Frederick I. Archer - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 

43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Morin PA, Martien KK, Lang AR, Hancock-Hanser BL, Pease VL, Robertson KM, Sattler M, Slikas E, Rosel PE, Baker CS, Taylor BL, Archer FI. Guidelines and quantitative standards for improved cetacean taxonomy using full mitochondrial genomes. The Journal of Heredity. PMID 37647537 DOI: 10.1093/jhered/esad049  0.77
2023 Sremba AL, Martin AR, Wilson P, Cypriano-Souza AL, Buss DL, Hart T, Engel MH, Bonatto SL, Rosenbaum H, Collins T, Olavarría C, Archer FI, Steel D, Jackson JA, Baker CS. Diversity of mitochondrial DNA in three species of great whales before and after modern whaling. The Journal of Heredity. PMID 37578073 DOI: 10.1093/jhered/esad048  0.403
2023 Louis M, Korlević P, Nykänen M, Archer F, Berrow S, Brownlow A, Lorenzen ED, O'Brien J, Post K, Racimo F, Rogan E, Rosel PE, Sinding MS, van der Es H, Wales N, et al. Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters. Nature Communications. 14: 4020. PMID 37463880 DOI: 10.1038/s41467-023-39532-z  0.66
2023 Buss DL, Atmore LM, Zicos MH, Goodall-Copestake WP, Brace S, Archer FI, Baker CS, Barnes I, Carroll EL, Hart T, Kitchener AC, Sabin R, Sremba AL, Weir CR, Jackson JA. Historical Mitogenomic Diversity and Population Structuring of Southern Hemisphere Fin Whales. Genes. 14. PMID 37239398 DOI: 10.3390/genes14051038  0.455
2022 Hoban S, Archer FI, Bertola LD, Bragg JG, Breed MF, Bruford MW, Coleman MA, Ekblom R, Funk WC, Grueber CE, Hand BK, Jaffé R, Jensen E, Johnson JS, Kershaw F, et al. Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition. Biological Reviews of the Cambridge Philosophical Society. PMID 35415952 DOI: 10.1111/brv.12852  0.394
2021 Louis M, Galimberti M, Archer F, Berrow S, Brownlow A, Fallon R, Nykänen M, O'Brien J, Roberston KM, Rosel PE, Simon-Bouhet B, Wegmann D, Fontaine MC, Foote AD, Gaggiotti OE. Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins. Science Advances. 7: eabg1245. PMID 34705499 DOI: 10.1126/sciadv.abg1245  0.621
2021 Thomson AI, Archer FI, Coleman MA, Gajardo G, Goodall-Copestake WP, Hoban S, Laikre L, Miller AD, O'Brien D, Pérez-Espona S, Segelbacher G, Serrão EA, Sjøtun K, Stanley MS. Charting a course for genetic diversity in the UN Decade of Ocean Science. Evolutionary Applications. 14: 1497-1518. PMID 34178100 DOI: 10.1111/eva.13224  0.312
2020 Banerjee SM, Komoroske LM, Frey A, Hancock-Hanser B, Morin PA, Archer FI, Roden S, Gaos A, Liles MJ, Dutton PH. Single nucleotide polymorphism markers for genotyping hawksbill turtles (Eretmochelys imbricata) Conservation Genetics Resources. 12: 353-356. DOI: 10.1007/S12686-019-01112-Z  0.351
2020 Rankin S, Oedekoven C, Archer F. Mark recapture distance sampling: using acoustics to estimate the fraction of dolphins missed by observers during shipboard line-transect surveys Environmental and Ecological Statistics. 27: 233-251. DOI: 10.1007/S10651-020-00443-7  0.324
2019 Leslie MS, Archer FI, Morin PA. Mitogenomic differentiation in spinner (Stenella longirostris) and pantropical spotted dolphins (S. attenuata) from the eastern tropical Pacific Ocean Marine Mammal Science. 35: 522-551. DOI: 10.1111/Mms.12545  0.657
2019 Archer FI, Brownell RL, Hancock-Hanser BL, Morin PA, Robertson KM, Sherman KK, Calambokidis J, Urbán R J, Rosel PE, Mizroch SA, Panigada S, Taylor BL. Revision of fin whale Balaenoptera physalus (Linnaeus, 1758) subspecies using genetics Journal of Mammalogy. 100: 1653-1670. DOI: 10.1093/Jmammal/Gyz121  0.685
2018 Milligan BG, Archer FI, Ferchaud AL, Hand BK, Kierepka EM, Waples RS. Disentangling genetic structure for genetic monitoring of complex populations. Evolutionary Applications. 11: 1149-1161. PMID 30026803 DOI: 10.1111/Eva.12622  0.414
2018 Jost L, Archer F, Flanagan S, Gaggiotti O, Hoban S, Latch E. Differentiation measures for conservation genetics. Evolutionary Applications. 11: 1139-1148. PMID 30026802 DOI: 10.1111/Eva.12590  0.397
