| Year |
Citation |
Score |
| 2024 |
Telmer CA, Karimi K, Chess MM, Agalakov S, Arshinoff BI, Lotay V, Wang DZ, Chu S, Pells TJ, Vize PD, Hinman VF, Ettensohn CA. Echinobase: a resource to support the echinoderm research community. Genetics. PMID 38262680 DOI: 10.1093/genetics/iyae002 |
0.341 |
|
| 2023 |
Fisher M, James-Zorn C, Ponferrada V, Bell AJ, Sundararaj N, Segerdell E, Chaturvedi P, Bayyari N, Chu S, Pells T, Lotay V, Agalakov S, Wang DZ, Arshinoff BI, Foley S, ... ... Vize PD, et al. Xenbase: Key Features and Resources of the Xenopus Model Organism Knowledgebase. Genetics. PMID 36755307 DOI: 10.1093/genetics/iyad018 |
0.62 |
|
| 2022 |
Zahn N, James-Zorn C, Ponferrada VG, Adams DS, Grzymkowski J, Buchholz DR, Nascone-Yoder NM, Horb M, Moody SA, Vize PD, Zorn AM. Normal Table of Xenopus development: a new graphical resource. Development (Cambridge, England). 149. PMID 35833709 DOI: 10.1242/dev.200356 |
0.596 |
|
| 2022 |
Fisher ME, Segerdell E, Matentzoglu N, Nenni MJ, Fortriede JD, Chu S, Pells TJ, Osumi-Sutherland D, Chaturvedi P, James-Zorn C, Sundararaj N, Lotay VS, Ponferrada V, Wang DZ, Kim E, ... ... Vize PD, et al. The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. Bmc Bioinformatics. 23: 99. PMID 35317743 DOI: 10.1186/s12859-022-04636-8 |
0.534 |
|
| 2021 |
Arshinoff BI, Cary GA, Karimi K, Foley S, Agalakov S, Delgado F, Lotay VS, Ku CJ, Pells TJ, Beatman TR, Kim E, Cameron RA, Vize PD, Telmer CA, Croce JC, et al. Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. Nucleic Acids Research. PMID 34791383 DOI: 10.1093/nar/gkab1005 |
0.3 |
|
| 2019 |
Fortriede JD, Pells TJ, Chu S, Chaturvedi P, Wang D, Fisher ME, James-Zorn C, Wang Y, Nenni MJ, Burns KA, Lotay VS, Ponferrada VG, Karimi K, Zorn AM, Vize PD. Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. Nucleic Acids Research. PMID 31733057 DOI: 10.1093/nar/gkz933 |
0.628 |
|
| 2019 |
Wuitchik DM, Wang D, Pells TJ, Karimi K, Ward S, Vize PD. Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef-building coral. Molecular Ecology. PMID 31294494 DOI: 10.1111/Mec.15173 |
0.73 |
|
| 2019 |
Nenni MJ, Fisher ME, James-Zorn C, Pells TJ, Ponferrada V, Chu S, Fortriede JD, Burns KA, Wang Y, Lotay VS, Wang DZ, Segerdell E, Chaturvedi P, Karimi K, Vize PD, et al. Xenbase: Facilitating the Use of to Model Human Disease. Frontiers in Physiology. 10: 154. PMID 30863320 DOI: 10.3389/fphys.2019.00154 |
0.543 |
|
| 2018 |
Oldach MJ, Vize PD. De novo assembly and annotation of the Acropora gemmifera transcriptome. Marine Genomics. 40: 9-12. PMID 32420879 DOI: 10.1016/j.margen.2017.12.007 |
0.789 |
|
| 2018 |
Karimi K, Wuitchik DM, Oldach MJ, Vize PD. Distinguishing Species Using GC Contents in Mixed DNA or RNA Sequences. Evolutionary Bioinformatics Online. 14: 1176934318788866. PMID 30038485 DOI: 10.1177/1176934318788866 |
0.675 |
|
| 2018 |
James-Zorn C, Ponferrada V, Fisher ME, Burns K, Fortriede J, Segerdell E, Karimi K, Lotay V, Wang DZ, Chu S, Pells T, Wang Y, Vize PD, Zorn A. Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database. Methods in Molecular Biology (Clifton, N.J.). 1757: 251-305. PMID 29761462 DOI: 10.1007/978-1-4939-7737-6_10 |
