| Year |
Citation |
Score |
| 2023 |
Xu X, Egger M, Li C, Chen H, Micura R, Ren A. Structure-based investigations of the NAD+-II riboswitch. Nucleic Acids Research. 51: 54-67. PMID 36610789 DOI: 10.1093/nar/gkac1227 |
0.385 |
|
| 2022 |
Zheng L, Song Q, Xu X, Shen X, Li C, Li H, Chen H, Ren A. Structure-based insights into recognition and regulation of SAM-sensing riboswitches. Science China. Life Sciences. PMID 36459353 DOI: 10.1007/s11427-022-2188-7 |
0.341 |
|
| 2022 |
Zheng L, Liu J, Niu L, Kamran M, Yang AWH, Jolma A, Dai Q, Hughes TR, Patel DJ, Zhang L, Prasanth SG, Yu Y, Ren A, Lai EC. Distinct structural bases for sequence-specific DNA binding by mammalian BEN domain proteins. Genes & Development. PMID 35144965 DOI: 10.1101/gad.348993.121 |
0.48 |
|
| 2021 |
Huang K, Chen X, Li C, Song Q, Li H, Zhu L, Yang Y, Ren A. Structure-based investigation of fluorogenic Pepper aptamer. Nature Chemical Biology. PMID 34725509 DOI: 10.1038/s41589-021-00884-6 |
0.354 |
|
| 2021 |
Xu X, Egger M, Chen H, Bartosik K, Micura R, Ren A. Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition. Nucleic Acids Research. PMID 34125892 DOI: 10.1093/nar/gkab486 |
0.433 |
|
| 2020 |
Chen H, Egger M, Xu X, Flemmich L, Krasheninina O, Sun A, Micura R, Ren A. Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Research. PMID 33170270 DOI: 10.1093/nar/gkaa1029 |
0.343 |
|
| 2020 |
Miao Z, Adamiak RW, Antczak M, Boniecki MJ, Bujnicki JM, Chen SJ, Cheng CY, Cheng Y, Chou FC, Das R, Dokholyan NV, Ding F, Geniesse C, Jiang Y, Joshi A, ... ... Ren A, et al. RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers. Rna (New York, N.Y.). PMID 32371455 DOI: 10.1261/Rna.075341.120 |
0.541 |
|
| 2019 |
Sun A, Gasser C, Li F, Chen H, Mair S, Krasheninina O, Micura R, Ren A. SAM-VI riboswitch structure and signature for ligand discrimination. Nature Communications. 10: 5728. PMID 31844059 DOI: 10.2210/Pdb6Lax/Pdb |
0.464 |
|
| 2019 |
Teplova M, Falschlunger C, Krasheninina O, Egger M, Ren A, Patel DJ, Micura R. On crucial roles of two hydrated Mg2+ ions in reaction catalysis of the pistol ribozyme. Angewandte Chemie (International Ed. in English). PMID 31804735 DOI: 10.2210/Pdb6Ufk/Pdb |
0.579 |
|
| 2019 |
Sun A, Huang K, Zheng L, Ren A. Strategies for understanding RNA recognition by X-ray crystallography and NMR methods. Methods in Enzymology. 623: 229-248. PMID 31239048 DOI: 10.1016/Bs.Mie.2019.05.024 |
0.371 |
|
| 2019 |
Zheng L, Falschlunger C, Huang K, Mairhofer E, Yuan S, Wang J, Patel DJ, Micura R, Ren A. Hatchet ribozyme structure and implications for cleavage mechanism. Proceedings of the National Academy of Sciences of the United States of America. PMID 31088965 DOI: 10.1073/Pnas.1902413116 |
0.628 |
|
| 2017 |
Ren A, Micura R, Patel DJ. Structure-based mechanistic insights into catalysis by small self-cleaving ribozymes. Current Opinion in Chemical Biology. 41: 71-83. PMID 29107885 DOI: 10.1016/J.Cbpa.2017.09.017 |
0.602 |
|
| 2017 |