2017 Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL. Meta-mass shift chemical profiling of metabolomes from coral reefs. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078340 DOI: 10.1073/Pnas.1710248114  0.325
2017 Archer FI, Martien KK, Taylor BL. Diagnosability of mtDNA with Random Forests: Using sequence data to delimit subspecies Marine Mammal Science. 33: 101-131. DOI: 10.1111/Mms.12414  0.446
2017 Rosel PE, Taylor BL, Hancock-Hanser BL, Morin PA, Archer FI, Lang AR, Mesnick SL, Pease VL, Perrin WF, Robertson KM, Leslie MS, Berta A, Cipriano F, Parsons KM, Viricel A, et al. A review of molecular genetic markers and analytical approaches that have been used for delimiting marine mammal subspecies and species Marine Mammal Science. 33: 56-75. DOI: 10.1111/Mms.12412  0.759
2017 Taylor BL, Archer FI, Martien KK, Rosel PE, Hancock-Hanser BL, Lang AR, Leslie MS, Mesnick SL, Morin PA, Pease VL, Perrin WF, Robertson KM, Parsons KM, Viricel A, Vollmer NL, et al. Guidelines and quantitative standards to improve consistency in cetacean subspecies and species delimitation relying on molecular genetic data Marine Mammal Science. 33: 132-155. DOI: 10.1111/Mms.12411  0.755
2017 Rosel PE, Hancock-hanser BL, Archer FI, Robertson KM, Martien KK, Leslie MS, Berta A, Cipriano F, Viricel A, Viaud-Martinez KA, Taylor BL. Examining metrics and magnitudes of molecular genetic differentiation used to delimit cetacean subspecies based on mitochondrial DNA control region sequences Marine Mammal Science. 33: 76-100. DOI: 10.1111/Mms.12410  0.798
2017 Martien KK, Leslie MS, Taylor BL, Morin PA, Archer FI, Hancock-Hanser BL, Rosel PE, Vollmer NL, Viricel A, Cipriano F. Analytical approaches to subspecies delimitation with genetic data Marine Mammal Science. 33: 27-55. DOI: 10.1111/Mms.12409  0.794
2017 Rankin S, Archer F, Keating JL, Oswald JN, Oswald M, Curtis A, Barlow J. Acoustic classification of dolphins in the California Current using whistles, echolocation clicks, and burst pulses Marine Mammal Science. 33: 520-540. DOI: 10.1111/Mms.12381  0.352
2016 Parobek CM, Archer FI, DePrenger-Levin ME, Hoban SM, Liggins L, Strand AE. skeleSim: an extensible, general framework for population genetic simulation in R. Molecular Ecology Resources. PMID 27736016 DOI: 10.1111/1755-0998.12607  0.338
2016 Jombart T, Archer F, Schliep K, Kamvar Z, Harris R, Paradis E, Goudet J, Lapp H. apex: phylogenetics with multiple genes. Molecular Ecology Resources. PMID 27417145 DOI: 10.1111/1755-0998.12567  0.402
2016 Archer FI, Adams PE, Schneiders BB. strataG: An R package for manipulating, summarizing, and analyzing population genetic data. Molecular Ecology Resources. PMID 27327208 DOI: 10.1111/1755-0998.12559  0.368
2016 Chivers SJ, Perryman WL, Lynn MS, Gerrodette T, Archer FI, Danil K, Berman-Kowalewski M, Dines JP. Comparison of reproductive parameters for populations of eastern North Pacific common dolphins: Delphinus capensis and D. delphis Marine Mammal Science. 32: 57-85. DOI: 10.1111/Mms.12244  0.336
2015 Morin PA, Parsons KM, Archer FI, Ávila-Arcos MC, Barrett-Lennard LG, Dalla Rosa L, Duchêne S, Durban JW, Ellis GM, Ferguson SH, Ford JK, Ford MJ, Garilao C, Gilbert MT, Kaschner K, et al. Geographic and temporal dynamics of a global radiation and diversification in the killer whale. Molecular Ecology. 24: 3964-3979. PMID 26087773 DOI: 10.1111/Mec.13284  0.449
2015 Klueter A, Crandall JB, Archer FI, Teece MA, Coffroth MA. Taxonomic and environmental variation of metabolite profiles in marine dinoflagellates of the genus symbiodinium. Metabolites. 5: 74-99. PMID 25693143 DOI: 10.3390/Metabo5010074  0.365
2015 O'Corry-Crowe G, Lucey W, Archer FI, Mahoney B. The genetic ecology and population origins of the beluga whales, Delphinapterus leucas, of Yakutat Bay Marine Fisheries Review. 77: 47-58. DOI: 10.7755/MFR.77.1.5  0.34
2015 Lowther-Thieleking JL, Archer FI, Lang AR, Weller DW. Genetic differentiation among coastal and offshore common bottlenose dolphins, Tursiops truncatus, in the eastern North Pacific Ocean Marine Mammal Science. 31: 1-20. DOI: 10.1111/Mms.12135  0.718