0.648 |
|
| 2017 |
Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD. Xenbase: a genomic, epigenomic and transcriptomic model organism database. Nucleic Acids Research. PMID 29059324 DOI: 10.1093/nar/gkx936 |
0.596 |
|
| 2017 |
Oldach MJ, Workentine M, Matz MV, Fan TY, Vize PD. Transcriptome dynamics over a lunar month in a broadcast spawning Acroporid coral. Molecular Ecology. PMID 28141890 DOI: 10.1111/Mec.14043 |
0.766 |
|
| 2016 |
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, ... ... Vize PD, et al. Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 538: 336-343. PMID 27762356 DOI: 10.1038/Nature19840 |
0.76 |
|
| 2016 |
Brady AK, Willis BL, Harder LD, Vize PD. Lunar Phase Modulates Circadian Gene Expression Cycles in the Broadcast Spawning Coral Acropora millepora. The Biological Bulletin. 230: 130-42. PMID 27132135 DOI: 10.1086/Bblv230N2P130 |
0.635 |
|
| 2016 |
Vize PD, Zorn AM. Xenopus genomic data and browser resources. Developmental Biology. PMID 27039265 DOI: 10.1016/j.ydbio.2016.03.030 |
0.593 |
|
| 2015 |
James-Zorn C, Ponferrada VG, Burns KA, Fortriede JD, Lotay VS, Liu Y, Karpinka JB, Karimi K, Zorn AM, Vize PD. Xenbase; core features, data acquisition and data processing. Genesis (New York, N.Y. : 2000). PMID 26150211 DOI: 10.1002/dvg.22873 |
0.593 |
|
| 2015 |
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Vize PD, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033 |
0.561 |
|
| 2015 |
Karpinka JB, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Karimi K, Zorn AM, Vize PD. Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes. Nucleic Acids Research. 43: D756-63. PMID 25313157 DOI: 10.1093/nar/gku956 |
0.607 |
|
| 2014 |
Reichman JR, Vize PD. Separate introns gained within short and long soluble peridinin-chlorophyll a-protein genes during radiation of Symbiodinium (Dinophyceae) clade A and B lineages. Plos One. 9: e110608. PMID 25330037 DOI: 10.1371/Journal.Pone.0110608 |
0.73 |
|
| 2013 |
Segerdell E, Ponferrada VG, James-Zorn C, Burns KA, Fortriede JD, Dahdul WM, Vize PD, Zorn AM. Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. Journal of Biomedical Semantics. 4: 31. PMID 24139024 DOI: 10.1186/2041-1480-4-31 |
0.599 |
|
| 2013 |
Davies SW, Matz MV, Vize PD. Ecological complexity of coral recruitment processes: effects of invertebrate herbivores on coral recruitment and growth depends upon substratum properties and coral species. Plos One. 8: e72830. PMID 24039807 DOI: 10.1371/Journal.Pone.0072830 |
0.728 |
|
| 2013 |
Bowes JB, Snyder KA, James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Bhattacharyya B, Zorn AM, Vize PD. The Xenbase literature curation process. Database : the Journal of Biological Databases and Curation. 2013: bas046. PMID 23303299 DOI: 10.1093/database/bas046 |
0.592 |
|
| 2013 |
James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Segerdell EJ, Lee J, Snyder K, Bhattacharyya B, Karpinka JB, Fortriede J, Bowes JB, Zorn AM, Vize PD. Xenbase: expansion and updates of the Xenopus model organism database. Nucleic Acids Research. 41: D865-70. PMID 23125366 DOI: 10.1093/nar/gks1025 |
