J, Abulfaraj AA, Völz R, Mariappan KG, Almeida-Trapp M, Schlöffel M, Lastrucci E, Bonhomme L, Gust AA, Mithöfer A, Arold ST, Pflieger D, et al. Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33419940 DOI: 10.1073/pnas.2004670118   
2021 Fang K, Li T, Huang Y, Jin VX. NucHMM: a method for quantitative modeling of nucleosome organization identifying functional nucleosome states distinctly associated with splicing potentiality. Genome Biology. 22: 250. PMID 34446075 DOI: 10.1186/s13059-021-02465-1   
2021 Wu D, Wang L, Huang H. Protocol to apply spike-in ChIP-seq to capture massive histone acetylation in human cells. Star Protocols. 2: 100681. PMID 34337446 DOI: 10.1016/j.xpro.2021.100681   
2021 Liu S, Trejo-Arellano MS, Qiu Y, Eklund DM, Köhler C, Hennig L. H2A ubiquitination is essential for Polycomb Repressive Complex 1-mediated gene regulation in Marchantia polymorpha. Genome Biology. 22: 253. PMID 34465381 DOI: 10.1186/s13059-021-02476-y   
2021 Jos S, Gogoi H, Prasad TK, Hurakadli MA, Kamariah N, Padmanabhan B, Padavattan S. Molecular insights into α-synuclein interaction with individual human core histones, linker histone, and dsDNA. Protein Science : a Publication of the Protein Society. 30: 2121-2131. PMID 34382268 DOI: 10.1002/pro.4167   
2021 Leo L, Colonna Romano N. Emerging Single-Cell Technological Approaches to Investigate Chromatin Dynamics and Centromere Regulation in Human Health and Disease. International Journal of Molecular Sciences. 22. PMID 34445507 DOI: 10.3390/ijms22168809   
2021 Xu B, Wang H, Wright S, Hyle J, Zhang Y, Shao Y, Niu M, Fan Y, Rosikiewicz W, Djekidel MN, Peng J, Lu R, Li C. Acute depletion of CTCF rewires genome-wide chromatin accessibility. Genome Biology. 22: 244. PMID 34429148 DOI: 10.1186/s13059-021-02466-0   
2021 Deng Q, Lu H, Wu M, Ran M, Wang Z, Wei D, Tang Q. [Molecular mechanisms of RPD3 family members in regulating plant development and environmental responses]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 2645-2657. PMID 34472285 DOI: 10.13345/j.cjb.200534   
2021 Zhang Y, Brown K, Yu Y, Ibrahim Z, Zandian M, Xuan H, Ingersoll S, Lee T, Ebmeier CC, Liu J, Panne D, Shi X, Ren X, Kutateladze TG. Nuclear condensates of p300 formed though the structured catalytic core can act as a storage pool of p300 with reduced HAT activity. Nature Communications. 12: 4618. PMID 34326347 DOI: 10.1038/s41467-021-24950-8   
2021 Zheng S, Bi Y, Chen H, Gong B, Jia S, Li H. Molecular basis for bipartite recognition of histone H3 by the PZP domain of PHF14. Nucleic Acids Research. PMID 34365506 DOI: 10.1093/nar/gkab670   
2021 Zhang S, Zhan L, Li X, Yang Z, Luo Y, Zhao H. Preclinical and clinical progress for HDAC as a putative target for epigenetic remodeling and functionality of immune cells. International Journal of Biological Sciences. 17: 3381-3400. PMID 34512154 DOI: 10.7150/ijbs.62001