2014 Martien KK, Chivers SJ, Baird RW, Archer FI, Gorgone AM, Hancock-Hanser BL, Mattila D, McSweeney DJ, Oleson EM, Palmer C, Pease VL, Robertson KM, Schorr GS, Schultz MB, Webster DL, et al. Nuclear and mitochondrial patterns of population structure in North Pacific false killer whales (Pseudorca crassidens). The Journal of Heredity. 105: 611-26. PMID 24831238 DOI: 10.1093/Jhered/Esu029  0.427
2013 Archer FI, Morin PA, Hancock-Hanser BL, Robertson KM, Leslie MS, Bérubé M, Panigada S, Taylor BL. Mitogenomic phylogenetics of fin whales (Balaenoptera physalus spp.): genetic evidence for revision of subspecies. Plos One. 8: e63396. PMID 23691042 DOI: 10.1371/Journal.Pone.0063396  0.734
2013 Hancock-Hanser BL, Frey A, Leslie MS, Dutton PH, Archer FI, Morin PA. Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics. Molecular Ecology Resources. 13: 254-68. PMID 23351075 DOI: 10.1111/1755-0998.12059  0.721
2012 Morin PA, Archer FI, Pease VL, Hancock-Hanser BL, Robertson KM, Huebinger RM, Martien KK, Bickham JW, George JC, Postma LD, Taylor BL. Empirical comparison of single nucleotide polymorphisms and microsatellites for population and demographic analyses of bowhead whales Endangered Species Research. 19: 129-147. DOI: 10.3354/Esr00459  0.428
2012 Rankin S, Archer F, Barlow J. Vocal activity of tropical dolphins is inhibited by the presence of killer whales, Orcinus orca Marine Mammal Science. 29: 679-690. DOI: 10.1111/J.1748-7692.2012.00613.X  0.332
2011 Duchêne S, Archer FI, Vilstrup J, Caballero S, Morin PA. Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation. Plos One. 6: e27138. PMID 22073275 DOI: 10.1371/Journal.Pone.0027138  0.413
2011 Mesnick SL, Taylor BL, Archer FI, Martien KK, Treviño SE, Hancock-Hanser BL, Moreno Medina SC, Pease VL, Robertson KM, Straley JM, Baird RW, Calambokidis J, Schorr GS, Wade P, Burkanov V, et al. Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA. Molecular Ecology Resources. 11: 278-98. PMID 21429181 DOI: 10.1111/J.1755-0998.2010.02973.X  0.457
2011 Perrin WF, Thieleking JL, Walker WA, Archer FI, Robertson KM. Common bottlenose dolphins (Tursiops truncatus) in California waters: Cranial differentiation of coastal and offshore ecotypes Marine Mammal Science. 27: 769-792. DOI: 10.1111/J.1748-7692.2010.00442.X  0.692
2010 Morin PA, Archer FI, Foote AD, Vilstrup J, Allen EE, Wade P, Durban J, Parsons K, Pitman R, Li L, Bouffard P, Abel Nielsen SC, Rasmussen M, Willerslev E, Gilbert MT, et al. Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Research. 20: 908-16. PMID 20413674 DOI: 10.1101/Gr.102954.109  0.509
2010 Morin PA, Martien KK, Archer FI, Cipriano F, Steel D, Jackson J, Taylor BL. Applied conservation genetics and the need for quality control and reporting of genetic data used in fisheries and wildlife management Journal of Heredity. 101: 1-10. PMID 19959596 DOI: 10.1093/Jhered/Esp107  0.494
2010 Archer FI, Redfern JV, Gerrodette T, Chivers SJ, Perrin WF. Estimation of relative exposure of dolphins to fishery activity Marine Ecology Progress Series. 410: 245-255. DOI: 10.3354/Meps08641  0.631
2009 Morin PA, Leduc RG, Archer FI, Martien KK, Huebinger R, Bickham JW, Taylor BL. Significant deviations from Hardy-Weinberg equilibrium caused by low levels of microsatellite genotyping errors. Molecular Ecology Resources. 9: 498-504. PMID 21564679 DOI: 10.1111/J.1755-0998.2008.02502.X  0.736
2009 Kellar NM, Trego ML, Marks CI, Chivers SJ, Danil K, Archer FI. Blubber testosterone: A potential marker of male reproductive status in short-beaked common dolphins Marine Mammal Science. 25: 507-522. DOI: 10.1111/J.1748-7692.2009.00291.X  0.683
2005 Escorza-Treviño S, Archer FI, Rosales M, Lang A, Dizon AE. Genetic differentiation and intraspecific structure of Eastern Tropical Pacific spotted dolphins, Stenella  attenuata, revealed by DNA analyses Conservation Genetics. 6: 587-600. DOI: 10.1007/s10592-005-9013-9  0.315
2004 Roeder AD, Archer FI, Poinar HN, Morin PA. A novel method for collection and preservation of faeces for genetic studies Molecular Ecology Notes. 4: 761-764. DOI: 10.1111/J.1471-8286.2004.00737.X  0.349
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