0.651 |
|
| 2012 |
Daniel Hilton J, Brady AK, Spaho SA, Vize PD. Photoreception and signal transduction in corals: Proteomic and behavioral evidence for cytoplasmic calcium as a mediator of light responsivity Biological Bulletin. 223: 291-299. PMID 23264475 DOI: 10.1086/Bblv223N3P291 |
0.554 |
|
| 2011 |
Brady AK, Snyder KA, Vize PD. Circadian cycles of gene expression in the coral, Acropora millepora. Plos One. 6: e25072. PMID 21949855 DOI: 10.1371/journal.pone.0025072 |
0.58 |
|
| 2011 |
Mccoy KE, Zhou X, Vize PD. Non-canonical wnt signals antagonize and canonical wnt signals promote cell proliferation in early kidney development Developmental Dynamics. 240: 1558-1566. PMID 21465621 DOI: 10.1002/dvdy.22626 |
0.487 |
|
| 2010 |
Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, ... ... Vize PD, et al. The genome of the Western clawed frog Xenopus tropicalis. Science (New York, N.Y.). 328: 633-6. PMID 20431018 DOI: 10.1126/Science.1183670 |
0.693 |
|
| 2010 |
Bowes JB, Snyder KA, Segerdell E, Jarabek CJ, Azam K, Zorn AM, Vize PD. Xenbase: gene expression and improved integration. Nucleic Acids Research. 38: D607-12. PMID 19884130 DOI: 10.1093/nar/gkp953 |
0.618 |
|
| 2010 |
Brady AK, Hilton JD, Vize PD. Erratum to: Coral spawn timing is a direct response to solar light cycles and is not an entrained circadian response Coral Reefs. 29: 535-535. DOI: 10.1007/s00338-010-0589-2 |
0.539 |
|
| 2009 |
Vize PD, McCoy KE, Zhou X. Multichannel wholemount fluorescent and fluorescent/chromogenic in situ hybridization in Xenopus embryos. Nature Protocols. 4: 975-983. PMID 19498377 DOI: 10.1038/nprot.2009.69 |
0.571 |
|
| 2009 |
Brady AK, Hilton JD, Vize PD. Coral spawn timing is a direct response to solar light cycles and is not an entrained circadian response Coral Reefs. 28: 677-680. DOI: 10.1007/s00338-009-0498-4 |
0.539 |
|
| 2008 |
McCoy KE, Zhou X, Vize PD. Collectrin/tmem27 is expressed at high levels in all segments of the developing Xenopus pronephric nephron and in the Wolffian duct Gene Expression Patterns. 8: 271-274. PMID 18226983 DOI: 10.1016/j.gep.2007.12.002 |
0.521 |
|
| 2008 |
Bowes JB, Snyder KA, Segerdell E, Gibb R, Jarabek C, Noumen E, Pollet N, Vize PD. Xenbase: a Xenopus biology and genomics resource. Nucleic Acids Research. 36: D761-7. PMID 17984085 DOI: 10.1093/Nar/Gkm826 |
0.334 |
|
| 2005 |
Vize PD, Embesi JA, Nickell M, Brown DP, Hagman DK. Tight temporal consistency of coral mass spawning at the Flower Garden Banks, Gulf of Mexico, from 1997-2003 Gulf of Mexico Science. 23: 107-114. |
0.63 |
|
| 2003 |
Reichman JR, Wilcox TP, Vize PD. PCP gene family in Symbiodinium from Hippopus hippopus: low levels of concerted evolution, isoform diversity, and spectral tuning of chromophores. Molecular Biology and Evolution. 20: 2143-54. PMID 12949129 DOI: 10.1093/Molbev/Msg233 |
0.772 |
|
| 2003 |
Vize PD, Carroll TJ, Wallingford JB. Induction, Development, and Physiology of the Pronephric Tubules The Kidney: From Normal Development to Congenital Disease. 19-50. DOI: 10.1016/B978-012722441-1/50005-1 |