Neuner S, Falschlunger C, Fuchs E, Himmelstoss M, Ren A, Patel D, Micura R. Atom-specific mutagenesis reveals structural and catalytic roles for active site-adenosine and hydrated Mg2+ in pistol ribozyme. Angewandte Chemie (International Ed. in English). PMID 29098759 DOI: 10.1002/Anie.201708679 |
0.559 |
|
| 2017 |
Zheng L, Mairhofer E, Teplova M, Zhang Y, Ma J, Patel DJ, Micura R, Ren A. Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme. Nature Communications. 8: 1180. PMID 29081514 DOI: 10.1038/S41467-017-01276-Y |
0.68 |
|
| 2017 |
Miao Z, Adamiak RW, Antczak M, Batey RT, Becka AJ, Biesiada M, Boniecki MJ, Bujnicki J, Chen SJ, Cheng CY, Chou FC, Ferré-D'Amaré AR, Das R, Dawson WK, Feng D, ... ... Ren A, et al. RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme. Rna (New York, N.Y.). PMID 28138060 DOI: 10.1261/Rna.060368.116 |
0.552 |
|
| 2016 |
Ren A, Vušurović N, Gebetsberger J, Gao P, Juen M, Kreutz C, Micura R, Patel DJ. Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage. Nature Chemical Biology. PMID 27398999 DOI: 10.1038/Nchembio.2125 |
0.661 |
|
| 2015 |
Ren A, Xue Y, Peselis A, Serganov A, Al-Hashimi HM, Patel DJ. Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch. Cell Reports. 13: 1800-1813. PMID 26655897 DOI: 10.1016/J.Celrep.2015.10.062 |
0.625 |
|
| 2015 |
Košutić M, Neuner S, Ren A, Flür S, Wunderlich C, Mairhofer E, Vušurović N, Seikowski J, Breuker K, Höbartner C, Patel DJ, Kreutz C, Micura R. A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class. Angewandte Chemie (International Ed. in English). PMID 26473980 DOI: 10.1002/Anie.201506601 |
0.57 |
|
| 2015 |
Ren A, Rajashankar KR, Patel DJ. Global RNA Fold and Molecular Recognition for a pfl Riboswitch Bound to ZMP, a Master Regulator of One-Carbon Metabolism. Structure (London, England : 1993). PMID 26118534 DOI: 10.1016/J.Str.2015.05.016 |
0.567 |
|
| 2015 |
Ren A, Wang XC, Kellenberger CA, Rajashankar KR, Jones RA, Hammond MC, Patel DJ. Structural basis for molecular discrimination by a 3',3'-cGAMP sensing riboswitch. Cell Reports. 11: 1-12. PMID 25818298 DOI: 10.1016/J.Celrep.2015.03.004 |
0.571 |
|
| 2015 |
Dai Q, Ren A, Westholm JO, Duan H, Patel DJ, Lai EC. Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family. Genes & Development. 29: 48-62. PMID 25561495 DOI: 10.1101/Gad.252122.114 |
0.528 |
|
| 2014 |
Ren A, Košuti? M, Rajashankar KR, Frener M, Santner T, Westhof E, Micura R, Patel DJ. In-line alignment and Mg²⁺ coordination at the cleavage site of the env22 twister ribozyme. Nature Communications. 5: 5534. PMID 25410397 DOI: 10.1038/Ncomms6534 |
0.626 |
|
| 2014 |
Ren A, Patel DJ. c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets. Nature Chemical Biology. 10: 780-6. PMID 25086509 DOI: 10.1038/Nchembio.1606 |
0.577 |
|
| 2013 |
Dai Q, Ren A, Westholm JO, Serganov AA, Patel DJ, Lai EC. The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors. Genes & Development. 27: 602-14. PMID 23468431 DOI: 10.1101/Gad.213314.113 |
0.532 |
|
| 2012 |
Ren A, Rajashankar KR, Patel DJ. Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch. Nature. 486: 85-9. PMID 22678284 DOI: 10.1038/Nature11152 |
0.576 |
|
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