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Victoria Birkedal - Publications

Affiliations: 
Aarhus University, Aarhus, Denmark 
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kristoffersen EL, Coletta A, Lund LM, Schiøtt B, Birkedal V. Inhibited complete folding of consecutive human telomeric G-quadruplexes. Nucleic Acids Research. PMID 36715345 DOI: 10.1093/nar/gkad004  0.376
2020 Kristoffersen EL, Coletta A, Lund L, Schiøtt B, Birkedal V. Folding Kinetics of Multiple G-Quadruplex Telomeric DNA Structures Biophysical Journal. 118: 335a. DOI: 10.1016/J.Bpj.2019.11.1868  0.454
2019 Jepsen MDE, Sørensen RS, Maffeo C, Aksimentiev A, Kjems J, Birkedal V. Single molecule analysis of structural fluctuations in DNA nanostructures. Nanoscale. 11: 18475-18482. PMID 31577314 DOI: 10.1039/C9Nr03826D  0.511
2019 Kristoffersen EL, Birkedal V. Stable Off-Path Structures in the Folding Dynamics of Two Consecutive Telomeric DNA G-Quadruplexes Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.764  0.461
2018 Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Adariani SR, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, et al. Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. PMID 30327572 DOI: 10.1038/S41592-018-0193-X  0.321
2018 Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Rezaei Adariani S, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, et al. Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. 15: 669-676. PMID 30171252 DOI: 10.1038/S41592-018-0085-0  0.406
2018 Selnihhin D, Sparvath SM, Preus S, Birkedal V, Andersen ES. Multi-Fluorophore DNA Origami Beacon as a Biosensing Platform. Acs Nano. PMID 29763544 DOI: 10.1021/Acsnano.8B01510  0.731
2018 Gudnason D, Madsen M, Krissanaprasit A, Gothelf KV, Birkedal V. Controlled aggregation of DNA functionalized poly(phenylene-vinylene). Chemical Communications (Cambridge, England). PMID 29696247 DOI: 10.1039/C8Cc00943K  0.332
2018 Kristoffersen EL, Aznauryan M, Birkedal V. Single-Molecule FRET Investigations of Tandem Human Telomeric G-Quadruplex Structures Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.3261  0.448
2017 Sprengel A, Lill P, Stegemann P, Bravo-Rodriguez K, Schöneweiß EC, Merdanovic M, Gudnason D, Aznauryan M, Gamrad L, Barcikowski S, Sanchez-Garcia E, Birkedal V, Gatsogiannis C, Ehrmann M, Saccà B. Tailored protein encapsulation into a DNA host using geometrically organized supramolecular interactions. Nature Communications. 8: 14472. PMID 28205515 DOI: 10.1038/Ncomms14472  0.428
2017 Aznauryan M, Birkedal V. Single - Molecule Fluorescence Microscopy of Folding Dynamics of G-Quadruplex DNA Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.1184  0.469
2016 Aznauryan M, Søndergaard S, Noer SL, Schiøtt B, Birkedal V. A direct view of the complex multi-pathway folding of telomeric G-quadruplexes. Nucleic Acids Research. PMID 27799468 DOI: 10.1093/Nar/Gkw1010  0.462
2016 Preus S, Hildebrandt LL, Birkedal V. Optimal Background Estimators in Single-Molecule FRET Microscopy. Biophysical Journal. 111: 1278-86. PMID 27653486 DOI: 10.1016/J.Bpj.2016.07.047  0.731
2016 Dyla M, Andersen J, Kjaergaard M, Birkedal V, Terry DS, Altman RB, Blanchard S, Nissen P, Knudsen CR. Engineering a prototypic P-type ATPase Listeria Monocytogenes Ca(2+)-ATPase 1 for single-molecule FRET studies. Bioconjugate Chemistry. PMID 27501274 DOI: 10.1021/Acs.Bioconjchem.6B00387  0.328
2016 Krissanaprasit A, Madsen M, Knudsen JB, Gudnason D, Surareungchai W, Birkedal V, Gothelf KV. Programmed Switching of Single Polymer Conformation on DNA Origami. Acs Nano. 10: 2243-50. PMID 26766635 DOI: 10.1021/Acsnano.5B06894  0.385