0.496 |
|
| 2001 |
Vize PD. Online analysis of development Bioessays. 23: 549-554. PMID 11385635 DOI: 10.1002/bies.1075 |
0.338 |
|
| 2001 |
Lu P, Barad M, Vize PD. Xenopus p63 expression in early ectoderm and neurectoderm. Mechanisms of Development. 102: 275-8. PMID 11287210 DOI: 10.1016/S0925-4773(01)00315-X |
0.722 |
|
| 1999 |
Matsumura I, Wallingford JB, Surana NK, Vize PD, Ellington AD. Directed evolution of the surface chemistry of the reporter enzyme β- glucuronidase Nature Biotechnology. 17: 696-701. PMID 10404164 DOI: 10.1038/10910 |
0.492 |
|
| 1999 |
Carroll TJ, Wallingford JB, Vize PD. Dynamic patterns of gene expression in the developing pronephros of Xenopus laevis Developmental Genetics. 24: 199-207. PMID 10322628 DOI: 10.1002/(Sici)1520-6408(1999)24:3/4<199::Aid-Dvg3>3.0.Co;2-D |
0.577 |
|
| 1999 |
Carroll T, Wallingford J, Seufert D, Vize PD. Molecular regulation of pronephric development. Current Topics in Developmental Biology. 44: 67-100. PMID 9891877 DOI: 10.1016/S0070-2153(08)60467-6 |
0.677 |
|
| 1998 |
Wallingford JB, Carroll TJ, Vize PD. Precocious expression of the Wilms' tumor gene xWT1 inhibits embryonic kidney development in Xenopus laevis Developmental Biology. 202: 103-112. PMID 9758706 DOI: 10.1006/Dbio.1998.8989 |
0.536 |
|
| 1998 |
Hagman DK, Gittings SR, Vize PD. Fertilization in broadcast-spawning corals of the Flower Garden Banks national marine sanctuary Gulf of Mexico Science. 16: 180-187. |
0.643 |
|
| 1997 |
Wallingford JB, Seufert DW, Virta VC, Vize PD. p53 activity is essential for normal development in Xenopus. Current Biology : Cb. 7: 747-57. PMID 9368757 DOI: 10.1016/S0960-9822(06)00333-2 |
0.492 |
|
| 1997 |
Vize PD, Seufert DW, Carroll TJ, Wallingford JB. Model systems for the study of kidney development: Use of the pronephros in the analysis of organ induction and patterning Developmental Biology. 188: 189-204. PMID 9268568 DOI: 10.1006/Dbio.1997.8629 |
0.525 |
|
| 1996 |
Vize PD. DNA sequences mediating the transcriptional response of the Mix.2 homeobox gene to mesoderm induction Developmental Biology. 177: 226-231. PMID 8660890 DOI: 10.1006/dbio.1996.0158 |
0.304 |
|
| 1994 |
Vize PD, Thomsen GH. Vg1 and regional specification in vertebrates: a new role for an old molecule. Trends in Genetics : Tig. 10: 371-6. PMID 7985242 DOI: 10.1016/0168-9525(94)90134-1 |
0.641 |
|
| 1991 |
Vize PD, Melton DA, Hemmati-Brivanlou A, Harland RM. Assays for gene function in developing Xenopus embryos. Methods in Cell Biology. 36: 367-87. PMID 1811145 DOI: 10.1016/S0091-679X(08)60288-5 |
0.643 |
|
| 1988 |
Vize PD, Michalska AE, Ashman R, Lloyd B, Stone BA, Quinn P, Wells JR, Seamark RF. Introduction of a porcine growth hormone fusion gene into transgenic pigs promotes growth. Journal of Cell Science. 90: 295-300. PMID 3246521 |
0.714 |
|
| 1987 |
Vize PD, Wells JRE. Isolation and characterization of the porcine growth hormone gene Gene. 55: 339-344. PMID 3666458 DOI: 10.1016/0378-1119(87)90294-0 |
0.731 |
|
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