2016 Noer SL, Preus S, Gudnason D, Aznauryan M, Mergny JL, Birkedal V. Folding dynamics and conformational heterogeneity of human telomeric G-quadruplex structures in Na+ solutions by single molecule FRET microscopy. Nucleic Acids Research. 44: 464-71. PMID 26615192 DOI: 10.1093/Nar/Gkv1320  0.716
2016 Zhang Z, Birkedal V, Gothelf KV. Enzyme-free colorimetric detection systems based on the DNA strand displacement competition reaction New Journal of Physics. 18: 55002. DOI: 10.1088/1367-2630/18/5/055002  0.463
2016 Aznauryan M, Søndergaard S, Noer S, Schiøtt B, Birkedal V. Probing the Folding Dynamics of Human Telomeric G-Quadruplex with Single-Molecule FRET Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.2194  0.5
2016 Preus S, Hildebrandt LL, Birkedal V. Influence of the Background in Single Molecule FRET TIRF Microscopy Biophysical Journal. 110: 194a. DOI: 10.1016/J.Bpj.2015.11.1083  0.744
2015 Hildebrandt LL, Preus S, Birkedal V. Quantitative single molecule FRET efficiencies using TIRF microscopy Faraday Discussions. 184: 131-142. PMID 26416760 DOI: 10.1039/C5Fd00100E  0.748
2015 Knudsen JB, Liu L, Bank Kodal AL, Madsen M, Li Q, Song J, Woehrstein JB, Wickham SF, Strauss MT, Schueder F, Vinther J, Krissanaprasit A, Gudnason D, Smith AA, Ogaki R, ... ... Birkedal V, et al. Routing of individual polymers in designed patterns. Nature Nanotechnology. PMID 26322946 DOI: 10.1038/Nnano.2015.190  0.317
2015 Søndergaard S, Aznauryan M, Haustrup EK, Schiøtt B, Birkedal V, Corry B. Dynamics of Fluorescent Dyes Attached to G-Quadruplex DNA and their Effect on FRET Experiments. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 16: 2562-70. PMID 26174803 DOI: 10.1002/Cphc.201500271  0.463
2015 Preus S, Noer SL, Hildebrandt LL, Gudnason D, Birkedal V. ISMS: Single-molecule FRET microscopy software Nature Methods. 12: 593-594. PMID 26125588 DOI: 10.1038/Nmeth.3435  0.726
2015 Zadegan RM, Jepsen MD, Hildebrandt LL, Birkedal V, Kjems J. Construction of a fuzzy and Boolean logic gates based on DNA. Small (Weinheim An Der Bergstrasse, Germany). 11: 1811-7. PMID 25565140 DOI: 10.1002/Smll.201402755  0.429
2015 Jepsen M, Sørensen RS, Andersen ES, Kjems J, Birkedal V. Single Molecule FRET Analysis of the Closed and Open States of a DNA Origami Box Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.968  0.54
2015 Preus S, Hildebrandt L, Noer SL, Birkedal V. Fast and User-Friendly Single-Molecule FRET Microscopy Software Biophysical Journal. 108: 163a. DOI: 10.1016/J.Bpj.2014.11.898  0.756
2015 Birkedal V. Insights into Nucleic Acids Structural Dynamics with Single Molecule FRET Studies Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.057  0.581
2015 Zadegan RM, Jepsen MDE, Hildebrandt LL, Birkedal V, Kjems J. Biosensors: Construction of a Fuzzy and Boolean Logic Gates Based on DNA (Small 15/2015) Small. 11: 1860-1860. DOI: 10.1002/Smll.201570089  0.348
2014 Zhang Z, Hejesen C, Kjelstrup MB, Birkedal V, Gothelf KV. A DNA-mediated homogeneous binding assay for proteins and small molecules. Journal of the American Chemical Society. 136: 11115-20. PMID 25051012 DOI: 10.1021/Ja505519B  0.412
2014 Hildebrandt LL, Preus S, Zhang Z, Voigt NV, Gothelf KV, Birkedal V. Single molecule FRET analysis of the 11 discrete steps of a DNA actuator. Journal of the American Chemical Society. 136: 8957-62. PMID 24857342 DOI: 10.1021/Ja502580T  0.758
2014 Kragh SL, Preus S, Gudnason D, Mergny J, Birkedal V. Structural Dynamics and Polymorphism of Telomeric G-Quadruplex DNA Structures Biophysical Journal. 106: 65a. DOI: 10.1016/J.Bpj.2013.11.438  0.742
2014 Hildebrandt LL, Zhang Z, Preus S, Gothelf KV, Birkedal V. Function and Movement of a DNA Actuator Investigated by Single Molecule Fret Microscopy Biophysical Journal. 106: 226a. DOI: 10.1016/J.Bpj.2013.11.1321  0.753
2013 Juul S, Iacovelli F, Falconi M, Kragh SL, Christensen B, Frøhlich R, Franch O, Kristoffersen EL, Stougaard M, Leong KW, Ho YP, Sørensen ES, Birkedal V, Desideri A, Knudsen BR. Temperature-controlled encapsulation and release of an active enzyme in the cavity of a self-assembled DNA nanocage. Acs Nano. 7: 9724-34. PMID 24168393 DOI: 10.1021/Nn4030543  0.451
2013 Krüger AC, Birkedal V. Single molecule FRET data analysis procedures for FRET efficiency determination: probing the conformations of nucleic acid structures. Methods (San Diego, Calif.). 64: 36-42. PMID 23583888 DOI: 10.1016/J.Ymeth.2013.04.001  0.483
2013 Beerens N, Jepsen MD, Nechyporuk-Zloy V, Krüger AC, Darlix JL, Kjems J, Birkedal V. Role of the primer activation signal in tRNA annealing onto the HIV-1 genome studied by single-molecule FRET microscopy. Rna (New York, N.Y.). 19: 517-26. PMID 23404895 DOI: 10.1261/Rna.035733.112  0.341
2013 Krüger AC, Hildebrandt LL, Kragh SL, Birkedal V. Structural dynamics of nucleic acids by single-molecule FRET. Methods in Cell Biology. 113: 1-37. PMID 23317895 DOI: 10.1016/B978-0-12-407239-8.00001-X  0.464
2012 Zadegan RM, Jepsen MD, Thomsen KE, Okholm AH, Schaffert DH, Andersen ES, Birkedal V, Kjems J. Construction of a 4 zeptoliters switchable 3D DNA box origami. Acs Nano. 6: 10050-3. PMID 23030709 DOI: 10.1021/Nn303767B  0.481
2012 Jepsen M, Beerens N, Krüger AC, Kjems J, Birkedal V. tRNA Annealing onto the HIV-1 Genome Studied by FRET Spectroscopy and Microscopy Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.1533  0.335
2012 Kristiansen M, Kryger MBL, Zhang Z, Voigt NV, Birkedal V, Gothelf KV. Back Cover Picture: Extended DNA Tile Actuators (ChemPlusChem 8/2012) Chempluschem. 77: 730-730. DOI: 10.1002/Cplu.201290037  0.411
2012 Kristiansen M, Kryger MBL, Zhang Z, Voigt NV, Birkedal V, Gothelf KV. Extended DNA Tile Actuators Chempluschem. 77: 636-642. DOI: 10.1002/Cplu.201200149  0.427
2011 Birkedal V, Dong M, Golas MM, Sander B, Andersen ES, Gothelf KV, Besenbacher F, Kjems J. Single molecule microscopy methods for the study of DNA origami structures. Microscopy Research and Technique. 74: 688-98. PMID 21698717 DOI: 10.1002/Jemt.20962  0.536
2011 Zhang Z, Olsen EM, Kryger M, Voigt NV, Tørring T, Gültekin E, Nielsen M, MohammadZadegan R, Andersen ES, Nielsen MM, Kjems J, Birkedal V, Gothelf KV. A DNA tile actuator with eleven discrete states. Angewandte Chemie (International Ed. in English). 50: 3983-7. PMID 21425422 DOI: 10.1002/Anie.201007642  0.389
2011 Birkedal V, Krüger AC, Besenbacher F. Single Molecule FRET Microscopy of Immobilized DNA Molecules: Keeping Track of Dye Integrity and Stoichiometry Biophysical Journal. 100: 75a-76a. DOI: 10.1016/J.Bpj.2010.12.618  0.58
2010 Krüger AC, Raarup MK, Nielsen MM, Kristensen M, Besenbacher F, Kjems J, Birkedal V. Interaction of hnRNP A1 with telomere DNA G-quadruplex structures studied at the single molecule level. European Biophysics Journal : Ebj. 39: 1343-50. PMID 20213319 DOI: 10.1007/S00249-010-0587-X  0.484
2009 Andersen ES, Dong M, Nielsen MM, Jahn K, Subramani R, Mamdouh W, Golas MM, Sander B, Stark H, Oliveira CL, Pedersen JS, Birkedal V, Besenbacher F, Gothelf KV, Kjems J. Self-assembly of a nanoscale DNA box with a controllable lid. Nature. 459: 73-6. PMID 19424153 DOI: 10.1038/Nature07971  0.455
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